Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010601

Physical Location & Seq

Genomic Coordinates Reverse (-)

41514597 .. 41520225

Gene Structure 5629 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002905

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCCACCAGCAGCAGAAGCGGTGACCCATTTCCTTCATCCTCGGAATTATGGAAGTACGATGTTTTCTTGAGCTTTAGAGGGCAAGACACGCGCCGTGGCTTCACAGACCATCTCTACGCGGCACTAGGACGAGCTGGAGTCCGCGTCTATGTTGATGAGGAACTAAGAAGAGGGCAAGAAATAGGAGTTGATCTGATGAAAGCAATAGAAGAGTCGAAGATCTCTGTCGTCGTGTTTTCGCAGAATTATGCAAGTTCCTCATGGTGTCTAGAGGAGCTGGCGAAGATCATGGAGTGTAGATCAATGTTTGGCCAAGTGGTCTTGCCAGTATTCTATGATGTTGATCCTTCAGAGGTGAGACGTCAGACGGGTAGTTTTGCACAAGCATTTGCCAAACACGAAGAGCGCTTCGGGGAAGATTTGGGAAGGGTAAAGAGATGGAGAAGTGCTCTATCTGAAGCTGCAGATCTGTCAGGCTGGGATACTAAAGACAGGTATGAACTGAGTGTCATAAGGGACATTACAGAGCATATTATTAAACAGTTGTTGAACCCAGAAGTGGATGTTGAAGAGTTGCCAGAAGCGGAGGATGAATTAAAAGCGGTGGATGAGCCTTCTGTTTCAGAAAATATAATTTCTGCAGTGGATTGCCCTCGAATCAAAGAATGGTTCCATGAGGGGGATGGTGAAGAATGGAGCAAGAAGCATCGTAGCATATGGCTTGATGAAGAAGAGGCAAGTGAAAACGAAACTCTGATAAAGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

257

Amino Acids

29.35

Weight (kDa)

4.71

Isoelectric Point (pI)

65.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	19 - 184	8.7e-54	TIR domain
TIR_2	PF13676	22 - 122	1.4e-17	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010601)

Species	Orthologous Gene IDs
malus_domestica	MD01G1189400.v1.1 MD01G1189500.v1.1 MD01G1190900.v1.1 MD02G1115500.v1.1 MD07G1015200.v1.1
prunus_persica	Prupe.7G017000_v2.0.a1
pyrus_communis	pycom01g20170 pycom01g20180
rosa_chinensis	RchiOBHm_Chr1g0375961 RchiOBHm_Chr6g0246441 RchiOBHm_Chr6g0250821
rosa_laevigata	RLG00000002905 RLG00000026640 RLG00000026645 RLG00000028594
rosa_multiflora	Rmu_sc0001066.1_g000002
rosa_roxburghii	Rroxscaffold_4G00305800
rosa_rugosa	Rorug02G0306400 Rorug05G0497800 Rorug07G0269300
rosa_wichuraiana	Rw6G016530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	367
AccII	CGCG	3 cut(s)	94, 122, 147
AciI	CCGC	5 cut(s)	21, 122, 145, 587, 605
AclWI	GGATC	1 cut(s)	341
AcoI	YGGCCR	2 cut(s)	3, 313
AcuI	CTGAAG	2 cut(s)	336, 480
AcyI	GRCGYC	1 cut(s)	364
AfaI	GTAC	1 cut(s)	59
AfeI	AGCGCT	1 cut(s)	410
AfiI	CCNNNNNNNGG	2 cut(s)	562, 682
AgsI	TTSAA	2 cut(s)	553, 572
AluBI	AGCT	4 cut(s)	75, 137, 280, 464
AluI	AGCT	4 cut(s)	75, 137, 280, 464
Alw21I	GWGCWC	1 cut(s)	454
Alw26I	GTCTC	1 cut(s)	355
AlwI	GGATC	1 cut(s)	341
Aor51HI	AGCGCT	1 cut(s)	410
AoxI	GGCC	2 cut(s)	3, 313
ApeKI	GCWGC	2 cut(s)	12, 464
AspLEI	GCGC	2 cut(s)	96, 411
AsuHPI	GGTGA	3 cut(s)	35, 370, 701
BalI	TGGCCA	2 cut(s)	5, 315
Bbv12I	GWGCWC	1 cut(s)	454
BbvI	GCAGC	2 cut(s)	24, 451
BccI	CCATC	3 cut(s)	120, 435, 680
BceAI	ACGGC	1 cut(s)	81
BciVI	GTATCC	1 cut(s)	478
BcoDI	GTCTC	1 cut(s)	355
BfaI	CTAG	2 cut(s)	128, 272
BfmI	CTRYAG	2 cut(s)	465, 642
BfoI	RGCGCY	1 cut(s)	412
BfuI	GTATCC	1 cut(s)	478
BglII	AGATCT	2 cut(s)	222, 469
BisI	GCNGC	3 cut(s)	13, 123, 465
BlsI	GCNGC	3 cut(s)	14, 124, 466
BmiI	GGNNCC	1 cut(s)	674
BmsI	GCATC	1 cut(s)	718
BplI	GAGNNNNNCTC	2 cut(s)	436, 468
BpmI	CTGGAG	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	91
BsaBI	GATNNNNATC	1 cut(s)	345
BsaHI	GRCGYC	1 cut(s)	364
BsaJI	CCNNGG	2 cut(s)	42, 97
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bsc4I	CCNNNNNNNGG	2 cut(s)	562, 682
Bse1I	ACTGG	1 cut(s)	329
Bse8I	GATNNNNATC	1 cut(s)	345
BseDI	CCNNGG	2 cut(s)	42, 97
BseGI	GGATG	5 cut(s)	38, 571, 598, 616, 691
BseJI	GATNNNNATC	1 cut(s)	345
BseLI	CCNNNNNNNGG	2 cut(s)	562, 682
BseMII	CTCAG	1 cut(s)	497
BseNI	ACTGG	1 cut(s)	329
BseRI	GAGGAG	1 cut(s)	290
BseXI	GCAGC	2 cut(s)	24, 451
BseYI	CCCAGC	1 cut(s)	480
Bsh1236I	CGCG	3 cut(s)	94, 122, 147
BshFI	GGCC	2 cut(s)	5, 315
BsiHKAI	GWGCWC	1 cut(s)	454
BslFI	GGGAC	1 cut(s)	533
BslI	CCNNNNNNNGG	2 cut(s)	562, 682
BsmAI	GTCTC	1 cut(s)	355
BsmBI	CGTCTC	1 cut(s)	355
BsmFI	GGGAC	1 cut(s)	533
BsnI	GGCC	2 cut(s)	5, 315
Bsp1286I	GDGCHC	1 cut(s)	454
Bsp143I	GATC	6 cut(s)	193, 222, 288, 302, 346, 469
BspACI	CCGC	5 cut(s)	21, 122, 145, 587, 605
BspANI	GGCC	2 cut(s)	5, 315
BspCNI	CTCAG	1 cut(s)	498
BspFNI	CGCG	3 cut(s)	94, 122, 147
BspLI	GGNNCC	1 cut(s)	674
BspMAI	CTGCAG	2 cut(s)	469, 646
BspPI	GGATC	1 cut(s)	341
BspQI	GCTCTTC	1 cut(s)	399
BsrI	ACTGG	1 cut(s)	329
BssECI	CCNNGG	2 cut(s)	42, 97
BssMI	GATC	6 cut(s)	193, 222, 288, 302, 346, 469
BssNI	GRCGYC	1 cut(s)	364
Bst4CI	ACNGT	1 cut(s)	546
Bst6I	CTCTTC	5 cut(s)	166, 207, 399, 567, 729
BstACI	GRCGYC	1 cut(s)	364
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	2 cut(s)	167, 506
BstDSI	CCRYGG	1 cut(s)	97
BstEII	GGTNACC	1 cut(s)	23
BstF5I	GGATG	5 cut(s)	38, 571, 598, 616, 691
BstFNI	CGCG	3 cut(s)	94, 122, 147
BstH2I	RGCGCY	1 cut(s)	412
BstHHI	GCGC	2 cut(s)	96, 411
BstKTI	GATC	6 cut(s)	196, 225, 291, 305, 349, 472
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	6 cut(s)	193, 222, 288, 302, 346, 469
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 91
BstPI	GGTNACC	1 cut(s)	23
BstSFI	CTRYAG	2 cut(s)	465, 642
BstUI	CGCG	3 cut(s)	94, 122, 147
BstV1I	GCAGC	2 cut(s)	24, 451
BstX2I	RGATCY	2 cut(s)	222, 469
BstYI	RGATCY	2 cut(s)	222, 469
BsuI	GTATCC	1 cut(s)	478
BsuRI	GGCC	2 cut(s)	5, 315
BtgI	CCRYGG	1 cut(s)	97
BtsCI	GGATG	5 cut(s)	38, 571, 598, 616, 691
BtsI	GCAGTG	1 cut(s)	651
BtsIMutI	CAGTG	1 cut(s)	651
Cac8I	GCNNGC	1 cut(s)	282
CfoI	GCGC	2 cut(s)	96, 411
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	58
CviAII	CATG	3 cut(s)	264, 292, 677
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	2 cut(s)	167, 506
DpnI	GATC	6 cut(s)	195, 224, 290, 304, 348, 471
DpnII	GATC	6 cut(s)	193, 222, 288, 302, 346, 469
EaeI	YGGCCR	2 cut(s)	3, 313
Eam1104I	CTCTTC	5 cut(s)	166, 207, 399, 567, 729
EarI	CTCTTC	5 cut(s)	166, 207, 399, 567, 729
Eco47III	AGCGCT	1 cut(s)	410
Eco57I	CTGAAG	2 cut(s)	336, 480
Eco91I	GGTNACC	1 cut(s)	23
EcoO65I	GGTNACC	1 cut(s)	23
Esp3I	CGTCTC	1 cut(s)	355
FaeI	CATG	3 cut(s)	267, 295, 680
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	3 cut(s)	263, 291, 676
FauNDI	CATATG	1 cut(s)	719
Fnu4HI	GCNGC	3 cut(s)	13, 123, 465
FokI	GGATG	5 cut(s)	25, 578, 605, 623, 698
Fsp4HI	GCNGC	3 cut(s)	13, 123, 465
FspBI	CTAG	2 cut(s)	128, 272
GlaI	GCGC	2 cut(s)	95, 410
GluI	GCNGC	3 cut(s)	13, 123, 465
GsaI	CCCAGC	1 cut(s)	484
GsuI	CTGGAG	1 cut(s)	159
HaeII	RGCGCY	1 cut(s)	412
HaeIII	GGCC	2 cut(s)	5, 315
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	2 cut(s)	96, 411
Hin1I	GRCGYC	1 cut(s)	364
Hin1II	CATG	3 cut(s)	267, 295, 680
Hin6I	GCGC	2 cut(s)	94, 409
HinP1I	GCGC	2 cut(s)	94, 409
HinfI	GANTC	3 cut(s)	141, 215, 660
HphI	GGTGA	3 cut(s)	35, 370, 701
Hpy188I	TCNGA	7 cut(s)	46, 198, 355, 369, 460, 628, 759
Hpy188III	TCNNGA	2 cut(s)	70, 272
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	4 cut(s)	45, 360, 423, 627
HpyCH4III	ACNGT	1 cut(s)	546
HpyCH4IV	ACGT	1 cut(s)	364
HpyCH4V	TGCA	4 cut(s)	254, 383, 467, 644
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 91
HpyF3I	CTNAG	2 cut(s)	167, 506
HpySE526I	ACGT	1 cut(s)	364
Hsp92I	GRCGYC	1 cut(s)	364
Hsp92II	CATG	3 cut(s)	267, 295, 680
HspAI	GCGC	2 cut(s)	94, 409
Kzo9I	GATC	6 cut(s)	193, 222, 288, 302, 346, 469
LguI	GCTCTTC	1 cut(s)	399
LmnI	GCTCC	2 cut(s)	277, 699
LpnPI	CCDG	9 cut(s)	22, 123, 266, 342, 462, 466, 481, 570, 594
Lsp1109I	GCAGC	2 cut(s)	24, 451
LweI	GCATC	1 cut(s)	718
MaeI	CTAG	2 cut(s)	128, 272
MaeII	ACGT	1 cut(s)	364
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	6 cut(s)	195, 224, 290, 304, 348, 471
MboI	GATC	6 cut(s)	193, 222, 288, 302, 346, 469
MflI	RGATCY	2 cut(s)	222, 469
MhlI	GDGCHC	1 cut(s)	454
MlsI	TGGCCA	2 cut(s)	5, 315
MluCI	AATT	4 cut(s)	47, 247, 596, 636
MluNI	TGGCCA	2 cut(s)	5, 315
MlyI	GAGTC	2 cut(s)	150, 224
Mox20I	TGGCCA	2 cut(s)	5, 315
MscI	TGGCCA	2 cut(s)	5, 315
MseI	TTAA	2 cut(s)	540, 599
Msp20I	TGGCCA	2 cut(s)	5, 315
MvnI	CGCG	3 cut(s)	94, 122, 147
MwoI	GCNNNNNNNGC	2 cut(s)	18, 91
NdeI	CATATG	1 cut(s)	719
NdeII	GATC	6 cut(s)	193, 222, 288, 302, 346, 469
NlaIII	CATG	3 cut(s)	267, 295, 680
NlaIV	GGNNCC	1 cut(s)	674
NmuCI	GTSAC	1 cut(s)	23
PciSI	GCTCTTC	1 cut(s)	399
PfeI	GAWTC	1 cut(s)	660
PkrI	GCNGC	3 cut(s)	14, 124, 466
PleI	GAGTC	2 cut(s)	149, 223
PpsI	GAGTC	2 cut(s)	149, 223
PspEI	GGTNACC	1 cut(s)	23
PspFI	CCCAGC	1 cut(s)	480
PspN4I	GGNNCC	1 cut(s)	674
PstI	CTGCAG	2 cut(s)	469, 646
PsuI	RGATCY	2 cut(s)	222, 469
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
SapI	GCTCTTC	1 cut(s)	399
SaqAI	TTAA	2 cut(s)	540, 599
SatI	GCNGC	3 cut(s)	13, 123, 465
Sau3AI	GATC	6 cut(s)	193, 222, 288, 302, 346, 469
SchI	GAGTC	2 cut(s)	150, 224
SduI	GDGCHC	1 cut(s)	454
SetI	ASST	7 cut(s)	77, 139, 282, 360, 367, 466, 500
SfaNI	GCATC	1 cut(s)	718
SfcI	CTRYAG	2 cut(s)	465, 642
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
Sse9I	AATT	4 cut(s)	47, 247, 596, 636
SsiI	CCGC	5 cut(s)	21, 122, 145, 587, 605
SspMI	CTAG	2 cut(s)	128, 272
TaaI	ACNGT	1 cut(s)	546
TaiI	ACGT	1 cut(s)	367
TaqI	TCGA	2 cut(s)	218, 658
TasI	AATT	4 cut(s)	47, 247, 596, 636
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	1 cut(s)	660
Tru1I	TTAA	2 cut(s)	540, 599
Tru9I	TTAA	2 cut(s)	540, 599
TscAI	CASTG	1 cut(s)	651
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	2 cut(s)	12, 464
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	5 cut(s)	27, 215, 516, 609, 744
TspRI	CASTG	1 cut(s)	651
XbaI	TCTAGA	1 cut(s)	271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	683
XspI	CTAG	2 cut(s)	128, 272
ZraI	GACGTC	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.