pycom01g20170

RESISTANCE protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0010601
Physical Location & Seq
Forward (+)
18581409 .. 18583021
1613 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g20170.2

Sequence Viewer

Length: 1095 bp
ATGGCTGTTTCTTCTTTTTCTTCGGTATCTGACGACCTTCGTTGGAAATATGATGTCTTCGTCAGTTTCAGAGGCGAAGACACCGGCAGGGGTTTTGTCAGCCATCTGCTCAGAGCTTTCAAGCAGAAATCAATCAGTACATCCGTGGATGCTGAAGATATTTGCAGAGGCGACTGCCTTTCGGAGGAGCTCCGAAAACGCGTCCAACGGTCGAGGCTTTCGATTGTAGTTTTTTCTAAAAACTACGCTTCTTCCAGGTGGTGCCTCAGAGAACTGGTTCAAATGGTGGAACAAGTGAAGATGACTGGCCAGGTGTTGGTGCCCGTTTTCCATGGAGTAGATCCGTCTGATGTTCGTAAAGCCAGGGGAGCTTTTTGTGCAGCTTTTGCAAGATATGACTGCGAAATGGAACAGGAGGAAGTGCGCACTTGGAGGGGAGCTCTAGCTGCTGCAACCGATCGTTTTGGCTGGAATATACAAGATTATAGGGATGATGCCGAGCTGATTGAGGAAATCGTACAATTTGTTTTTAACAAATTGATCGGCTTGTCATCGTTTGAGGGTGGTTGGAAATATGATGTTTTTCTCAATTTTAGAGGTGAAGACACTCGCAAGAGTTTTTCCAGCCATCTCTACAAAGCTCTGTATCAAAAACGAATCAACACCTTCATGGATGATGAAGAGCTTAGAAAAGGCAACAGCCTTTCGGAGCTCCTGAAATGTATTAAACAGTCGCGAGTTTCGATTGTTGTTTTTTCTGAAGACTACGCTTCTTCCACATGGTGCTTAAAAGAACTCGTGCAGATCCTCAAATGCATGGATGAACAAAATCAGATAGTGATCCCCGTTTTCTACGAAGTTGATCCATCTCAAGTTTGTAAGCCGGAAGCTTTTACTAAACACGATCGCGATTCTAAGGTGGAGAAGGAAGAGGTGCAGAGCTGGATGTCGGCCCTAACAAGAGCCACCAATTTAACTCTACCTCGCTGGGATTCACGAAATTATGAGGATGATGCCAAGCTTATTGAGGACATTGTACAACATATTTCGAGAGAGCTTTCCCGTTTTACCATACCGCAGATGGGTCATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

365

Amino Acids

42.21

Weight (kDa)

5.84

Isoelectric Point (pI)

52.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 425
AccB1I GGYRCC 2 cut(s) 261, 319
AccB7I CCANNNNNTGG 1 cut(s) 316
AccII CGCG 3 cut(s) 201, 736, 909
AciI CCGC 1 cut(s) 1076
AclWI GGATC 4 cut(s) 335, 799, 835, 857
AcoI YGGCCR 1 cut(s) 307
AcuI CTGAAG 2 cut(s) 174, 780
AdeI CACNNNGTG 1 cut(s) 783
AfaI GTAC 3 cut(s) 139, 519, 1038
AfiI CCNNNNNNNGG 3 cut(s) 184, 316, 1082
AflIII ACRYGT 1 cut(s) 199
AgsI TTSAA 2 cut(s) 121, 281
AjnI CCWGG 3 cut(s) 254, 309, 362
Alw21I GWGCWC 3 cut(s) 192, 442, 714
AlwI GGATC 4 cut(s) 335, 799, 835, 857
AoxI GGCC 2 cut(s) 307, 951
ApeKI GCWGC 3 cut(s) 380, 446, 449
Asp700I GAANNNNTTC 1 cut(s) 276
AspLEI GCGC 1 cut(s) 426
AspS9I GGNCC 1 cut(s) 952
AsuHPI GGTGA 1 cut(s) 611
BaeGI GKGCMC 1 cut(s) 324
BalI TGGCCA 1 cut(s) 309
BanI GGYRCC 2 cut(s) 261, 319
BanII GRGCYC 3 cut(s) 192, 442, 714
BauI CACGAG 1 cut(s) 797
BbsI GAAGAC 4 cut(s) 49, 84, 609, 768
Bbv12I GWGCWC 3 cut(s) 192, 442, 714
BbvI GCAGC 3 cut(s) 392, 433, 436
BccI CCATC 4 cut(s) 111, 636, 874, 1075
BciT130I CCWGG 3 cut(s) 256, 311, 364
BfaI CTAG 1 cut(s) 443
BisI GCNGC 3 cut(s) 381, 447, 450
BlsI GCNGC 3 cut(s) 382, 448, 451
Bme1390I CCNGG 3 cut(s) 256, 311, 364
BmgT120I GGNCC 1 cut(s) 952
BmiI GGNNCC 2 cut(s) 263, 321
BmrFI CCNGG 3 cut(s) 256, 311, 364
BmsI GCATC 3 cut(s) 139, 484, 1003
BpiI GAAGAC 4 cut(s) 49, 84, 609, 768
BplI GAGNNNNNCTC 2 cut(s) 424, 456
BpuEI CTTGAG 1 cut(s) 855
BsaBI GATNNNNATC 1 cut(s) 839
BsaJI CCNNGG 3 cut(s) 144, 331, 363
Bsc4I CCNNNNNNNGG 3 cut(s) 184, 316, 1082
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 279, 310
Bse8I GATNNNNATC 1 cut(s) 839
BseBI CCWGG 3 cut(s) 256, 311, 364
BseDI CCNNGG 3 cut(s) 144, 331, 363
BseGI GGATG 7 cut(s) 140, 154, 496, 679, 826, 951, 1015
BseJI GATNNNNATC 1 cut(s) 839
BseLI CCNNNNNNNGG 3 cut(s) 184, 316, 1082
BseMII CTCAG 2 cut(s) 124, 280
BseNI ACTGG 2 cut(s) 279, 310
BseRI GAGGAG 1 cut(s) 200
BseSI GKGCMC 1 cut(s) 324
BseXI GCAGC 3 cut(s) 392, 433, 436
BseYI CCCAGC 1 cut(s) 987
BsgI GTGCAG 3 cut(s) 399, 821, 956
Bsh1236I CGCG 3 cut(s) 201, 736, 909
Bsh1285I CGRYCG 3 cut(s) 212, 460, 907
BshFI GGCC 2 cut(s) 309, 953
BshNI GGYRCC 2 cut(s) 261, 319
BsiEI CGRYCG 3 cut(s) 212, 460, 907
BsiHKAI GWGCWC 3 cut(s) 192, 442, 714
BsiSI CCGG 2 cut(s) 84, 884
BslI CCNNNNNNNGG 3 cut(s) 184, 316, 1082
BsnI GGCC 2 cut(s) 309, 953
Bsp1286I GDGCHC 4 cut(s) 192, 324, 442, 714
Bsp1407I TGTACA 1 cut(s) 1036
Bsp143I GATC 7 cut(s) 340, 457, 540, 804, 840, 862, 904
Bsp19I CCATGG 1 cut(s) 331
Bsp68I TCGCGA 2 cut(s) 736, 909
BspACI CCGC 1 cut(s) 1076
BspANI GGCC 2 cut(s) 309, 953
BspCNI CTCAG 2 cut(s) 123, 279
BspFNI CGCG 3 cut(s) 201, 736, 909
BspLI GGNNCC 2 cut(s) 263, 321
BspPI GGATC 4 cut(s) 335, 799, 835, 857
BspQI GCTCTTC 1 cut(s) 675
BspT107I GGYRCC 2 cut(s) 261, 319
BsrFI RCCGGY 1 cut(s) 83
BsrGI TGTACA 1 cut(s) 1036
BsrI ACTGG 2 cut(s) 279, 310
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 3 cut(s) 144, 331, 363
BssMI GATC 7 cut(s) 340, 457, 540, 804, 840, 862, 904
BssSI CACGAG 1 cut(s) 797
BssT1I CCWWGG 1 cut(s) 331
Bst2BI CACGAG 1 cut(s) 797
Bst2UI CCWGG 3 cut(s) 256, 311, 364
Bst4CI ACNGT 2 cut(s) 210, 732
Bst6I CTCTTC 2 cut(s) 675, 924
BstAPI GCANNNNNTGC 1 cut(s) 386
BstAUI TGTACA 1 cut(s) 1036
BstDEI CTNAG 4 cut(s) 110, 266, 686, 915
BstDSI CCRYGG 2 cut(s) 144, 331
BstENI CCTNNNNNAGG 1 cut(s) 182
BstF5I GGATG 7 cut(s) 140, 154, 496, 679, 826, 951, 1015
BstFNI CGCG 3 cut(s) 201, 736, 909
BstHHI GCGC 1 cut(s) 426
BstKTI GATC 7 cut(s) 343, 460, 543, 807, 843, 865, 907
BstMBI GATC 7 cut(s) 340, 457, 540, 804, 840, 862, 904
BstMCI CGRYCG 3 cut(s) 212, 460, 907
BstMWI GCNNNNNNNGC 4 cut(s) 368, 377, 386, 446
BstNI CCWGG 3 cut(s) 256, 311, 364
BstSCI CCNGG 3 cut(s) 254, 309, 362
BstSLI GKGCMC 1 cut(s) 324
BstUI CGCG 3 cut(s) 201, 736, 909
BstV1I GCAGC 3 cut(s) 392, 433, 436
BstV2I GAAGAC 4 cut(s) 49, 84, 609, 768
BstX2I RGATCY 2 cut(s) 340, 804
BstYI RGATCY 2 cut(s) 340, 804
BsuRI GGCC 2 cut(s) 309, 953
BtgI CCRYGG 2 cut(s) 144, 331
BtsCI GGATG 7 cut(s) 140, 154, 496, 679, 826, 951, 1015
BtuMI TCGCGA 2 cut(s) 736, 909
CfoI GCGC 1 cut(s) 426
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 952
CseI GACGC 1 cut(s) 190
Csp6I GTAC 3 cut(s) 138, 518, 1037
CviAII CATG 5 cut(s) 332, 670, 780, 817, 1088
CviQI GTAC 3 cut(s) 138, 518, 1037
DdeI CTNAG 4 cut(s) 110, 266, 686, 915
DpnI GATC 7 cut(s) 342, 459, 542, 806, 842, 864, 906
DpnII GATC 7 cut(s) 340, 457, 540, 804, 840, 862, 904
DraIII CACNNNGTG 1 cut(s) 783
EaeI YGGCCR 1 cut(s) 307
Eam1104I CTCTTC 2 cut(s) 675, 924
EarI CTCTTC 2 cut(s) 675, 924
Ecl136II GAGCTC 3 cut(s) 190, 440, 712
Eco130I CCWWGG 1 cut(s) 331
Eco24I GRGCYC 3 cut(s) 192, 442, 714
Eco53kI GAGCTC 3 cut(s) 190, 440, 712
Eco57I CTGAAG 2 cut(s) 174, 780
EcoICRI GAGCTC 3 cut(s) 190, 440, 712
EcoNI CCTNNNNNAGG 1 cut(s) 182
EcoRII CCWGG 3 cut(s) 254, 309, 362
EcoT14I CCWWGG 1 cut(s) 331
EcoT22I ATGCAT 1 cut(s) 818
EcoT38I GRGCYC 3 cut(s) 192, 442, 714
ErhI CCWWGG 1 cut(s) 331
FaeI CATG 5 cut(s) 335, 673, 783, 820, 1091
FatI CATG 5 cut(s) 331, 669, 779, 816, 1087
Fnu4HI GCNGC 3 cut(s) 381, 447, 450
FokI GGATG 7 cut(s) 127, 161, 503, 686, 833, 958, 1022
FriOI GRGCYC 3 cut(s) 192, 442, 714
Fsp4HI GCNGC 3 cut(s) 381, 447, 450
FspAI RTGCGCAY 1 cut(s) 425
FspBI CTAG 1 cut(s) 443
FspI TGCGCA 1 cut(s) 425
GlaI GCGC 1 cut(s) 425
GluI GCNGC 3 cut(s) 381, 447, 450
GsaI CCCAGC 1 cut(s) 991
HaeIII GGCC 2 cut(s) 309, 953
HapII CCGG 2 cut(s) 84, 884
HgaI GACGC 1 cut(s) 190
HhaI GCGC 1 cut(s) 426
Hin1II CATG 5 cut(s) 335, 673, 783, 820, 1091
Hin6I GCGC 1 cut(s) 424
HinP1I GCGC 1 cut(s) 424
HindIII AAGCTT 2 cut(s) 888, 1019
HinfI GANTC 3 cut(s) 657, 911, 992
HpaII CCGG 2 cut(s) 84, 884
HphI GGTGA 1 cut(s) 611
Hpy188III TCNNGA 5 cut(s) 715, 735, 908, 996, 1050
HpyAV CCTTC 3 cut(s) 47, 676, 919
HpyCH4III ACNGT 2 cut(s) 210, 732
HpyCH4V TGCA 7 cut(s) 165, 380, 389, 452, 802, 816, 937
HpyF10VI GCNNNNNNNGC 4 cut(s) 368, 377, 386, 446
HpyF3I CTNAG 4 cut(s) 110, 266, 686, 915
Hsp92II CATG 5 cut(s) 335, 673, 783, 820, 1091
HspAI GCGC 1 cut(s) 424
Kzo9I GATC 7 cut(s) 340, 457, 540, 804, 840, 862, 904
LguI GCTCTTC 1 cut(s) 675
LmnI GCTCC 6 cut(s) 187, 195, 368, 437, 709, 717
Lsp1109I GCAGC 3 cut(s) 392, 433, 436
LweI GCATC 3 cut(s) 139, 484, 1003
MaeI CTAG 1 cut(s) 443
MalI GATC 7 cut(s) 342, 459, 542, 806, 842, 864, 906
MboI GATC 7 cut(s) 340, 457, 540, 804, 840, 862, 904
MflI RGATCY 2 cut(s) 340, 804
MhlI GDGCHC 4 cut(s) 192, 324, 442, 714
MlsI TGGCCA 1 cut(s) 309
MluCI AATT 5 cut(s) 521, 536, 589, 970, 1000
MluI ACGCGT 1 cut(s) 199
MluNI TGGCCA 1 cut(s) 309
MmeI TCCRAC 3 cut(s) 23, 229, 548
Mox20I TGGCCA 1 cut(s) 309
Mph1103I ATGCAT 1 cut(s) 818
MroXI GAANNNNTTC 1 cut(s) 276
MscI TGGCCA 1 cut(s) 309
MseI TTAA 4 cut(s) 531, 726, 788, 974
MslI CAYNNNNRTG 1 cut(s) 668
Msp20I TGGCCA 1 cut(s) 309
MspI CCGG 2 cut(s) 84, 884
MspR9I CCNGG 3 cut(s) 256, 311, 364
MvaI CCWGG 3 cut(s) 256, 311, 364
MvnI CGCG 3 cut(s) 201, 736, 909
MwoI GCNNNNNNNGC 4 cut(s) 368, 377, 386, 446
NcoI CCATGG 1 cut(s) 331
NdeII GATC 7 cut(s) 340, 457, 540, 804, 840, 862, 904
NlaIII CATG 5 cut(s) 335, 673, 783, 820, 1091
NlaIV GGNNCC 2 cut(s) 263, 321
NmeAIII GCCGAG 1 cut(s) 523
NruI TCGCGA 2 cut(s) 736, 909
NsbI TGCGCA 1 cut(s) 425
NsiI ATGCAT 1 cut(s) 818
PciSI GCTCTTC 1 cut(s) 675
PcsI WCGNNNNNNNCGW 2 cut(s) 218, 740
PdmI GAANNNNTTC 1 cut(s) 276
PfeI GAWTC 3 cut(s) 657, 911, 992
PflMI CCANNNNNTGG 1 cut(s) 316
PkrI GCNGC 3 cut(s) 382, 448, 451
Ple19I CGATCG 2 cut(s) 460, 907
Psp124BI GAGCTC 3 cut(s) 192, 442, 714
Psp6I CCWGG 3 cut(s) 254, 309, 362
PspFI CCCAGC 1 cut(s) 987
PspGI CCWGG 3 cut(s) 254, 309, 362
PspN4I GGNNCC 2 cut(s) 263, 321
PspPI GGNCC 1 cut(s) 952
PsuI RGATCY 2 cut(s) 340, 804
PvuI CGATCG 2 cut(s) 460, 907
RruI TCGCGA 2 cut(s) 736, 909
RsaI GTAC 3 cut(s) 139, 519, 1038
RsaNI GTAC 3 cut(s) 138, 518, 1037
RseI CAYNNNNRTG 1 cut(s) 668
SacI GAGCTC 3 cut(s) 192, 442, 714
SapI GCTCTTC 1 cut(s) 675
SaqAI TTAA 4 cut(s) 531, 726, 788, 974
SatI GCNGC 3 cut(s) 381, 447, 450
Sau3AI GATC 7 cut(s) 340, 457, 540, 804, 840, 862, 904
Sau96I GGNCC 1 cut(s) 952
ScrFI CCNGG 3 cut(s) 256, 311, 364
SduI GDGCHC 4 cut(s) 192, 324, 442, 714
SfaNI GCATC 3 cut(s) 139, 484, 1003
SmiMI CAYNNNNRTG 1 cut(s) 668
SmlI CTYRAG 1 cut(s) 870
SmoI CTYRAG 1 cut(s) 870
Sse9I AATT 5 cut(s) 521, 536, 589, 970, 1000
SsiI CCGC 1 cut(s) 1076
SspMI CTAG 1 cut(s) 443
SstI GAGCTC 3 cut(s) 192, 442, 714
StyD4I CCNGG 3 cut(s) 254, 309, 362
StyI CCWWGG 1 cut(s) 331
TaaI ACNGT 2 cut(s) 210, 732
TaqI TCGA 4 cut(s) 212, 221, 743, 1049
TasI AATT 5 cut(s) 521, 536, 589, 970, 1000
TatI WGTACW 2 cut(s) 137, 1036
TfiI GAWTC 3 cut(s) 657, 911, 992
Tru1I TTAA 4 cut(s) 531, 726, 788, 974
Tru9I TTAA 4 cut(s) 531, 726, 788, 974
TseI GCWGC 3 cut(s) 380, 446, 449
TspDTI ATGAA 3 cut(s) 658, 693, 837
TspGWI ACGGA 2 cut(s) 133, 333
Van91I CCANNNNNTGG 1 cut(s) 316
XagI CCTNNNNNAGG 1 cut(s) 182
XcmI CCANNNNNNNNNTGG 1 cut(s) 1078
XmnI GAANNNNTTC 1 cut(s) 276
XspI CTAG 1 cut(s) 443
Zsp2I ATGCAT 1 cut(s) 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.