Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0010601

Physical Location & Seq

Genomic Coordinates Reverse (-)

4517711 .. 4520924

Gene Structure 3214 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026640

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGATGGCTTCTTCTTCATCATCCAGCGGTCACCGGAAGTATGATGTCTTCCTAAGTTTTAGAGGAGAAGACACCCGAAAAATCTTCGTCGGCCACCTTTACAGAGCTCTGCAACAGAAAGCAATCAATACTTTCATTGATTCTGAAGAGCTGAGCAAAGGCAACAAGATTTCGGAGCTACTCACAGCTATTGACGACTCGAGACTTTCGATTGTCGTTTTATCTCAGAACTATGCCACCTCCACTTGGTGCTTAAAAGAGCTCGTCAAAATCCTGGATTGCATGGATACGAAGAAGCAGATAGTGGTGCCCATCTTCTACCAAGTAGATCCCTCTCATCTACGGAAAATCAATGGAAAATTTGCACAAGCTTTTGCCAAACATGGAGAAAATCCTGACCTCGACAAGGAAGAGTTGAAGAGCTGGAGATCCGCTCTAACTGCAATTGCGGATCTATCTGGCTGGGATTCGAGCAAATATGATAGTGATCCAAGTGGAGATGTATATGTTTGGTTTATCTGGAACAGCACAGCGAGAGGAGGAAAGTATGCCTCAGTGATTTCACTCCCTCTTCAAAAGAATGCTCCTTGTACTACTGATGTTGAAGCTGTAGATGCCAGGGAAAGGAGGAAACGAAAAGGGAGTCTGGCAAAGTATCAATCGTACAATGTTATCAAAGGTGATCACATCTTACAACCAGTGATAGCATTCGAACCTCATCTTTCCATCACAGAAAGGGAGAATCATATCAAGATGAGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009626 GO:0009628 GO:0009639 GO:0009870 GO:0009987 GO:0010114 GO:0012501 GO:0012505 GO:0016020 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

255

Amino Acids

28.71

Weight (kDa)

8.8

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	13 - 162	3.5e-50	TIR domain
TIR_2	PF13676	16 - 117	2.2e-16	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010601)

Species	Orthologous Gene IDs
malus_domestica	MD01G1189400.v1.1 MD01G1189500.v1.1 MD01G1190900.v1.1 MD02G1115500.v1.1 MD07G1015200.v1.1
prunus_persica	Prupe.7G017000_v2.0.a1
pyrus_communis	pycom01g20170 pycom01g20180
rosa_chinensis	RchiOBHm_Chr1g0375961 RchiOBHm_Chr6g0246441 RchiOBHm_Chr6g0250821
rosa_laevigata	RLG00000002905 RLG00000026640 RLG00000026645 RLG00000028594
rosa_multiflora	Rmu_sc0001066.1_g000002
rosa_roxburghii	Rroxscaffold_4G00305800
rosa_rugosa	Rorug02G0306400 Rorug05G0497800 Rorug07G0269300
rosa_wichuraiana	Rw6G016530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	307
AccBSI	CCGCTC	1 cut(s)	434
AciI	CCGC	3 cut(s)	27, 432, 449
AclWI	GGATC	4 cut(s)	323, 423, 459, 482
AcoI	YGGCCR	1 cut(s)	91
AcsI	RAATTY	1 cut(s)	359
AcuI	CTGAAG	1 cut(s)	165
AdeI	CACNNNGTG	1 cut(s)	249
AfaI	GTAC	2 cut(s)	592, 665
AfiI	CCNNNNNNNGG	3 cut(s)	246, 406, 624
AgsI	TTSAA	3 cut(s)	418, 575, 605
AjnI	CCWGG	2 cut(s)	273, 617
AluBI	AGCT	8 cut(s)	107, 151, 178, 188, 262, 371, 423, 608
AluI	AGCT	8 cut(s)	107, 151, 178, 188, 262, 371, 423, 608
Alw21I	GWGCWC	2 cut(s)	109, 264
Alw26I	GTCTC	1 cut(s)	196
AlwI	GGATC	4 cut(s)	323, 423, 459, 482
Ama87I	CYCGRG	1 cut(s)	199
AoxI	GGCC	1 cut(s)	91
ApoI	RAATTY	1 cut(s)	359
ArsI	GACNNNNNNTTYG	2 cut(s)	628, 660
AsuHPI	GGTGA	2 cut(s)	23, 692
AsuII	TTCGAA	1 cut(s)	711
AvaI	CYCGRG	1 cut(s)	199
BaeGI	GKGCMC	1 cut(s)	312
BanI	GGYRCC	1 cut(s)	307
BanII	GRGCYC	2 cut(s)	109, 264
BarI	GAAGNNNNNNTAC	2 cut(s)	32, 64
BbsI	GAAGAC	2 cut(s)	40, 75
Bbv12I	GWGCWC	2 cut(s)	109, 264
BccI	CCATC	2 cut(s)	320, 734
BciT130I	CCWGG	2 cut(s)	275, 619
BciVI	GTATCC	1 cut(s)	280
BclI	TGATCA	1 cut(s)	682
BcoDI	GTCTC	1 cut(s)	196
BfmI	CTRYAG	1 cut(s)	609
BfuI	GTATCC	1 cut(s)	280
BlpI	GCTNAGC	1 cut(s)	152
Bme1390I	CCNGG	2 cut(s)	275, 619
BmeT110I	CYCGRG	1 cut(s)	199
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	2 cut(s)	275, 619
BmsI	GCATC	1 cut(s)	604
BpiI	GAAGAC	2 cut(s)	40, 75
BplI	GAGNNNNNCTC	2 cut(s)	418, 450
BpmI	CTGGAG	1 cut(s)	445
Bpu1102I	GCTNAGC	1 cut(s)	152
Bpu14I	TTCGAA	1 cut(s)	711
BsaBI	GATNNNNATC	1 cut(s)	486
BsaJI	CCNNGG	1 cut(s)	618
BsaWI	WCCGGW	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	3 cut(s)	246, 406, 624
Bse1I	ACTGG	1 cut(s)	698
Bse8I	GATNNNNATC	1 cut(s)	486
BseBI	CCWGG	2 cut(s)	275, 619
BseDI	CCNNGG	1 cut(s)	618
BseGI	GGATG	1 cut(s)	20
BseJI	GATNNNNATC	1 cut(s)	486
BseLI	CCNNNNNNNGG	3 cut(s)	246, 406, 624
BseMII	CTCAG	3 cut(s)	143, 239, 567
BseNI	ACTGG	1 cut(s)	698
BseRI	GAGGAG	2 cut(s)	78, 552
BseSI	GKGCMC	1 cut(s)	312
BseYI	CCCAGC	1 cut(s)	462
BshFI	GGCC	1 cut(s)	93
BshNI	GGYRCC	1 cut(s)	307
BsiHKAI	GWGCWC	2 cut(s)	109, 264
BsiHKCI	CYCGRG	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	34
BslI	CCNNNNNNNGG	3 cut(s)	246, 406, 624
BsmAI	GTCTC	1 cut(s)	196
BsmI	GAATGC	2 cut(s)	586, 707
BsnI	GGCC	1 cut(s)	93
BsoBI	CYCGRG	1 cut(s)	199
Bsp119I	TTCGAA	1 cut(s)	711
Bsp1286I	GDGCHC	3 cut(s)	109, 264, 312
Bsp143I	GATC	5 cut(s)	328, 428, 451, 487, 682
Bsp1720I	GCTNAGC	1 cut(s)	152
BspACI	CCGC	3 cut(s)	27, 432, 449
BspANI	GGCC	1 cut(s)	93
BspCNI	CTCAG	3 cut(s)	144, 238, 566
BspLI	GGNNCC	1 cut(s)	309
BspPI	GGATC	4 cut(s)	323, 423, 459, 482
BspQI	GCTCTTC	2 cut(s)	141, 413
BspT104I	TTCGAA	1 cut(s)	711
BspT107I	GGYRCC	1 cut(s)	307
BsrBI	CCGCTC	1 cut(s)	434
BsrI	ACTGG	1 cut(s)	698
BssECI	CCNNGG	1 cut(s)	618
BssMI	GATC	5 cut(s)	328, 428, 451, 487, 682
Bst2UI	CCWGG	2 cut(s)	275, 619
Bst6I	CTCTTC	4 cut(s)	141, 405, 413, 576
BstBI	TTCGAA	1 cut(s)	711
BstDEI	CTNAG	4 cut(s)	53, 152, 225, 553
BstEII	GGTNACC	1 cut(s)	29
BstENI	CCTNNNNNAGG	1 cut(s)	404
BstF5I	GGATG	1 cut(s)	20
BstKTI	GATC	5 cut(s)	331, 431, 454, 490, 685
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	5 cut(s)	328, 428, 451, 487, 682
BstMWI	GCNNNNNNNGC	2 cut(s)	440, 614
BstNI	CCWGG	2 cut(s)	275, 619
BstPI	GGTNACC	1 cut(s)	29
BstSCI	CCNGG	2 cut(s)	273, 617
BstSFI	CTRYAG	1 cut(s)	609
BstSLI	GKGCMC	1 cut(s)	312
BstV2I	GAAGAC	2 cut(s)	40, 75
BstX2I	RGATCY	3 cut(s)	328, 428, 451
BstYI	RGATCY	3 cut(s)	328, 428, 451
BsuI	GTATCC	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	20
BtsIMutI	CAGTG	2 cut(s)	561, 705
Csp6I	GTAC	2 cut(s)	591, 664
CviAII	CATG	2 cut(s)	283, 383
CviQI	GTAC	2 cut(s)	591, 664
DdeI	CTNAG	4 cut(s)	53, 152, 225, 553
DpnI	GATC	5 cut(s)	330, 430, 453, 489, 684
DpnII	GATC	5 cut(s)	328, 428, 451, 487, 682
DraIII	CACNNNGTG	1 cut(s)	249
EaeI	YGGCCR	1 cut(s)	91
Eam1104I	CTCTTC	4 cut(s)	141, 405, 413, 576
EarI	CTCTTC	4 cut(s)	141, 405, 413, 576
Ecl136II	GAGCTC	2 cut(s)	107, 262
Eco24I	GRGCYC	2 cut(s)	109, 264
Eco53kI	GAGCTC	2 cut(s)	107, 262
Eco57I	CTGAAG	1 cut(s)	165
Eco88I	CYCGRG	1 cut(s)	199
Eco91I	GGTNACC	1 cut(s)	29
EcoICRI	GAGCTC	2 cut(s)	107, 262
EcoNI	CCTNNNNNAGG	1 cut(s)	404
EcoO65I	GGTNACC	1 cut(s)	29
EcoRII	CCWGG	2 cut(s)	273, 617
EcoT38I	GRGCYC	2 cut(s)	109, 264
FaeI	CATG	2 cut(s)	286, 386
FaiI	YATR	9 cut(s)	42, 234, 284, 384, 480, 505, 507, 549, 747
FatI	CATG	2 cut(s)	282, 382
FbaI	TGATCA	1 cut(s)	682
FokI	GGATG	1 cut(s)	7
FriOI	GRGCYC	2 cut(s)	109, 264
GsaI	CCCAGC	1 cut(s)	466
GsuI	CTGGAG	1 cut(s)	445
HaeIII	GGCC	1 cut(s)	93
HapII	CCGG	1 cut(s)	34
Hin1II	CATG	2 cut(s)	286, 386
HindIII	AAGCTT	1 cut(s)	369
HinfI	GANTC	5 cut(s)	140, 197, 467, 643, 742
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	2 cut(s)	23, 692
Hpy188I	TCNGA	3 cut(s)	145, 175, 228
Hpy188III	TCNNGA	4 cut(s)	201, 395, 520, 751
Hpy99I	CGWCG	1 cut(s)	92
HpyCH4V	TGCA	4 cut(s)	112, 282, 365, 443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	440, 614
HpyF3I	CTNAG	4 cut(s)	53, 152, 225, 553
Hsp92II	CATG	2 cut(s)	286, 386
Ksp22I	TGATCA	1 cut(s)	682
Kzo9I	GATC	5 cut(s)	328, 428, 451, 487, 682
LguI	GCTCTTC	2 cut(s)	141, 413
LmnI	GCTCC	2 cut(s)	175, 589
LweI	GCATC	1 cut(s)	604
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	5 cut(s)	330, 430, 453, 489, 684
MbiI	CCGCTC	1 cut(s)	434
MboI	GATC	5 cut(s)	328, 428, 451, 487, 682
MfeI	CAATTG	1 cut(s)	444
MflI	RGATCY	3 cut(s)	328, 428, 451
MhlI	GDGCHC	3 cut(s)	109, 264, 312
MluCI	AATT	3 cut(s)	359, 444, 760
MlyI	GAGTC	2 cut(s)	191, 652
MseI	TTAA	1 cut(s)	254
MspA1I	CMGCKG	1 cut(s)	27
MspI	CCGG	1 cut(s)	34
MspR9I	CCNGG	2 cut(s)	275, 619
MunI	CAATTG	1 cut(s)	444
Mva1269I	GAATGC	2 cut(s)	586, 707
MvaI	CCWGG	2 cut(s)	275, 619
MwoI	GCNNNNNNNGC	2 cut(s)	440, 614
NdeII	GATC	5 cut(s)	328, 428, 451, 487, 682
NlaIII	CATG	2 cut(s)	286, 386
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	1 cut(s)	29
NspV	TTCGAA	1 cut(s)	711
PaeR7I	CTCGAG	1 cut(s)	199
PciSI	GCTCTTC	2 cut(s)	141, 413
PcsI	WCGNNNNNNNCGW	1 cut(s)	206
PctI	GAATGC	2 cut(s)	586, 707
PfeI	GAWTC	3 cut(s)	140, 467, 742
PfoI	TCCNGGA	1 cut(s)	273
PleI	GAGTC	2 cut(s)	191, 651
PpsI	GAGTC	2 cut(s)	191, 651
Psp124BI	GAGCTC	2 cut(s)	109, 264
Psp6I	CCWGG	2 cut(s)	273, 617
PspEI	GGTNACC	1 cut(s)	29
PspFI	CCCAGC	1 cut(s)	462
PspGI	CCWGG	2 cut(s)	273, 617
PspN4I	GGNNCC	1 cut(s)	309
PsuI	RGATCY	3 cut(s)	328, 428, 451
RsaI	GTAC	2 cut(s)	592, 665
RsaNI	GTAC	2 cut(s)	591, 664
SacI	GAGCTC	2 cut(s)	109, 264
SapI	GCTCTTC	2 cut(s)	141, 413
SaqAI	TTAA	1 cut(s)	254
Sau3AI	GATC	5 cut(s)	328, 428, 451, 487, 682
SchI	GAGTC	2 cut(s)	191, 652
ScrFI	CCNGG	2 cut(s)	275, 619
SduI	GDGCHC	3 cut(s)	109, 264, 312
SfaNI	GCATC	1 cut(s)	604
SfcI	CTRYAG	1 cut(s)	609
Sfr274I	CTCGAG	1 cut(s)	199
SfuI	TTCGAA	1 cut(s)	711
SlaI	CTCGAG	1 cut(s)	199
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
Sse9I	AATT	3 cut(s)	359, 444, 760
SsiI	CCGC	3 cut(s)	27, 432, 449
SstI	GAGCTC	2 cut(s)	109, 264
StyD4I	CCNGG	2 cut(s)	273, 617
TaqI	TCGA	5 cut(s)	200, 209, 402, 470, 711
TasI	AATT	3 cut(s)	359, 444, 760
TatI	WGTACW	1 cut(s)	590
TfiI	GAWTC	3 cut(s)	140, 467, 742
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TscAI	CASTG	2 cut(s)	561, 705
TseFI	GTSAC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	2 cut(s)	6, 124
TspGWI	ACGGA	1 cut(s)	358
TspRI	CASTG	2 cut(s)	561, 705
XagI	CCTNNNNNAGG	1 cut(s)	404
XapI	RAATTY	1 cut(s)	359
XhoI	CTCGAG	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.