RchiOBHm_Chr6g0250821

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0010601
Physical Location & Seq
Forward (+)
6163687 .. 6164989
1303 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22483

Sequence Viewer

Length: 867 bp
ATGTCGTCAACACCCTCTTCTTCTTCTACTCCTCCTCGTCAATGGAAGTATGATGTTTTTCTTAGTTTCAGAGGAGAAGACACCCGCTTGAATTTTGTGGACCATCTGTATGCTGCATTAGGTCAGAAAGGAATTGTCACCTTTAGAGATGACAAAAGTCTTGAGAGAGGAAAATCCATTTCGTCAGAACTTCTTAAAGCAATTGAGGAGTCAAAATTTGCTCTTGTCATTCTTTCACCAAACTATGCTTCTTCTTCATGGTGCTTAGACGAGCTTTTGAAGATTATTCAATGCAGAGAAGAAATGGGGCAACAAGTCATGCCAGTGTTCTACCAAGTAGATCCATCTCATGTGCGTAAGAACAAGGGATATTTTTTGCAGGCCTTTACAGAACACGAAGAAGTTCATTGGGAGAACAGGGATAAAGTAAGGAAGTGGAGGGCTGCTTTGACAGGCGTGGCCAATCTTTCTGGGTGGGATTTGAGGAACATGCATGAGGCAAAAGCTATCAAGAGTATTGTTAAAGATATACTAAATAAATCACAGTATTCATCTACAAGCGTTTACAAGGGCATGGTAGGAATGGATGTCCGTGTTGATGATTTACTGAGAAATCATATTCGTCCACATTTTGATGACGTGCGCATGATAGGGATCCATGGAATGCGGGGAATAGGTAAGACGGCAATTGCCCGAGCTCTTTATGATCAACTTCGTCAAGATTTTGACAGTAGCTGCGAGCCTTCCAATGTTAGAGAAGTGTTTAGCAAAGGTGGTATATATCCTTCACAGTATGAAATTAGTGACTGTTTTGACCATTGCTGCTTTCTTTCCAACGTTAGAGAAATGTCAAAAAAGATGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

288

Amino Acids

33.07

Weight (kDa)

8.43

Isoelectric Point (pI)

47.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 16 - 193 4.4e-59 TIR domain
TIR_2 PF13676 19 - 116 2.5e-18 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 644
AciI CCGC 2 cut(s) 85, 667
AclI AACGTT 1 cut(s) 837
AclWI GGATC 3 cut(s) 335, 649, 662
AcoI YGGCCR 1 cut(s) 459
AcsI RAATTY 2 cut(s) 91, 215
AgsI TTSAA 3 cut(s) 91, 280, 290
AjiI CACGTC 1 cut(s) 640
AjuI GAANNNNNNNTTGG 2 cut(s) 232, 264
AluBI AGCT 4 cut(s) 274, 506, 698, 735
AluI AGCT 4 cut(s) 274, 506, 698, 735
Alw21I GWGCWC 1 cut(s) 700
AlwI GGATC 3 cut(s) 335, 649, 662
AlwNI CAGNNNCTG 1 cut(s) 735
Ama87I CYCGRG 1 cut(s) 693
AoxI GGCC 2 cut(s) 381, 459
ApeKI GCWGC 4 cut(s) 113, 443, 735, 822
ApoI RAATTY 2 cut(s) 91, 215
Asp700I GAANNNNTTC 1 cut(s) 402
AspLEI GCGC 1 cut(s) 645
AspS9I GGNCC 1 cut(s) 100
AsuHPI GGTGA 2 cut(s) 130, 228
AvaI CYCGRG 1 cut(s) 693
AvaII GGWCC 1 cut(s) 100
BalI TGGCCA 1 cut(s) 461
BamHI GGATCC 1 cut(s) 654
BanII GRGCYC 1 cut(s) 700
BarI GAAGNNNNNNTAC 2 cut(s) 769, 801
BbsI GAAGAC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 700
BbvI GCAGC 4 cut(s) 100, 430, 722, 809
BccI CCATC 3 cut(s) 111, 352, 853
BceAI ACGGC 1 cut(s) 699
BclI TGATCA 1 cut(s) 706
BfaI CTAG 1 cut(s) 865
BisI GCNGC 4 cut(s) 114, 444, 736, 823
BlsI GCNGC 4 cut(s) 115, 445, 737, 824
Bme18I GGWCC 1 cut(s) 100
BmeT110I CYCGRG 1 cut(s) 693
BmgBI CACGTC 1 cut(s) 640
BmgT120I GGNCC 1 cut(s) 100
BmiI GGNNCC 1 cut(s) 656
BoxI GACNNNNGTC 1 cut(s) 156
BpiI GAAGAC 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 182
BsaBI GATNNNNATC 1 cut(s) 653
BsaJI CCNNGG 1 cut(s) 658
Bse1I ACTGG 1 cut(s) 323
Bse3DI GCAATG 1 cut(s) 817
Bse8I GATNNNNATC 1 cut(s) 653
BseDI CCNNGG 1 cut(s) 658
BseGI GGATG 1 cut(s) 592
BseJI GATNNNNATC 1 cut(s) 653
BseMI GCAATG 1 cut(s) 817
BseMII CTCAG 1 cut(s) 599
BseNI ACTGG 1 cut(s) 323
BseRI GAGGAG 4 cut(s) 21, 24, 87, 221
BseXI GCAGC 4 cut(s) 100, 430, 722, 809
BshFI GGCC 2 cut(s) 383, 461
BsiHKAI GWGCWC 1 cut(s) 700
BsiHKCI CYCGRG 1 cut(s) 693
BsmI GAATGC 1 cut(s) 669
BsnI GGCC 2 cut(s) 383, 461
BsoBI CYCGRG 1 cut(s) 693
Bsp1286I GDGCHC 1 cut(s) 700
Bsp143I GATC 3 cut(s) 340, 654, 706
Bsp19I CCATGG 1 cut(s) 658
BspACI CCGC 2 cut(s) 85, 667
BspANI GGCC 2 cut(s) 383, 461
BspCNI CTCAG 1 cut(s) 600
BspLI GGNNCC 1 cut(s) 656
BspPI GGATC 3 cut(s) 335, 649, 662
BsrDI GCAATG 1 cut(s) 817
BsrI ACTGG 1 cut(s) 323
BssECI CCNNGG 1 cut(s) 658
BssMI GATC 3 cut(s) 340, 654, 706
BssT1I CCWWGG 1 cut(s) 658
Bst4CI ACNGT 4 cut(s) 546, 731, 792, 809
Bst6I CTCTTC 1 cut(s) 22
BstC8I GCNNGC 2 cut(s) 381, 740
BstDEI CTNAG 3 cut(s) 62, 265, 608
BstDSI CCRYGG 1 cut(s) 658
BstF5I GGATG 1 cut(s) 592
BstHHI GCGC 1 cut(s) 645
BstKTI GATC 3 cut(s) 343, 657, 709
BstMBI GATC 3 cut(s) 340, 654, 706
BstNSI RCATGY 1 cut(s) 493
BstPAI GACNNNNGTC 1 cut(s) 156
BstV1I GCAGC 4 cut(s) 100, 430, 722, 809
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 2 cut(s) 340, 654
BstYI RGATCY 2 cut(s) 340, 654
BsuRI GGCC 2 cut(s) 383, 461
BtgI CCRYGG 1 cut(s) 658
BtrI CACGTC 1 cut(s) 640
BtsCI GGATG 1 cut(s) 592
BtsIMutI CAGTG 1 cut(s) 330
Cac8I GCNNGC 2 cut(s) 381, 740
CaiI CAGNNNCTG 1 cut(s) 735
CfoI GCGC 1 cut(s) 645
Cfr13I GGNCC 1 cut(s) 100
CviAII CATG 8 cut(s) 258, 319, 350, 490, 494, 574, 646, 659
CviJI RGCY 8 cut(s) 274, 383, 443, 461, 506, 698, 735, 742
CviKI_1 RGCY 8 cut(s) 274, 383, 443, 461, 506, 698, 735, 742
DdeI CTNAG 3 cut(s) 62, 265, 608
DpnI GATC 3 cut(s) 342, 656, 708
DpnII GATC 3 cut(s) 340, 654, 706
EaeI YGGCCR 1 cut(s) 459
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
Ecl136II GAGCTC 1 cut(s) 698
Eco130I CCWWGG 1 cut(s) 658
Eco147I AGGCCT 1 cut(s) 383
Eco24I GRGCYC 1 cut(s) 700
Eco47I GGWCC 1 cut(s) 100
Eco53kI GAGCTC 1 cut(s) 698
Eco88I CYCGRG 1 cut(s) 693
EcoICRI GAGCTC 1 cut(s) 698
EcoT14I CCWWGG 1 cut(s) 658
EcoT22I ATGCAT 1 cut(s) 495
EcoT38I GRGCYC 1 cut(s) 700
ErhI CCWWGG 1 cut(s) 658
FaeI CATG 8 cut(s) 261, 322, 353, 493, 497, 577, 649, 662
FatI CATG 8 cut(s) 257, 318, 349, 489, 493, 573, 645, 658
FauI CCCGC 2 cut(s) 92, 660
FbaI TGATCA 1 cut(s) 706
Fnu4HI GCNGC 4 cut(s) 114, 444, 736, 823
FokI GGATG 1 cut(s) 599
FriOI GRGCYC 1 cut(s) 700
Fsp4HI GCNGC 4 cut(s) 114, 444, 736, 823
FspAI RTGCGCAY 1 cut(s) 644
FspBI CTAG 1 cut(s) 865
FspI TGCGCA 1 cut(s) 644
GlaI GCGC 1 cut(s) 644
GluI GCNGC 4 cut(s) 114, 444, 736, 823
HaeIII GGCC 2 cut(s) 383, 461
HhaI GCGC 1 cut(s) 645
Hin1II CATG 8 cut(s) 261, 322, 353, 493, 497, 577, 649, 662
Hin6I GCGC 1 cut(s) 643
HinP1I GCGC 1 cut(s) 643
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 1 cut(s) 209
HphI GGTGA 2 cut(s) 130, 228
Hpy166II GTNNAC 4 cut(s) 9, 100, 565, 626
Hpy188I TCNGA 3 cut(s) 71, 126, 187
Hpy188III TCNNGA 3 cut(s) 161, 511, 719
Hpy8I GTNNAC 4 cut(s) 9, 100, 565, 626
HpyAV CCTTC 2 cut(s) 753, 795
HpyCH4III ACNGT 4 cut(s) 546, 731, 792, 809
HpyCH4IV ACGT 2 cut(s) 639, 837
HpyCH4V TGCA 4 cut(s) 116, 294, 379, 493
HpyF3I CTNAG 3 cut(s) 62, 265, 608
HpySE526I ACGT 2 cut(s) 639, 837
Hsp92II CATG 8 cut(s) 261, 322, 353, 493, 497, 577, 649, 662
HspAI GCGC 1 cut(s) 643
Ksp22I TGATCA 1 cut(s) 706
Kzo9I GATC 3 cut(s) 340, 654, 706
LpnPI CCDG 5 cut(s) 336, 365, 403, 438, 456
Lsp1109I GCAGC 4 cut(s) 100, 430, 722, 809
MaeI CTAG 1 cut(s) 865
MaeII ACGT 2 cut(s) 639, 837
MaeIII GTNAC 2 cut(s) 136, 803
MalI GATC 3 cut(s) 342, 656, 708
MboI GATC 3 cut(s) 340, 654, 706
MboII GAAGA 9 cut(s) 9, 12, 15, 89, 243, 246, 292, 311, 410
MfeI CAATTG 2 cut(s) 201, 687
MflI RGATCY 2 cut(s) 340, 654
MhlI GDGCHC 1 cut(s) 700
MlsI TGGCCA 1 cut(s) 461
MluCI AATT 6 cut(s) 91, 132, 201, 215, 687, 798
MluNI TGGCCA 1 cut(s) 461
MlyI GAGTC 1 cut(s) 218
MmeI TCCRAC 1 cut(s) 858
MnlI CCTC 9 cut(s) 25, 42, 45, 65, 161, 199, 432, 477, 490
Mox20I TGGCCA 1 cut(s) 461
Mph1103I ATGCAT 1 cut(s) 495
MroXI GAANNNNTTC 1 cut(s) 402
MscI TGGCCA 1 cut(s) 461
MseI TTAA 2 cut(s) 195, 522
MslI CAYNNNNRTG 3 cut(s) 108, 323, 633
Msp20I TGGCCA 1 cut(s) 461
MunI CAATTG 2 cut(s) 201, 687
Mva1269I GAATGC 1 cut(s) 669
NcoI CCATGG 1 cut(s) 658
NdeII GATC 3 cut(s) 340, 654, 706
NlaIII CATG 8 cut(s) 261, 322, 353, 493, 497, 577, 649, 662
NlaIV GGNNCC 1 cut(s) 656
NmuCI GTSAC 2 cut(s) 136, 803
NsbI TGCGCA 1 cut(s) 644
NsiI ATGCAT 1 cut(s) 495
NspI RCATGY 1 cut(s) 493
PceI AGGCCT 1 cut(s) 383
PctI GAATGC 1 cut(s) 669
PdmI GAANNNNTTC 1 cut(s) 402
PkrI GCNGC 4 cut(s) 115, 445, 737, 824
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
PshAI GACNNNNGTC 1 cut(s) 156
Psp124BI GAGCTC 1 cut(s) 700
Psp1406I AACGTT 1 cut(s) 837
PspN4I GGNNCC 1 cut(s) 656
PspPI GGNCC 1 cut(s) 100
PstNI CAGNNNCTG 1 cut(s) 735
PsuI RGATCY 2 cut(s) 340, 654
RseI CAYNNNNRTG 3 cut(s) 108, 323, 633
SacI GAGCTC 1 cut(s) 700
SaqAI TTAA 2 cut(s) 195, 522
SatI GCNGC 4 cut(s) 114, 444, 736, 823
Sau3AI GATC 3 cut(s) 340, 654, 706
Sau96I GGNCC 1 cut(s) 100
SchI GAGTC 1 cut(s) 218
SduI GDGCHC 1 cut(s) 700
SinI GGWCC 1 cut(s) 100
SmiMI CAYNNNNRTG 3 cut(s) 108, 323, 633
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 6 cut(s) 91, 132, 201, 215, 687, 798
SseBI AGGCCT 1 cut(s) 383
SsiI CCGC 2 cut(s) 85, 667
SspMI CTAG 1 cut(s) 865
SstI GAGCTC 1 cut(s) 700
StuI AGGCCT 1 cut(s) 383
StyI CCWWGG 1 cut(s) 658
TaaI ACNGT 4 cut(s) 546, 731, 792, 809
TaiI ACGT 2 cut(s) 642, 840
TasI AATT 6 cut(s) 91, 132, 201, 215, 687, 798
Tru1I TTAA 2 cut(s) 195, 522
Tru9I TTAA 2 cut(s) 195, 522
TscAI CASTG 1 cut(s) 330
TseFI GTSAC 2 cut(s) 136, 803
TseI GCWGC 4 cut(s) 113, 443, 735, 822
Tsp45I GTSAC 2 cut(s) 136, 803
TspDTI ATGAA 4 cut(s) 246, 395, 540, 810
TspGWI ACGGA 1 cut(s) 581
TspRI CASTG 1 cut(s) 330
VpaK11BI GGWCC 1 cut(s) 100
XapI RAATTY 2 cut(s) 91, 215
XceI RCATGY 1 cut(s) 493
XmnI GAANNNNTTC 1 cut(s) 402
XspI CTAG 1 cut(s) 865
Zsp2I ATGCAT 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.