Prupe.7G017000_v2.0.a1

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0010601
Physical Location & Seq
Forward (+)
2481889 .. 2482317
429 bp
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UTR
Exon/CDS
Intron
Prupe.7G017000.1

Sequence Viewer

Length: 429 bp
ATGTACACACAAAGAATATCTGCATCTTCTTCATCTACAACACCTCAATGGAAATATGATGTTTTTCTCAGTTTTAGAGGCGATGACACTCGGAAGGACTTTACAGACCACTTATATGAAACATTGAGAGCTCAAGGAATCATAACTCGTAGGGATGAGCCTAAAATTTCAAAGGGAAAAGCTATTTCTCGAGAACTGATTGCTGCAATTGAAGGATCAAGGTTTGCGCTTATTATCCTCTCACAAAATTATGCATCCTCAACATGGTGTTTGGATGAACTTCTACACATTCTTAAATTCATGCAAGCAAGAGAAGCAATGCTACCAATATATATCTCTTTTTATATTTTACTTATGGAATATGTTTTGCATTTGTTAAAGATTGTTTTGGAGAAGTTTGCATCACATAGAAGTTCCTTAATGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

143

Amino Acids

16.55

Weight (kDa)

9.04

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 223
AcsI RAATTY 2 cut(s) 165, 296
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 264
AgsI TTSAA 2 cut(s) 171, 212
AluBI AGCT 2 cut(s) 131, 182
AluI AGCT 2 cut(s) 131, 182
Alw21I GWGCWC 1 cut(s) 133
AlwI GGATC 1 cut(s) 223
Ama87I CYCGRG 1 cut(s) 189
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 2 cut(s) 165, 296
AspLEI GCGC 1 cut(s) 229
AvaI CYCGRG 1 cut(s) 189
BanII GRGCYC 1 cut(s) 133
BarI GAAGNNNNNNTAC 2 cut(s) 306, 338
Bbv12I GWGCWC 1 cut(s) 133
BbvI GCAGC 1 cut(s) 190
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
BmeT110I CYCGRG 1 cut(s) 189
BmsI GCATC 3 cut(s) 32, 263, 410
BpuEI CTTGAG 1 cut(s) 117
Bsc4I CCNNNNNNNGG 1 cut(s) 264
Bse3DI GCAATG 1 cut(s) 324
BseGI GGATG 3 cut(s) 160, 254, 280
BseLI CCNNNNNNNGG 1 cut(s) 264
BseMI GCAATG 1 cut(s) 324
BseMII CTCAG 1 cut(s) 82
BseXI GCAGC 1 cut(s) 190
BsiHKAI GWGCWC 1 cut(s) 133
BsiHKCI CYCGRG 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 264
BsoBI CYCGRG 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 133
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 1 cut(s) 215
BspCNI CTCAG 1 cut(s) 81
BspPI GGATC 1 cut(s) 223
BsrDI GCAATG 1 cut(s) 324
BsrGI TGTACA 1 cut(s) 3
BssMI GATC 1 cut(s) 215
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 1 cut(s) 68
BstF5I GGATG 3 cut(s) 160, 254, 280
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 1 cut(s) 218
BstMBI GATC 1 cut(s) 215
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstV1I GCAGC 1 cut(s) 190
BtgZI GCGATG 1 cut(s) 96
BtsCI GGATG 3 cut(s) 160, 254, 280
Cac8I GCNNGC 1 cut(s) 306
CfoI GCGC 1 cut(s) 229
Csp6I GTAC 1 cut(s) 4
CviAII CATG 2 cut(s) 264, 301
CviJI RGCY 3 cut(s) 131, 160, 182
CviKI_1 RGCY 3 cut(s) 131, 160, 182
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 68
DpnI GATC 1 cut(s) 217
DpnII GATC 1 cut(s) 215
Ecl136II GAGCTC 1 cut(s) 131
Eco24I GRGCYC 1 cut(s) 133
Eco53kI GAGCTC 1 cut(s) 131
Eco88I CYCGRG 1 cut(s) 189
EcoICRI GAGCTC 1 cut(s) 131
EcoT22I ATGCAT 1 cut(s) 256
EcoT38I GRGCYC 1 cut(s) 133
FaeI CATG 2 cut(s) 267, 304
FatI CATG 2 cut(s) 263, 300
Fnu4HI GCNGC 1 cut(s) 204
FokI GGATG 3 cut(s) 167, 241, 287
FriOI GRGCYC 1 cut(s) 133
Fsp4HI GCNGC 1 cut(s) 204
GlaI GCGC 1 cut(s) 228
GluI GCNGC 1 cut(s) 204
HhaI GCGC 1 cut(s) 229
Hin1II CATG 2 cut(s) 267, 304
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HinfI GANTC 1 cut(s) 138
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 2 cut(s) 189, 191
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 2 cut(s) 88, 206
HpyCH4V TGCA 6 cut(s) 23, 206, 254, 304, 370, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 1 cut(s) 68
Hsp92II CATG 2 cut(s) 267, 304
HspAI GCGC 1 cut(s) 227
Kzo9I GATC 1 cut(s) 215
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 3 cut(s) 32, 263, 410
MalI GATC 1 cut(s) 217
MboI GATC 1 cut(s) 215
MboII GAAGA 2 cut(s) 18, 21
MfeI CAATTG 1 cut(s) 207
MhlI GDGCHC 1 cut(s) 133
MluCI AATT 4 cut(s) 165, 207, 247, 296
MnlI CCTC 4 cut(s) 54, 71, 248, 268
Mph1103I ATGCAT 1 cut(s) 256
MseI TTAA 3 cut(s) 294, 377, 419
MslI CAYNNNNRTG 2 cut(s) 46, 114
MunI CAATTG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 314
NdeII GATC 1 cut(s) 215
NlaIII CATG 2 cut(s) 267, 304
NsiI ATGCAT 1 cut(s) 256
PaeR7I CTCGAG 1 cut(s) 189
PfeI GAWTC 1 cut(s) 138
PkrI GCNGC 1 cut(s) 205
Psp124BI GAGCTC 1 cut(s) 133
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 2 cut(s) 46, 114
SacI GAGCTC 1 cut(s) 133
SaqAI TTAA 3 cut(s) 294, 377, 419
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 1 cut(s) 215
SduI GDGCHC 1 cut(s) 133
SetI ASST 4 cut(s) 46, 133, 184, 224
SfaNI GCATC 3 cut(s) 32, 263, 410
Sfr274I CTCGAG 1 cut(s) 189
SlaI CTCGAG 1 cut(s) 189
SmiMI CAYNNNNRTG 2 cut(s) 46, 114
SmlI CTYRAG 2 cut(s) 132, 189
SmoI CTYRAG 2 cut(s) 132, 189
Sse9I AATT 4 cut(s) 165, 207, 247, 296
SstI GAGCTC 1 cut(s) 133
TaqI TCGA 1 cut(s) 190
TasI AATT 4 cut(s) 165, 207, 247, 296
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 1 cut(s) 138
Tru1I TTAA 3 cut(s) 294, 377, 419
Tru9I TTAA 3 cut(s) 294, 377, 419
TseI GCWGC 1 cut(s) 203
TspDTI ATGAA 4 cut(s) 21, 132, 289, 291
XapI RAATTY 2 cut(s) 165, 296
XhoI CTCGAG 1 cut(s) 189
Zsp2I ATGCAT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.