Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0010601

Physical Location & Seq

Genomic Coordinates Reverse (-)

9415926 .. 9417388

Gene Structure 1463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1115500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCCAATCAACTTGTCGCTTCTTCTTCCTTGCCTCCTTCATGGAGATATGATGTGTTTTTGAGTTTTAGAGGAGAGGATACACGCACCAATTTTACGGATCATTTATACAAAGCTTTGGTTGATAAGGGAATCAACACCTTCATTGATCGCGAACTTAGAAGAGGAGAAGAAATATCACCAACGCTCCTCCAAGTAATTGAAGAGTCAAGAATTTCTCTTGTCATATTCTCTAGAACCTATGCATCTTCAAGCTGGTGCTTGGACGAGCTTGTCAAGATTCTTCAATGTAGAGAATCAAAGCAACAAATCGTTTTGCCAGTTTTTTACAAGGTGGAACCGTCCCATGTACGAAAGCAAGAGAGTAGTTTCGGTAACGCGTTTACAGAACTTGTGAGCAAATCCGGCAACAACAACGAGAAGGTGCCCGTGTGGAAGAGAGCTCTTACAGAAGTAGCAAATTTGTCAGGACATCATGTCAAGGAGGAAGACTATGAAGCTACAATAATCAGCAACATTGTTAAGGAGATCTTAGCCCAAGTTCTTGATGGCACATATTTGAATGCTCTCCGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

193

Amino Acids

21.92

Weight (kDa)

5.87

Isoelectric Point (pI)

56.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	17 - 180	1.6e-57	TIR domain
TIR_2	PF13676	19 - 114	3.1e-16	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010601)

Species	Orthologous Gene IDs
malus_domestica	MD01G1189400.v1.1 MD01G1189500.v1.1 MD01G1190900.v1.1 MD02G1115500.v1.1 MD07G1015200.v1.1
prunus_persica	Prupe.7G017000_v2.0.a1
pyrus_communis	pycom01g20170 pycom01g20180
rosa_chinensis	RchiOBHm_Chr1g0375961 RchiOBHm_Chr6g0246441 RchiOBHm_Chr6g0250821
rosa_laevigata	RLG00000002905 RLG00000026640 RLG00000026645 RLG00000028594
rosa_multiflora	Rmu_sc0001066.1_g000002
rosa_roxburghii	Rroxscaffold_4G00305800
rosa_rugosa	Rorug02G0306400 Rorug05G0497800 Rorug07G0269300
rosa_wichuraiana	Rw6G016530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	272
AccB1I	GGYRCC	1 cut(s)	424
AccII	CGCG	2 cut(s)	153, 380
AclWI	GGATC	1 cut(s)	108
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	213, 460
AfaI	GTAC	1 cut(s)	351
AflIII	ACRYGT	1 cut(s)	378
AgsI	TTSAA	4 cut(s)	203, 252, 287, 562
AhdI	GACNNNNNGTC	1 cut(s)	476
AluBI	AGCT	5 cut(s)	116, 255, 271, 443, 500
AluI	AGCT	5 cut(s)	116, 255, 271, 443, 500
Alw21I	GWGCWC	1 cut(s)	445
AlwI	GGATC	1 cut(s)	108
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	2 cut(s)	213, 460
AsuHPI	GGTGA	1 cut(s)	171
BaeGI	GKGCMC	1 cut(s)	429
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	424
BanII	GRGCYC	1 cut(s)	445
BbsI	GAAGAC	1 cut(s)	495
Bbv12I	GWGCWC	1 cut(s)	445
BccI	CCATC	1 cut(s)	542
BciVI	GTATCC	1 cut(s)	73
BfaI	CTAG	1 cut(s)	234
BfuI	GTATCC	1 cut(s)	73
BglII	AGATCT	1 cut(s)	528
BmeRI	GACNNNNNGTC	1 cut(s)	476
BmiI	GGNNCC	2 cut(s)	339, 426
BmsI	GCATC	1 cut(s)	254
BpiI	GAAGAC	1 cut(s)	495
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bse1I	ACTGG	1 cut(s)	320
BseNI	ACTGG	1 cut(s)	320
BseRI	GAGGAG	3 cut(s)	87, 179, 180
BseSI	GKGCMC	1 cut(s)	429
Bsh1236I	CGCG	2 cut(s)	153, 380
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	424
BsiHKAI	GWGCWC	1 cut(s)	445
BsiSI	CCGG	1 cut(s)	405
BslFI	GGGAC	1 cut(s)	328
BsmFI	GGGAC	1 cut(s)	328
BsmI	GAATGC	1 cut(s)	568
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	429, 445
Bsp143I	GATC	3 cut(s)	100, 148, 528
Bsp68I	TCGCGA	1 cut(s)	153
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	2 cut(s)	153, 380
BspLI	GGNNCC	2 cut(s)	339, 426
BspPI	GGATC	1 cut(s)	108
BspT107I	GGYRCC	1 cut(s)	424
BsrI	ACTGG	1 cut(s)	320
BssMI	GATC	3 cut(s)	100, 148, 528
Bst4CI	ACNGT	1 cut(s)	342
Bst6I	CTCTTC	3 cut(s)	157, 198, 431
BstDEI	CTNAG	2 cut(s)	158, 532
BstFNI	CGCG	2 cut(s)	153, 380
BstKTI	GATC	3 cut(s)	103, 151, 531
BstMBI	GATC	3 cut(s)	100, 148, 528
BstMWI	GCNNNNNNNGC	1 cut(s)	405
BstSLI	GKGCMC	1 cut(s)	429
BstUI	CGCG	2 cut(s)	153, 380
BstV2I	GAAGAC	1 cut(s)	495
BstX2I	RGATCY	1 cut(s)	528
BstYI	RGATCY	1 cut(s)	528
BsuI	GTATCC	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	5
BtuMI	TCGCGA	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	350
CviAII	CATG	3 cut(s)	42, 347, 476
CviJI	RGCY	7 cut(s)	5, 116, 255, 271, 443, 500, 536
CviKI_1	RGCY	7 cut(s)	5, 116, 255, 271, 443, 500, 536
CviQI	GTAC	1 cut(s)	350
DdeI	CTNAG	2 cut(s)	158, 532
DpnI	GATC	3 cut(s)	102, 150, 530
DpnII	GATC	3 cut(s)	100, 148, 528
DrdI	GACNNNNNNGTC	1 cut(s)	272
DriI	GACNNNNNGTC	1 cut(s)	476
DseDI	GACNNNNNNGTC	1 cut(s)	272
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	157, 198, 431
Eam1105I	GACNNNNNGTC	1 cut(s)	476
EarI	CTCTTC	3 cut(s)	157, 198, 431
Ecl136II	GAGCTC	1 cut(s)	443
Eco24I	GRGCYC	1 cut(s)	445
Eco53kI	GAGCTC	1 cut(s)	443
EcoICRI	GAGCTC	1 cut(s)	443
EcoT22I	ATGCAT	1 cut(s)	247
EcoT38I	GRGCYC	1 cut(s)	445
FaeI	CATG	3 cut(s)	45, 350, 479
FaiI	YATR	9 cut(s)	43, 51, 109, 227, 243, 348, 477, 495, 556
FalI	AAGNNNNNCTT	2 cut(s)	515, 547
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	3 cut(s)	41, 346, 475
FriOI	GRGCYC	1 cut(s)	445
FspBI	CTAG	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	405
Hin1II	CATG	3 cut(s)	45, 350, 479
HindIII	AAGCTT	1 cut(s)	114
HinfI	GANTC	4 cut(s)	132, 206, 280, 296
HpaII	CCGG	1 cut(s)	405
HphI	GGTGA	1 cut(s)	171
Hpy166II	GTNNAC	1 cut(s)	384
Hpy188III	TCNNGA	6 cut(s)	152, 210, 234, 277, 468, 545
Hpy8I	GTNNAC	1 cut(s)	384
HpyAV	CCTTC	3 cut(s)	48, 151, 415
HpyCH4III	ACNGT	1 cut(s)	342
HpyCH4V	TGCA	1 cut(s)	245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	405
HpyF3I	CTNAG	2 cut(s)	158, 532
Hsp92II	CATG	3 cut(s)	45, 350, 479
Kzo9I	GATC	3 cut(s)	100, 148, 528
LmnI	GCTCC	1 cut(s)	192
LpnPI	CCDG	4 cut(s)	241, 333, 418, 453
LweI	GCATC	1 cut(s)	254
MaeI	CTAG	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	374
MalI	GATC	3 cut(s)	102, 150, 530
MboI	GATC	3 cut(s)	100, 148, 528
MboII	GAAGA	9 cut(s)	15, 18, 174, 182, 215, 240, 275, 448, 500
MflI	RGATCY	1 cut(s)	528
MhlI	GDGCHC	2 cut(s)	429, 445
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	91, 198, 213, 460
MluI	ACGCGT	1 cut(s)	378
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	215
MnlI	CCTC	6 cut(s)	45, 65, 70, 158, 200, 478
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	247
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	522, 577
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	405
Mva1269I	GAATGC	1 cut(s)	568
MvnI	CGCG	2 cut(s)	153, 380
MwoI	GCNNNNNNNGC	1 cut(s)	405
NdeII	GATC	3 cut(s)	100, 148, 528
NlaIII	CATG	3 cut(s)	45, 350, 479
NlaIV	GGNNCC	2 cut(s)	339, 426
NruI	TCGCGA	1 cut(s)	153
NsiI	ATGCAT	1 cut(s)	247
PctI	GAATGC	1 cut(s)	568
PfeI	GAWTC	3 cut(s)	132, 280, 296
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
Psp124BI	GAGCTC	1 cut(s)	445
PspN4I	GGNNCC	2 cut(s)	339, 426
PsuI	RGATCY	1 cut(s)	528
RruI	TCGCGA	1 cut(s)	153
RsaI	GTAC	1 cut(s)	351
RsaNI	GTAC	1 cut(s)	350
SacI	GAGCTC	1 cut(s)	445
SaqAI	TTAA	2 cut(s)	522, 577
Sau3AI	GATC	3 cut(s)	100, 148, 528
SchI	GAGTC	1 cut(s)	215
SduI	GDGCHC	2 cut(s)	429, 445
SetI	ASST	9 cut(s)	118, 143, 242, 257, 273, 336, 426, 445, 502
SfaNI	GCATC	1 cut(s)	254
Sse9I	AATT	4 cut(s)	91, 198, 213, 460
SspMI	CTAG	1 cut(s)	234
SstI	GAGCTC	1 cut(s)	445
TaaI	ACNGT	1 cut(s)	342
TasI	AATT	4 cut(s)	91, 198, 213, 460
TfiI	GAWTC	3 cut(s)	132, 280, 296
Tru1I	TTAA	2 cut(s)	522, 577
Tru9I	TTAA	2 cut(s)	522, 577
TspDTI	ATGAA	3 cut(s)	30, 133, 510
TspGWI	ACGGA	2 cut(s)	113, 560
XapI	RAATTY	2 cut(s)	213, 460
XbaI	TCTAGA	1 cut(s)	233
XcmI	CCANNNNNNNNNTGG	1 cut(s)	545
XspI	CTAG	1 cut(s)	234
Zsp2I	ATGCAT	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.