MD02G1242200.v1.1

Belongs to the glycosyl hydrolase 3 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
29251061 .. 29253249
2189 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1242200.v1.1.491

Sequence Viewer

Length: 1257 bp
ATGTTGAATATGGCGAAAGTAGCAGAGGAACACGTTGAAGCTCGCGTCAAACAACTCCTGCCTCGTATGACTTTGAAAGGCAAGGTTGGCCAGATGACCCTAATCGAGCGCCAGGTCGCCACTTCCGCTGCAGTTAGAGACCACTTCATAGGGAGTACATTCAGTGCTCCAGGCAACGTGCCCTGTGAAAAGGCTTCGCCGTCAGAATGGGCGGACATGGTGGATGGGCTTCAGAGGTCAGCGCTAACGTCGAGGCCTGGGATTCCTCTCATATATGCGACTGATGCGGTTCATGGCAACGGCAATGTTTATGGTGCTACTATATTCCCTCACAACGTTGGTCTTGGCGCCACCAGAGATGCGGATTTGGTTCGAAGGATTGGTGTGGCAACTGCTCTTGAAGCCAGGGCTTGTGGTTTTCAGTATATTATCGCTCCCTGTGTGGCTGTATGCAAAGATCCGAGATGGGGAAATTGCTACGAGAGTTACAGTGAAGACACTGAAATTGTATGCAAGATGACATCTATCGTTTCAGGCTTAACGGGGCAGCCTCCCCAAGGACATCCAGAGCGCTACCCTTTTATAGCGGGAAGGGAGAGAGGAGTTATATCAGTCGATATTTTATTATTCATGCTTCTTTTTCATGGAACATTTTGCATTTATCTCAGTTTGATAAGTTACACACTTGTACGTTTTCTCTGTTCCAAAGAATTTGGAAAAAGAACGTTGACATGTTTGAGCAACAACACTATTGCATGTGCCATGCATTATGTTGTGGAAGAGGGGAATGAGGGGGATGCTCTATTATCTTACGACGATTTAGAGAGGATTCATATGAAACCTTATCTGGACTGTATTTCTCAAGGAAGGATTCATATGAAACCTTATCTGGACTGTATTTCTCAAGGAGTTTGTACTGCTATTATGGCTTCCTATAACAGCTGGAATGGAGATAGAGTACATGGTCACCGTTTTCTCCTTACAGAAATCTTGAAAGATAAGCTAGGTTTTAAGGTAATTTTGATTTCTGACTGGGAAGGAATTGACCAACTTTGCGAACCTGAAGGTTCAGACTATCGTTTATGCATTTCCTTAACCATTAACGCAGGAATAGACATGGTCATGGTGCATTTCAGATATGAAAAATTCATCGAGGAATTAATATATCTTGTGGAATCCAGGGAGATACCAATGTCTAGGATAGATGATGCTATTGCAAGAATACTCAGAGTGAAGTTTAAACTTTGCAGGACGTAG

Protein Analysis

419

Amino Acids

46.72

Weight (kDa)

6.32

Isoelectric Point (pI)

33.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_3 PF00933 24 - 183 2.8e-27 Glycosyl hydrolase family 3 N terminal domain
Glyco_hydro_3 PF00933 291 - 411 7.3e-23 Glycosyl hydrolase family 3 N terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 347
AccII CGCG 1 cut(s) 45
AciI CCGC 5 cut(s) 126, 212, 287, 362, 587
AclI AACGTT 2 cut(s) 336, 725
AclWI GGATC 1 cut(s) 452
AcoI YGGCCR 1 cut(s) 88
AcsI RAATTY 2 cut(s) 710, 1145
AcuI CTGAAG 2 cut(s) 215, 1083
AcyI GRCGYC 1 cut(s) 348
AfaI GTAC 4 cut(s) 157, 690, 916, 960
AfeI AGCGCT 2 cut(s) 243, 572
AfiI CCNNNNNNNGG 2 cut(s) 467, 557
AflIII ACRYGT 2 cut(s) 31, 731
AgsI TTSAA 5 cut(s) 7, 38, 76, 401, 994
AjnI CCWGG 5 cut(s) 111, 169, 256, 404, 1178
AluBI AGCT 3 cut(s) 41, 942, 1003
AluI AGCT 3 cut(s) 41, 942, 1003
Alw21I GWGCWC 1 cut(s) 169
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 1 cut(s) 452
Aor51HI AGCGCT 2 cut(s) 243, 572
AoxI GGCC 2 cut(s) 88, 254
ApeKI GCWGC 2 cut(s) 128, 547
ApoI RAATTY 2 cut(s) 710, 1145
AseI ATTAAT 1 cut(s) 1160
AspLEI GCGC 4 cut(s) 111, 244, 350, 573
AsuHPI GGTGA 1 cut(s) 959
AsuII TTCGAA 1 cut(s) 373
BaeGI GKGCMC 1 cut(s) 183
BaeI ACNNNNGTAYC 2 cut(s) 1178, 1211
BalI TGGCCA 1 cut(s) 90
BanI GGYRCC 1 cut(s) 347
BbsI GAAGAC 1 cut(s) 501
Bbv12I GWGCWC 1 cut(s) 169
BbvI GCAGC 2 cut(s) 115, 559
BccI CCATC 2 cut(s) 218, 459
BceAI ACGGC 2 cut(s) 184, 316
BciT130I CCWGG 5 cut(s) 113, 171, 258, 406, 1180
BcoDI GTCTC 1 cut(s) 132
BfaI CTAG 2 cut(s) 1004, 1197
BfmI CTRYAG 1 cut(s) 129
BfoI RGCGCY 4 cut(s) 112, 245, 351, 574
BisI GCNGC 2 cut(s) 129, 548
BlsI GCNGC 2 cut(s) 130, 549
Bme1390I CCNGG 5 cut(s) 113, 171, 258, 406, 1180
BmiI GGNNCC 1 cut(s) 349
BmrFI CCNGG 5 cut(s) 113, 171, 258, 406, 1180
BmrI ACTGGG 1 cut(s) 1042
BmsI GCATC 4 cut(s) 274, 349, 787, 1198
BmuI ACTGGG 1 cut(s) 1042
BpiI GAAGAC 1 cut(s) 501
BpmI CTGGAG 1 cut(s) 153
Bpu14I TTCGAA 1 cut(s) 373
BpuEI CTTGAG 2 cut(s) 846, 888
BsaHI GRCGYC 1 cut(s) 348
BsaI GGTCTC 1 cut(s) 132
BsaJI CCNNGG 4 cut(s) 257, 405, 556, 1179
BsaXI ACNNNNNCTCC 2 cut(s) 942, 972
Bsc4I CCNNNNNNNGG 2 cut(s) 467, 557
Bse1I ACTGG 1 cut(s) 1037
Bse3DI GCAATG 1 cut(s) 310
BseBI CCWGG 5 cut(s) 113, 171, 258, 406, 1180
BseDI CCNNGG 4 cut(s) 257, 405, 556, 1179
BseGI GGATG 3 cut(s) 229, 562, 802
BseLI CCNNNNNNNGG 2 cut(s) 467, 557
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 2 cut(s) 679, 1240
BseNI ACTGG 1 cut(s) 1037
BseRI GAGGAG 1 cut(s) 615
BseSI GKGCMC 1 cut(s) 183
BseXI GCAGC 2 cut(s) 115, 559
Bsh1236I CGCG 1 cut(s) 45
BshFI GGCC 2 cut(s) 90, 256
BshNI GGYRCC 1 cut(s) 347
BsiHKAI GWGCWC 1 cut(s) 169
BslI CCNNNNNNNGG 2 cut(s) 467, 557
BsmAI GTCTC 1 cut(s) 132
BsnI GGCC 2 cut(s) 90, 256
Bso31I GGTCTC 1 cut(s) 132
Bsp119I TTCGAA 1 cut(s) 373
Bsp1286I GDGCHC 2 cut(s) 169, 183
Bsp143I GATC 1 cut(s) 457
BspACI CCGC 5 cut(s) 126, 212, 287, 362, 587
BspANI GGCC 2 cut(s) 90, 256
BspCNI CTCAG 2 cut(s) 678, 1239
BspFNI CGCG 1 cut(s) 45
BspLI GGNNCC 1 cut(s) 349
BspMAI CTGCAG 1 cut(s) 133
BspPI GGATC 1 cut(s) 452
BspT104I TTCGAA 1 cut(s) 373
BspT107I GGYRCC 1 cut(s) 347
BspTNI GGTCTC 1 cut(s) 132
BsrDI GCAATG 1 cut(s) 310
BsrI ACTGG 1 cut(s) 1037
BssECI CCNNGG 4 cut(s) 257, 405, 556, 1179
BssMI GATC 1 cut(s) 457
BssNI GRCGYC 1 cut(s) 348
BssT1I CCWWGG 1 cut(s) 556
Bst2UI CCWGG 5 cut(s) 113, 171, 258, 406, 1180
Bst4CI ACNGT 4 cut(s) 491, 854, 896, 971
Bst6I CTCTTC 1 cut(s) 774
BstACI GRCGYC 1 cut(s) 348
BstBI TTCGAA 1 cut(s) 373
BstC8I GCNNGC 1 cut(s) 43
BstDEI CTNAG 2 cut(s) 665, 1226
BstEII GGTNACC 1 cut(s) 965
BstENI CCTNNNNNAGG 1 cut(s) 555
BstF5I GGATG 3 cut(s) 229, 562, 802
BstFNI CGCG 1 cut(s) 45
BstH2I RGCGCY 4 cut(s) 112, 245, 351, 574
BstHHI GCGC 4 cut(s) 111, 244, 350, 573
BstKTI GATC 1 cut(s) 460
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 1 cut(s) 457
BstMWI GCNNNNNNNGC 6 cut(s) 20, 87, 125, 284, 401, 926
BstNI CCWGG 5 cut(s) 113, 171, 258, 406, 1180
BstNSI RCATGY 2 cut(s) 735, 759
BstPI GGTNACC 1 cut(s) 965
BstSCI CCNGG 5 cut(s) 111, 169, 256, 404, 1178
BstSFI CTRYAG 1 cut(s) 129
BstSLI GKGCMC 1 cut(s) 183
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 2 cut(s) 115, 559
BstV2I GAAGAC 1 cut(s) 501
BstX2I RGATCY 1 cut(s) 457
BstYI RGATCY 1 cut(s) 457
BsuRI GGCC 2 cut(s) 90, 256
BtsCI GGATG 3 cut(s) 229, 562, 802
BtsIMutI CAGTG 3 cut(s) 169, 496, 498
Cac8I GCNNGC 1 cut(s) 43
CfoI GCGC 4 cut(s) 111, 244, 350, 573
CseI GACGC 1 cut(s) 34
Csp6I GTAC 4 cut(s) 156, 689, 915, 959
CviQI GTAC 4 cut(s) 156, 689, 915, 959
DdeI CTNAG 2 cut(s) 665, 1226
DinI GGCGCC 1 cut(s) 349
DpnI GATC 1 cut(s) 459
DpnII GATC 1 cut(s) 457
DraI TTTAAA 1 cut(s) 1240
EaeI YGGCCR 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 774
EarI CTCTTC 1 cut(s) 774
EciI GGCGGA 1 cut(s) 227
Eco130I CCWWGG 1 cut(s) 556
Eco147I AGGCCT 1 cut(s) 256
Eco31I GGTCTC 1 cut(s) 132
Eco47III AGCGCT 2 cut(s) 243, 572
Eco57I CTGAAG 2 cut(s) 215, 1083
Eco91I GGTNACC 1 cut(s) 965
EcoNI CCTNNNNNAGG 1 cut(s) 555
EcoO65I GGTNACC 1 cut(s) 965
EcoRII CCWGG 5 cut(s) 111, 169, 256, 404, 1178
EcoT14I CCWWGG 1 cut(s) 556
EcoT22I ATGCAT 2 cut(s) 768, 1088
EgeI GGCGCC 1 cut(s) 349
EheI GGCGCC 1 cut(s) 349
ErhI CCWWGG 1 cut(s) 556
FauI CCCGC 1 cut(s) 580
FauNDI CATATG 2 cut(s) 834, 876
Fnu4HI GCNGC 2 cut(s) 129, 548
FokI GGATG 3 cut(s) 236, 549, 809
Fsp4HI GCNGC 2 cut(s) 129, 548
FspBI CTAG 2 cut(s) 1004, 1197
GlaI GCGC 4 cut(s) 110, 243, 349, 572
GluI GCNGC 2 cut(s) 129, 548
GsuI CTGGAG 1 cut(s) 153
HaeII RGCGCY 4 cut(s) 112, 245, 351, 574
HaeIII GGCC 2 cut(s) 90, 256
HgaI GACGC 1 cut(s) 34
HhaI GCGC 4 cut(s) 111, 244, 350, 573
Hin1I GRCGYC 1 cut(s) 348
Hin6I GCGC 4 cut(s) 109, 242, 348, 571
HinP1I GCGC 4 cut(s) 109, 242, 348, 571
HincII GTYRAC 1 cut(s) 729
HindII GTYRAC 1 cut(s) 729
HinfI GANTC 4 cut(s) 262, 829, 871, 1175
HphI GGTGA 1 cut(s) 959
Hpy166II GTNNAC 1 cut(s) 729
Hpy188I TCNGA 7 cut(s) 205, 234, 462, 1030, 1072, 1136, 1229
Hpy188III TCNNGA 5 cut(s) 398, 566, 848, 890, 991
Hpy8I GTNNAC 1 cut(s) 729
Hpy99I CGWCG 2 cut(s) 253, 818
HpyAV CCTTC 5 cut(s) 369, 585, 861, 1031, 1058
HpyCH4III ACNGT 4 cut(s) 491, 854, 896, 971
HpyCH4IV ACGT 7 cut(s) 33, 177, 248, 336, 691, 725, 1253
HpyF10VI GCNNNNNNNGC 6 cut(s) 20, 87, 125, 284, 401, 926
HpyF3I CTNAG 2 cut(s) 665, 1226
HpySE526I ACGT 7 cut(s) 33, 177, 248, 336, 691, 725, 1253
Hsp92I GRCGYC 1 cut(s) 348
HspAI GCGC 4 cut(s) 109, 242, 348, 571
KasI GGCGCC 1 cut(s) 347
Kzo9I GATC 1 cut(s) 457
LmnI GCTCC 2 cut(s) 172, 439
Lsp1109I GCAGC 2 cut(s) 115, 559
LweI GCATC 4 cut(s) 274, 349, 787, 1198
MaeI CTAG 2 cut(s) 1004, 1197
MaeII ACGT 7 cut(s) 33, 177, 248, 336, 691, 725, 1253
MaeIII GTNAC 3 cut(s) 485, 677, 965
MalI GATC 1 cut(s) 459
MboI GATC 1 cut(s) 457
MboII GAAGA 2 cut(s) 506, 791
MflI RGATCY 1 cut(s) 457
MhlI GDGCHC 2 cut(s) 169, 183
MlsI TGGCCA 1 cut(s) 90
MluCI AATT 7 cut(s) 472, 504, 710, 1017, 1041, 1145, 1157
MluNI TGGCCA 1 cut(s) 90
Mly113I GGCGCC 1 cut(s) 348
Mox20I TGGCCA 1 cut(s) 90
Mph1103I ATGCAT 2 cut(s) 768, 1088
MscI TGGCCA 1 cut(s) 90
MseI TTAA 6 cut(s) 539, 1011, 1094, 1101, 1160, 1239
MslI CAYNNNNRTG 1 cut(s) 1121
Msp20I TGGCCA 1 cut(s) 90
MspA1I CMGCKG 2 cut(s) 128, 942
MspR9I CCNGG 5 cut(s) 113, 171, 258, 406, 1180
MssI GTTTAAAC 1 cut(s) 1240
MvaI CCWGG 5 cut(s) 113, 171, 258, 406, 1180
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 6 cut(s) 20, 87, 125, 284, 401, 926
NarI GGCGCC 1 cut(s) 348
NdeI CATATG 2 cut(s) 834, 876
NdeII GATC 1 cut(s) 457
NlaIV GGNNCC 1 cut(s) 349
NmuCI GTSAC 1 cut(s) 965
NsiI ATGCAT 2 cut(s) 768, 1088
NspI RCATGY 2 cut(s) 735, 759
NspV TTCGAA 1 cut(s) 373
PceI AGGCCT 1 cut(s) 256
PciI ACATGT 1 cut(s) 731
PfeI GAWTC 4 cut(s) 262, 829, 871, 1175
PflFI GACNNNGTC 1 cut(s) 1118
PkrI GCNGC 2 cut(s) 130, 549
PluTI GGCGCC 1 cut(s) 351
PmeI GTTTAAAC 1 cut(s) 1240
PscI ACATGT 1 cut(s) 731
PshBI ATTAAT 1 cut(s) 1160
Psp1406I AACGTT 2 cut(s) 336, 725
Psp6I CCWGG 5 cut(s) 111, 169, 256, 404, 1178
PspEI GGTNACC 1 cut(s) 965
PspGI CCWGG 5 cut(s) 111, 169, 256, 404, 1178
PspN4I GGNNCC 1 cut(s) 349
PstI CTGCAG 1 cut(s) 133
PsuI RGATCY 1 cut(s) 457
PsyI GACNNNGTC 1 cut(s) 1118
PvuII CAGCTG 1 cut(s) 942
RsaI GTAC 4 cut(s) 157, 690, 916, 960
RsaNI GTAC 4 cut(s) 156, 689, 915, 959
RseI CAYNNNNRTG 1 cut(s) 1121
SaqAI TTAA 6 cut(s) 539, 1011, 1094, 1101, 1160, 1239
SatI GCNGC 2 cut(s) 129, 548
Sau3AI GATC 1 cut(s) 457
ScrFI CCNGG 5 cut(s) 113, 171, 258, 406, 1180
SduI GDGCHC 2 cut(s) 169, 183
SfaNI GCATC 4 cut(s) 274, 349, 787, 1198
SfcI CTRYAG 1 cut(s) 129
SfoI GGCGCC 1 cut(s) 349
SfuI TTCGAA 1 cut(s) 373
SmiMI CAYNNNNRTG 1 cut(s) 1121
SmlI CTYRAG 2 cut(s) 861, 903
SmoI CTYRAG 2 cut(s) 861, 903
Sse9I AATT 7 cut(s) 472, 504, 710, 1017, 1041, 1145, 1157
SseBI AGGCCT 1 cut(s) 256
SsiI CCGC 5 cut(s) 126, 212, 287, 362, 587
SspDI GGCGCC 1 cut(s) 347
SspMI CTAG 2 cut(s) 1004, 1197
StuI AGGCCT 1 cut(s) 256
StyD4I CCNGG 5 cut(s) 111, 169, 256, 404, 1178
StyI CCWWGG 1 cut(s) 556
TaaI ACNGT 4 cut(s) 491, 854, 896, 971
TaiI ACGT 7 cut(s) 36, 180, 251, 339, 694, 728, 1256
TaqI TCGA 5 cut(s) 105, 251, 373, 615, 1152
TasI AATT 7 cut(s) 472, 504, 710, 1017, 1041, 1145, 1157
TatI WGTACW 3 cut(s) 155, 914, 958
TfiI GAWTC 4 cut(s) 262, 829, 871, 1175
Tru1I TTAA 6 cut(s) 539, 1011, 1094, 1101, 1160, 1239
Tru9I TTAA 6 cut(s) 539, 1011, 1094, 1101, 1160, 1239
TscAI CASTG 3 cut(s) 169, 496, 505
TseFI GTSAC 1 cut(s) 965
TseI GCWGC 2 cut(s) 128, 547
Tsp45I GTSAC 1 cut(s) 965
TspRI CASTG 3 cut(s) 169, 496, 505
Tth111I GACNNNGTC 1 cut(s) 1118
VspI ATTAAT 1 cut(s) 1160
XagI CCTNNNNNAGG 1 cut(s) 555
XapI RAATTY 2 cut(s) 710, 1145
XceI RCATGY 2 cut(s) 735, 759
XspI CTAG 2 cut(s) 1004, 1197
Zsp2I ATGCAT 2 cut(s) 768, 1088
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.