Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001232

Physical Location & Seq

Genomic Coordinates Reverse (-)

14635754 .. 14637020

Gene Structure 1267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G092600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGCACAGAGATTTAGCACGTGAAGCAGTTCGGAGGTCATTGGTTCTTTTGAAAAATGGAAAGGATCCAATGGAACCTTTTCTTCCCTTAGAAAGAAAGGCTAAAAGAATACTCATTGCTGGAACTCATGCCGATGATCTTGGAAATCAGTGTGGAGGGTGGACAGCTACAAAATATGGTAGCAGTGGAAGGATAACAATTGGGACAACCATCTTGGAAGCTATTAAGAAGGCAGTTGGAGATGATACAGAAATCATTTATGAGAAGTATCCCTCGACAGAGACCTTAGCACGGCAAGATATCACTTTCGCGATTGTAGCTGTTGGTGAAGCTCCATATGCAGAAGGCAAGGGCGACAATTCAAAGCTTGTGATCCCCTTGAATGGAGCTGATATCATAAGCTCAGTTGCTGACAAAATCCCCTCATTGGTAATTCTGATTTCTGGAAGACCCTTAGTTTTAGAGCCCTGGCTATTGGAAAAGATAGATGCTCTTGTTGCTGCCTGGTTACCTGGTACTGAAGGAGATGGAATTGCAGATGTTATCTTTGGAGATCACGATTTCGAGGGCCAGCTCCCAGTGACATGGTTTAAAAGGGTTGAACAGCTGCCTGTGAATGCTGGAGACAATTCATATGACCCTTTATATCCTCTTGGCTTTGGGCTGGCATGCAATAAGGAGAGAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

230

Amino Acids

24.84

Weight (kDa)

5.08

Isoelectric Point (pI)

33.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47000 AT3G47000 AT3G47000 AT3G47010 AT3G47010 AT3G47010 AT3G47040 AT3G47040 AT3G47040 AT3G47050
fragaria_vesca	FvH4_3g38160 FvH4_3g38160 FvH4_4g11940
malus_domestica	MD02G1242000.v1.1 MD02G1242100.v1.1 MD02G1242200.v1.1 MD02G1242300.v1.1 MD11G1080700.v1.1
prunus_persica	Prupe.2G092300_v2.0.a1 Prupe.2G092300_v2.0.a1 Prupe.2G092300_v2.0.a1 Prupe.2G092600_v2.0.a1 Prupe.2G092900_v2.0.a1 Prupe.2G092900_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1
pyrus_communis	pycom02g20900 pycom11g06800 pycom11g06860
rosa_chinensis	RchiOBHm_Chr5g0068591 RchiOBHm_Chr6g0246121
rosa_laevigata	RLG00000035983 RLG00000036820 RLG00000036839
rosa_multiflora	Rmu_sc0004721.1_g000003
rosa_roxburghii	Rroxscaffold_1G00003560 Rroxscaffold_1G00012260 Rroxscaffold_3G00247860 Rroxscaffold_7G00214870
rosa_rugosa	Rorug05G0391700 Rorug05G0464600 Rorug05G0465200 Rorug05G0465800
rosa_samantha	Rh5AG449400 Rh5BG467600 Rh5DG481000 Rh5DG551200 Rh5DG552100 Rh7AG258000 Rh7CG274700 Rh7DG265200
rosa_wichuraiana	Rw5G041960 Rw5G048090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	311
AclWI	GGATC	3 cut(s)	59, 72, 367
AcuI	CTGAAG	1 cut(s)	540
AcvI	CACGTG	1 cut(s)	20
AfaI	GTAC	1 cut(s)	517
AfiI	CCNNNNNNNGG	3 cut(s)	291, 383, 427
AgsI	TTSAA	4 cut(s)	52, 363, 382, 602
AjnI	CCWGG	3 cut(s)	467, 503, 511
AluBI	AGCT	9 cut(s)	167, 221, 320, 332, 367, 389, 402, 574, 607
AluI	AGCT	9 cut(s)	167, 221, 320, 332, 367, 389, 402, 574, 607
Alw26I	GTCTC	2 cut(s)	275, 618
AlwI	GGATC	3 cut(s)	59, 72, 367
AlwNI	CAGNNNCTG	1 cut(s)	410
AoxI	GGCC	1 cut(s)	568
ApeKI	GCWGC	2 cut(s)	500, 607
Asp700I	GAANNNNTTC	2 cut(s)	27, 78
AspS9I	GGNCC	1 cut(s)	568
AsuHPI	GGTGA	1 cut(s)	338
BamHI	GGATCC	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	468
BbrPI	CACGTG	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	454
BbvI	GCAGC	2 cut(s)	487, 594
BccI	CCATC	2 cut(s)	218, 521
BceAI	ACGGC	1 cut(s)	308
BciT130I	CCWGG	3 cut(s)	469, 505, 513
BciVI	GTATCC	1 cut(s)	279
BcoDI	GTCTC	2 cut(s)	275, 618
BfuI	GTATCC	1 cut(s)	279
BisI	GCNGC	2 cut(s)	501, 608
BlsI	GCNGC	2 cut(s)	502, 609
Bme1390I	CCNGG	3 cut(s)	469, 505, 513
BmgT120I	GGNCC	1 cut(s)	568
BmiI	GGNNCC	2 cut(s)	66, 75
BmrFI	CCNGG	3 cut(s)	469, 505, 513
BmrI	ACTGGG	1 cut(s)	572
BmsI	GCATC	1 cut(s)	478
BmuI	ACTGGG	1 cut(s)	572
BpiI	GAAGAC	1 cut(s)	454
BpmI	CTGGAG	1 cut(s)	642
Bpu10I	CCTNAGC	1 cut(s)	286
BsaAI	YACGTR	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	467
Bsc4I	CCNNNNNNNGG	3 cut(s)	291, 383, 427
Bse1I	ACTGG	1 cut(s)	578
Bse3DI	GCAATG	1 cut(s)	114
BseBI	CCWGG	3 cut(s)	469, 505, 513
BseDI	CCNNGG	1 cut(s)	467
BseLI	CCNNNNNNNGG	3 cut(s)	291, 383, 427
BseMI	GCAATG	1 cut(s)	114
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	1 cut(s)	578
BseXI	GCAGC	2 cut(s)	487, 594
Bsh1236I	CGCG	1 cut(s)	311
BshFI	GGCC	1 cut(s)	570
BslFI	GGGAC	1 cut(s)	217
BslI	CCNNNNNNNGG	3 cut(s)	291, 383, 427
BsmAI	GTCTC	2 cut(s)	275, 618
BsmFI	GGGAC	1 cut(s)	217
BsmI	GAATGC	1 cut(s)	622
BsnI	GGCC	1 cut(s)	570
Bso31I	GGTCTC	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp143I	GATC	4 cut(s)	64, 136, 372, 553
Bsp68I	TCGCGA	1 cut(s)	311
BspANI	GGCC	1 cut(s)	570
BspCNI	CTCAG	1 cut(s)	416
BspFNI	CGCG	1 cut(s)	311
BspLI	GGNNCC	2 cut(s)	66, 75
BspPI	GGATC	3 cut(s)	59, 72, 367
BspTNI	GGTCTC	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	578
BssECI	CCNNGG	1 cut(s)	467
BssMI	GATC	4 cut(s)	64, 136, 372, 553
Bst2UI	CCWGG	3 cut(s)	469, 505, 513
BstBAI	YACGTR	1 cut(s)	20
BstC8I	GCNNGC	3 cut(s)	572, 666, 670
BstDEI	CTNAG	4 cut(s)	88, 286, 403, 454
BstEII	GGTNACC	1 cut(s)	507
BstFNI	CGCG	1 cut(s)	311
BstKTI	GATC	4 cut(s)	67, 139, 375, 556
BstMAI	GTCTC	2 cut(s)	275, 618
BstMBI	GATC	4 cut(s)	64, 136, 372, 553
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 317, 338, 497
BstNI	CCWGG	3 cut(s)	469, 505, 513
BstNSI	RCATGY	1 cut(s)	672
BstPI	GGTNACC	1 cut(s)	507
BstSCI	CCNGG	3 cut(s)	467, 503, 511
BstUI	CGCG	1 cut(s)	311
BstV1I	GCAGC	2 cut(s)	487, 594
BstV2I	GAAGAC	1 cut(s)	454
BstX2I	RGATCY	1 cut(s)	64
BstXI	CCANNNNNNTGG	1 cut(s)	585
BstYI	RGATCY	1 cut(s)	64
BsuI	GTATCC	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	570
BtsI	GCAGTG	1 cut(s)	190
BtsIMutI	CAGTG	3 cut(s)	155, 190, 585
BtuMI	TCGCGA	1 cut(s)	311
Cac8I	GCNNGC	3 cut(s)	572, 666, 670
CaiI	CAGNNNCTG	1 cut(s)	410
Cfr13I	GGNCC	1 cut(s)	568
CsiI	ACCWGGT	1 cut(s)	511
Csp6I	GTAC	1 cut(s)	516
CviAII	CATG	3 cut(s)	128, 585, 669
CviQI	GTAC	1 cut(s)	516
DdeI	CTNAG	4 cut(s)	88, 286, 403, 454
DpnI	GATC	4 cut(s)	66, 138, 374, 555
DpnII	GATC	4 cut(s)	64, 136, 372, 553
DraI	TTTAAA	1 cut(s)	592
Eco24I	GRGCYC	1 cut(s)	468
Eco31I	GGTCTC	1 cut(s)	275
Eco32I	GATATC	2 cut(s)	301, 394
Eco57I	CTGAAG	1 cut(s)	540
Eco72I	CACGTG	1 cut(s)	20
Eco91I	GGTNACC	1 cut(s)	507
EcoO65I	GGTNACC	1 cut(s)	507
EcoRII	CCWGG	3 cut(s)	467, 503, 511
EcoRV	GATATC	2 cut(s)	301, 394
EcoT38I	GRGCYC	1 cut(s)	468
FaeI	CATG	3 cut(s)	131, 588, 672
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	3 cut(s)	127, 584, 668
FauNDI	CATATG	2 cut(s)	337, 634
Fnu4HI	GCNGC	2 cut(s)	501, 608
FriOI	GRGCYC	1 cut(s)	468
Fsp4HI	GCNGC	2 cut(s)	501, 608
GluI	GCNGC	2 cut(s)	501, 608
GsuI	CTGGAG	1 cut(s)	642
HaeIII	GGCC	1 cut(s)	570
Hin1II	CATG	3 cut(s)	131, 588, 672
HindIII	AAGCTT	1 cut(s)	365
HphI	GGTGA	1 cut(s)	338
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	2 cut(s)	33, 438
Hpy188III	TCNNGA	3 cut(s)	310, 444, 557
Hpy8I	GTNNAC	1 cut(s)	162
HpyAV	CCTTC	4 cut(s)	183, 223, 338, 515
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	4 cut(s)	4, 341, 536, 672
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 317, 338, 497
HpyF3I	CTNAG	4 cut(s)	88, 286, 403, 454
HpySE526I	ACGT	1 cut(s)	19
Hsp92II	CATG	3 cut(s)	131, 588, 672
Kzo9I	GATC	4 cut(s)	64, 136, 372, 553
LmnI	GCTCC	3 cut(s)	337, 386, 579
Lsp1109I	GCAGC	2 cut(s)	487, 594
LweI	GCATC	1 cut(s)	478
MabI	ACCWGGT	1 cut(s)	511
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	2 cut(s)	507, 580
MalI	GATC	4 cut(s)	66, 138, 374, 555
MboI	GATC	4 cut(s)	64, 136, 372, 553
MboII	GAAGA	2 cut(s)	74, 459
MfeI	CAATTG	1 cut(s)	198
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	468
MluCI	AATT	5 cut(s)	198, 358, 432, 531, 628
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	7 cut(s)	27, 149, 283, 433, 559, 660, 677
MroXI	GAANNNNTTC	2 cut(s)	27, 78
MseI	TTAA	3 cut(s)	225, 591, 688
MslI	CAYNNNNRTG	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	607
MspR9I	CCNGG	3 cut(s)	469, 505, 513
MunI	CAATTG	1 cut(s)	198
Mva1269I	GAATGC	1 cut(s)	622
MvaI	CCWGG	3 cut(s)	469, 505, 513
MvnI	CGCG	1 cut(s)	311
MwoI	GCNNNNNNNGC	4 cut(s)	23, 317, 338, 497
NdeI	CATATG	2 cut(s)	337, 634
NdeII	GATC	4 cut(s)	64, 136, 372, 553
NlaIII	CATG	3 cut(s)	131, 588, 672
NlaIV	GGNNCC	2 cut(s)	66, 75
NmuCI	GTSAC	1 cut(s)	580
NruI	TCGCGA	1 cut(s)	311
NspI	RCATGY	1 cut(s)	672
PaeI	GCATGC	1 cut(s)	672
PctI	GAATGC	1 cut(s)	622
PdmI	GAANNNNTTC	2 cut(s)	27, 78
PkrI	GCNGC	2 cut(s)	502, 609
PmaCI	CACGTG	1 cut(s)	20
PmlI	CACGTG	1 cut(s)	20
Ppu21I	YACGTR	1 cut(s)	20
Psp6I	CCWGG	3 cut(s)	467, 503, 511
PspCI	CACGTG	1 cut(s)	20
PspEI	GGTNACC	1 cut(s)	507
PspGI	CCWGG	3 cut(s)	467, 503, 511
PspN4I	GGNNCC	2 cut(s)	66, 75
PspPI	GGNCC	1 cut(s)	568
PstNI	CAGNNNCTG	1 cut(s)	410
PsuI	RGATCY	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	607
RruI	TCGCGA	1 cut(s)	311
RsaI	GTAC	1 cut(s)	517
RsaNI	GTAC	1 cut(s)	516
RseI	CAYNNNNRTG	1 cut(s)	132
SaqAI	TTAA	3 cut(s)	225, 591, 688
SatI	GCNGC	2 cut(s)	501, 608
Sau3AI	GATC	4 cut(s)	64, 136, 372, 553
Sau96I	GGNCC	1 cut(s)	568
ScrFI	CCNGG	3 cut(s)	469, 505, 513
SduI	GDGCHC	1 cut(s)	468
SexAI	ACCWGGT	1 cut(s)	511
SfaNI	GCATC	1 cut(s)	478
SmiMI	CAYNNNNRTG	1 cut(s)	132
SphI	GCATGC	1 cut(s)	672
Sse9I	AATT	5 cut(s)	198, 358, 432, 531, 628
StyD4I	CCNGG	3 cut(s)	467, 503, 511
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	2 cut(s)	275, 564
TasI	AATT	5 cut(s)	198, 358, 432, 531, 628
Tru1I	TTAA	3 cut(s)	225, 591, 688
Tru9I	TTAA	3 cut(s)	225, 591, 688
TscAI	CASTG	3 cut(s)	155, 190, 585
TseFI	GTSAC	1 cut(s)	580
TseI	GCWGC	2 cut(s)	500, 607
Tsp45I	GTSAC	1 cut(s)	580
TspDTI	ATGAA	1 cut(s)	621
TspRI	CASTG	3 cut(s)	155, 190, 585
XceI	RCATGY	1 cut(s)	672
XmnI	GAANNNNTTC	2 cut(s)	27, 78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.