Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001232

Physical Location & Seq

Genomic Coordinates Reverse (-)

53422385 .. 53422900

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0391700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGCTGAAGTTCAGTACTTTGATTGACATGCAACGTGTCTGGACATTGGGGACTGTTCGTCTCCACTCGGGAATGCTTCGGCTAATCAAATGGTCACTGAAGTTCTCTCCCTCAACTTACAAAAACACCTTTGCTCAAGTTTGGGTAAGATTTTTGGATCTAGGGTTTGCATTCTGTGACCAGCAAACCCTATTTGAAATTGCTGCTGGTGTGGGTACGCCTCTGAAGCTTGACCCGCCAACAAGGAACAGGACGGTGGGTCTATATGCCAGAGTCTTAATCGATGTTGATTTCTCGCACCCATTTCCAGATAAGCTTAGAATAACTAGGGAAAAATGTGAAGTAGTGGTGGTCGGTGTAGAATTTGAATCCGAACCAGAAATATGTACCAAGTGCGGGATTGTTGGTCATACAGTTGTTTTCTGCAGATCTCTTTCTACCCTAATAGAGGAGGATGCGAATGTTGGCTTTGACACACTAGTTGATCATGGTAAATCTTTGGTGCGGTCAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

171

Amino Acids

19.37

Weight (kDa)

8.31

Isoelectric Point (pI)

29.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47000 AT3G47000 AT3G47000 AT3G47010 AT3G47010 AT3G47010 AT3G47040 AT3G47040 AT3G47040 AT3G47050
fragaria_vesca	FvH4_3g38160 FvH4_3g38160 FvH4_4g11940
malus_domestica	MD02G1242000.v1.1 MD02G1242100.v1.1 MD02G1242200.v1.1 MD02G1242300.v1.1 MD11G1080700.v1.1
prunus_persica	Prupe.2G092300_v2.0.a1 Prupe.2G092300_v2.0.a1 Prupe.2G092300_v2.0.a1 Prupe.2G092600_v2.0.a1 Prupe.2G092900_v2.0.a1 Prupe.2G092900_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1
pyrus_communis	pycom02g20900 pycom11g06800 pycom11g06860
rosa_chinensis	RchiOBHm_Chr5g0068591 RchiOBHm_Chr6g0246121
rosa_laevigata	RLG00000035983 RLG00000036820 RLG00000036839
rosa_multiflora	Rmu_sc0004721.1_g000003
rosa_roxburghii	Rroxscaffold_1G00003560 Rroxscaffold_1G00012260 Rroxscaffold_3G00247860 Rroxscaffold_7G00214870
rosa_rugosa	Rorug05G0391700 Rorug05G0464600 Rorug05G0465200 Rorug05G0465800
rosa_samantha	Rh5AG449400 Rh5BG467600 Rh5DG481000 Rh5DG551200 Rh5DG552100 Rh7AG258000 Rh7CG274700 Rh7DG265200
rosa_wichuraiana	Rw5G041960 Rw5G048090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	236, 396, 505
AclWI	GGATC	1 cut(s)	165
AcsI	RAATTY	1 cut(s)	362
AcuI	CTGAAG	3 cut(s)	26, 119, 245
AfaI	GTAC	3 cut(s)	16, 217, 388
AfiI	CCNNNNNNNGG	2 cut(s)	396, 448
AflIII	ACRYGT	1 cut(s)	34
AgsI	TTSAA	2 cut(s)	197, 368
AhdI	GACNNNNNGTC	2 cut(s)	57, 258
AhlI	ACTAGT	1 cut(s)	478
AluBI	AGCT	2 cut(s)	229, 316
AluI	AGCT	2 cut(s)	229, 316
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	1 cut(s)	165
Ama87I	CYCGRG	1 cut(s)	67
ApeKI	GCWGC	1 cut(s)	203
ApoI	RAATTY	1 cut(s)	362
AvaI	CYCGRG	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	190
BclI	TGATCA	1 cut(s)	484
BcoDI	GTCTC	1 cut(s)	65
BcuI	ACTAGT	1 cut(s)	478
BfaI	CTAG	3 cut(s)	161, 327, 479
BfmI	CTRYAG	1 cut(s)	424
BglII	AGATCT	1 cut(s)	428
BisI	GCNGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	205
BmcAI	AGTACT	1 cut(s)	16
BmeRI	GACNNNNNGTC	2 cut(s)	57, 258
BmeT110I	CYCGRG	1 cut(s)	67
BmsI	GCATC	1 cut(s)	445
BpuEI	CTTGAG	1 cut(s)	120
Bsa29I	ATCGAT	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	2 cut(s)	396, 448
BseCI	ATCGAT	1 cut(s)	282
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	2 cut(s)	396, 448
BseRI	GAGGAG	1 cut(s)	464
BseXI	GCAGC	1 cut(s)	190
BshVI	ATCGAT	1 cut(s)	282
BsiHKCI	CYCGRG	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	64
BslI	CCNNNNNNNGG	2 cut(s)	396, 448
BsmAI	GTCTC	1 cut(s)	65
BsmBI	CGTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	64
BsmI	GAATGC	2 cut(s)	78, 170
BsoBI	CYCGRG	1 cut(s)	67
Bsp143I	GATC	3 cut(s)	157, 428, 484
BspACI	CCGC	3 cut(s)	236, 396, 505
BspDI	ATCGAT	1 cut(s)	282
BspMAI	CTGCAG	1 cut(s)	428
BspPI	GGATC	1 cut(s)	165
BssMI	GATC	3 cut(s)	157, 428, 484
Bst4CI	ACNGT	3 cut(s)	55, 256, 415
BstDEI	CTNAG	1 cut(s)	317
BstENI	CCTNNNNNAGG	1 cut(s)	446
BstF5I	GGATG	1 cut(s)	460
BstKTI	GATC	3 cut(s)	160, 431, 487
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	3 cut(s)	157, 428, 484
BstMWI	GCNNNNNNNGC	2 cut(s)	226, 235
BstNSI	RCATGY	1 cut(s)	31
BstSFI	CTRYAG	1 cut(s)	424
BstV1I	GCAGC	1 cut(s)	190
BstX2I	RGATCY	2 cut(s)	157, 428
BstYI	RGATCY	2 cut(s)	157, 428
Bsu15I	ATCGAT	1 cut(s)	282
BsuTUI	ATCGAT	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	460
BtsIMutI	CAGTG	1 cut(s)	95
ClaI	ATCGAT	1 cut(s)	282
Csp6I	GTAC	3 cut(s)	15, 216, 387
CviAII	CATG	2 cut(s)	28, 488
CviJI	RGCY	4 cut(s)	82, 229, 316, 468
CviKI_1	RGCY	4 cut(s)	82, 229, 316, 468
CviQI	GTAC	3 cut(s)	15, 216, 387
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	3 cut(s)	159, 430, 486
DpnII	GATC	3 cut(s)	157, 428, 484
DriI	GACNNNNNGTC	2 cut(s)	57, 258
Eam1105I	GACNNNNNGTC	2 cut(s)	57, 258
Eco57I	CTGAAG	3 cut(s)	26, 119, 245
Eco88I	CYCGRG	1 cut(s)	67
EcoNI	CCTNNNNNAGG	1 cut(s)	446
Esp3I	CGTCTC	1 cut(s)	65
FaeI	CATG	2 cut(s)	31, 491
FaiI	YATR	6 cut(s)	29, 265, 267, 385, 411, 489
FaqI	GGGAC	1 cut(s)	64
FatI	CATG	2 cut(s)	27, 487
FauI	CCCGC	2 cut(s)	243, 389
FbaI	TGATCA	1 cut(s)	484
Fnu4HI	GCNGC	1 cut(s)	204
FokI	GGATG	1 cut(s)	467
Fsp4HI	GCNGC	1 cut(s)	204
FspBI	CTAG	3 cut(s)	161, 327, 479
GluI	GCNGC	1 cut(s)	204
Hin1II	CATG	2 cut(s)	31, 491
HindIII	AAGCTT	2 cut(s)	227, 314
HinfI	GANTC	2 cut(s)	273, 368
Hpy188I	TCNGA	2 cut(s)	225, 373
Hpy188III	TCNNGA	3 cut(s)	40, 69, 308
HpyCH4III	ACNGT	3 cut(s)	55, 256, 415
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	3 cut(s)	31, 170, 426
HpyF10VI	GCNNNNNNNGC	2 cut(s)	226, 235
HpyF3I	CTNAG	1 cut(s)	317
HpySE526I	ACGT	1 cut(s)	34
Hsp92II	CATG	2 cut(s)	31, 491
Ksp22I	TGATCA	1 cut(s)	484
Kzo9I	GATC	3 cut(s)	157, 428, 484
LpnPI	CCDG	7 cut(s)	25, 192, 194, 235, 283, 321, 390
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	1 cut(s)	445
MaeI	CTAG	3 cut(s)	161, 327, 479
MaeII	ACGT	1 cut(s)	34
MaeIII	GTNAC	2 cut(s)	93, 176
MalI	GATC	3 cut(s)	159, 430, 486
MboI	GATC	3 cut(s)	157, 428, 484
MflI	RGATCY	2 cut(s)	157, 428
MluCI	AATT	2 cut(s)	198, 362
MlyI	GAGTC	1 cut(s)	282
MnlI	CCTC	4 cut(s)	121, 231, 442, 445
MseI	TTAA	1 cut(s)	278
Mva1269I	GAATGC	2 cut(s)	78, 170
MwoI	GCNNNNNNNGC	2 cut(s)	226, 235
NdeII	GATC	3 cut(s)	157, 428, 484
NlaIII	CATG	2 cut(s)	31, 491
NmuCI	GTSAC	2 cut(s)	93, 176
NspI	RCATGY	1 cut(s)	31
PctI	GAATGC	2 cut(s)	78, 170
PfeI	GAWTC	1 cut(s)	368
PkrI	GCNGC	1 cut(s)	205
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
PstI	CTGCAG	1 cut(s)	428
PsuI	RGATCY	2 cut(s)	157, 428
RsaI	GTAC	3 cut(s)	16, 217, 388
RsaNI	GTAC	3 cut(s)	15, 216, 387
SaqAI	TTAA	1 cut(s)	278
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	3 cut(s)	157, 428, 484
ScaI	AGTACT	1 cut(s)	16
SchI	GAGTC	1 cut(s)	282
SetI	ASST	5 cut(s)	37, 131, 231, 318, 515
SfaNI	GCATC	1 cut(s)	445
SfcI	CTRYAG	1 cut(s)	424
SmlI	CTYRAG	1 cut(s)	135
SmoI	CTYRAG	1 cut(s)	135
SpeI	ACTAGT	1 cut(s)	478
Sse9I	AATT	2 cut(s)	198, 362
SsiI	CCGC	3 cut(s)	236, 396, 505
SspMI	CTAG	3 cut(s)	161, 327, 479
TaaI	ACNGT	3 cut(s)	55, 256, 415
TaiI	ACGT	1 cut(s)	37
TaqI	TCGA	1 cut(s)	282
TasI	AATT	2 cut(s)	198, 362
TatI	WGTACW	1 cut(s)	14
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TscAI	CASTG	1 cut(s)	102
TseFI	GTSAC	2 cut(s)	93, 176
TseI	GCWGC	1 cut(s)	203
Tsp45I	GTSAC	2 cut(s)	93, 176
TspRI	CASTG	1 cut(s)	102
XagI	CCTNNNNNAGG	1 cut(s)	446
XapI	RAATTY	1 cut(s)	362
XceI	RCATGY	1 cut(s)	31
XspI	CTAG	3 cut(s)	161, 327, 479
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.