Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001232

Physical Location & Seq

Genomic Coordinates Forward (+)

85102243 .. 85105070

Gene Structure 2828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG552100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGTTTGAATTATGTGACAGAGATGCAGATTTGGCTCAAAGGATTGGTGAGGCAACTGCTCTTGAAGTCAGGGCTAGTGGCATGCACTACACTTTTGCCCCCTGTGTAGCTCTTGCAAAGATTGCATTTGGTACTGCTGTGATACTTGTAAACAACACTATTGCATGCGCCAAGCATTTTGTTGGAGATGGTGGTACACATACAGGTGTAAATGAGGGAAATACCATATCATCTTACGATGACTTAGAGAGGATTCATATGGCACCTTATCTGGACTGCATTTCTCAAGGAGTTTCCACCATTATGGCATCTTATTCCAGCTGGAATGGAAATAGACTACATGCTGATCGTTTTCTCCTGACTAAAATCTTGAAAGAAAAGCTAGGATTTAAGGGAATTGTGATTTCTGACTGGGATGGTATTGAAACACTCAGTAAGCCTCAAGGGTCAAACTATCGTTTCTGCGTTTTATCTGCTGTCAATGCTGGAATTGACATGTTTATGGTGCCTTTCAGATTTGAAAATTTTGTAGATGATTTAGTGAATCTGGTGGAACATGGGGAGATACCAATGTCCAGGATAGATGATGCTGTTGAGAGAATACTGAGGGTAAAGTTTGTTGCTAGTCTTTTTGAACATCCCTTTTCTGATAGATCTTTGCTGGACAAAGTTGGTTGTAAGCTGCATAGGGATCTGGCATGCAAAGCTGTTCGCAAGTCATTGGTTCTGTTGAAGAATGGAAAGGAGCCAAGAAAACCTTTTCTTCCATTAGATAGAAAAGCCAAAAGAATACTGGTTACTGGAACGCATGCTGATGATCTTGGATATCAGTGTGGAGGATGGACAGTTACTAAGTCTGGATTAAGTGGCAAGTTCACCATTGGCACAACCATCTTGGAAGCTGTCAAGAAGGCAGTTGGAGAGGAAACAGAAATAATTTATGAGCAACTGCCATCGACAGATACCCTAGCACGTAAAGATATCTCTTTTGCAGTTGCTGTTGGTGAAGGTTCATATGCCGAATGCAAGGGTGACAACTTGGAGCTTGTGATTCCTTTGGATGGACCCGATGTAATAAGCTCAGTTGCTGACAGAATCCCCACATTGGTGATTCTGATATCTGGAAGACCCTTAACTGTAGAGCCAATTCTCTTGGAAAAGATGGATGCTCTTGTTGCTGCTTGGTTGCCTGGTACTGAAGGAGAGGGAATTGCAGATGTTATCTTTGGAGATTATAGCTTCGAGGGCAAGCTACCGGTGACATGGTTTAAAAGTGTTGAACAGCTCCCATTGGATGTCGGAAGCAACTCATATGACCCTTTATATCCTCTTGAGTTTGGATTGACATGCAATACGGAGAAAGTTATACACCAAGCAGATTTTGATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

463

Amino Acids

50.77

Weight (kDa)

5.21

Isoelectric Point (pI)

23.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3	PF00933	54 - 204	2.5e-35	Glycosyl hydrolase family 3 N terminal domain
Glyco_hydro_3_C	PF01915	241 - 448	6.6e-35	Glycosyl hydrolase family 3 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47000 AT3G47000 AT3G47000 AT3G47010 AT3G47010 AT3G47010 AT3G47040 AT3G47040 AT3G47040 AT3G47050
fragaria_vesca	FvH4_3g38160 FvH4_3g38160 FvH4_4g11940
malus_domestica	MD02G1242000.v1.1 MD02G1242100.v1.1 MD02G1242200.v1.1 MD02G1242300.v1.1 MD11G1080700.v1.1
prunus_persica	Prupe.2G092300_v2.0.a1 Prupe.2G092300_v2.0.a1 Prupe.2G092300_v2.0.a1 Prupe.2G092600_v2.0.a1 Prupe.2G092900_v2.0.a1 Prupe.2G092900_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1
pyrus_communis	pycom02g20900 pycom11g06800 pycom11g06860
rosa_chinensis	RchiOBHm_Chr5g0068591 RchiOBHm_Chr6g0246121
rosa_laevigata	RLG00000035983 RLG00000036820 RLG00000036839
rosa_multiflora	Rmu_sc0004721.1_g000003
rosa_roxburghii	Rroxscaffold_1G00003560 Rroxscaffold_1G00012260 Rroxscaffold_3G00247860 Rroxscaffold_7G00214870
rosa_rugosa	Rorug05G0391700 Rorug05G0464600 Rorug05G0465200 Rorug05G0465800
rosa_samantha	Rh5AG449400 Rh5BG467600 Rh5DG481000 Rh5DG551200 Rh5DG552100 Rh7AG258000 Rh7CG274700 Rh7DG265200
rosa_wichuraiana	Rw5G041960 Rw5G048090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	262, 505
AclWI	GGATC	1 cut(s)	699
AcsI	RAATTY	1 cut(s)	523
AcuI	CTGAAG	1 cut(s)	1218
AfaI	GTAC	3 cut(s)	133, 196, 1195
AfiI	CCNNNNNNNGG	2 cut(s)	1061, 1105
AflIII	ACRYGT	1 cut(s)	495
AgeI	ACCGGT	1 cut(s)	1255
AgsI	TTSAA	8 cut(s)	8, 65, 373, 425, 521, 635, 733, 1280
AjnI	CCWGG	2 cut(s)	575, 1189
AleI	CACNNNNGTG	1 cut(s)	1106
AlwI	GGATC	1 cut(s)	699
AlwNI	CAGNNNCTG	2 cut(s)	998, 1088
ApeKI	GCWGC	2 cut(s)	682, 1178
ApoI	RAATTY	1 cut(s)	523
AsiGI	ACCGGT	1 cut(s)	1255
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	1064
AsuHPI	GGTGA	6 cut(s)	59, 868, 1016, 1043, 1120, 1270
AvaII	GGWCC	1 cut(s)	1064
BaeI	ACNNNNGTAYC	4 cut(s)	123, 156, 557, 590
BanI	GGYRCC	2 cut(s)	262, 505
BbsI	GAAGAC	1 cut(s)	1132
BbvI	GCAGC	2 cut(s)	669, 1165
BccI	CCATC	7 cut(s)	182, 410, 834, 899, 961, 1055, 1156
BciT130I	CCWGG	2 cut(s)	577, 1191
BfaI	CTAG	4 cut(s)	75, 383, 624, 968
BfmI	CTRYAG	1 cut(s)	1137
BglII	AGATCT	1 cut(s)	653
BisI	GCNGC	2 cut(s)	683, 1179
BlsI	GCNGC	2 cut(s)	684, 1180
Bme1390I	CCNGG	2 cut(s)	577, 1191
Bme18I	GGWCC	1 cut(s)	1064
BmgT120I	GGNCC	1 cut(s)	1064
BmiI	GGNNCC	4 cut(s)	264, 507, 747, 1066
BmrFI	CCNGG	2 cut(s)	577, 1191
BmrI	ACTGGG	1 cut(s)	421
BmsI	GCATC	4 cut(s)	13, 317, 577, 1156
BmuI	ACTGGG	1 cut(s)	421
BpiI	GAAGAC	1 cut(s)	1132
BpuEI	CTTGAG	3 cut(s)	270, 426, 1352
BsaAI	YACGTR	1 cut(s)	974
BsaWI	WCCGGW	1 cut(s)	1255
Bsc4I	CCNNNNNNNGG	2 cut(s)	1061, 1105
Bse118I	RCCGGY	1 cut(s)	1255
Bse1I	ACTGG	3 cut(s)	416, 798, 805
BseBI	CCWGG	2 cut(s)	577, 1191
BseGI	GGATG	6 cut(s)	421, 637, 845, 1066, 1171, 1300
BseLI	CCNNNNNNNGG	2 cut(s)	1061, 1105
BseMII	CTCAG	3 cut(s)	445, 596, 1095
BseNI	ACTGG	3 cut(s)	416, 798, 805
BseXI	GCAGC	2 cut(s)	669, 1165
BshNI	GGYRCC	2 cut(s)	262, 505
BshTI	ACCGGT	1 cut(s)	1255
BsiSI	CCGG	1 cut(s)	1256
BslI	CCNNNNNNNGG	2 cut(s)	1061, 1105
BsmI	GAATGC	1 cut(s)	1028
Bsp143I	GATC	4 cut(s)	346, 653, 691, 817
BspCNI	CTCAG	3 cut(s)	444, 597, 1094
BspLI	GGNNCC	4 cut(s)	264, 507, 747, 1066
BspPI	GGATC	1 cut(s)	699
BspT107I	GGYRCC	2 cut(s)	262, 505
BsrFI	RCCGGY	1 cut(s)	1255
BsrI	ACTGG	3 cut(s)	416, 798, 805
BssAI	RCCGGY	1 cut(s)	1255
BssMI	GATC	4 cut(s)	346, 653, 691, 817
Bst2UI	CCWGG	2 cut(s)	577, 1191
Bst4CI	ACNGT	2 cut(s)	847, 1138
BstAPI	GCANNNNNTGC	1 cut(s)	122
BstBAI	YACGTR	1 cut(s)	974
BstC8I	GCNNGC	5 cut(s)	83, 166, 700, 810, 1250
BstDEI	CTNAG	5 cut(s)	244, 431, 605, 852, 1081
BstF5I	GGATG	6 cut(s)	421, 637, 845, 1066, 1171, 1300
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	4 cut(s)	349, 656, 694, 820
BstMBI	GATC	4 cut(s)	346, 653, 691, 817
BstMWI	GCNNNNNNNGC	6 cut(s)	32, 122, 482, 704, 1175, 1245
BstNI	CCWGG	2 cut(s)	577, 1191
BstNSI	RCATGY	7 cut(s)	85, 168, 344, 499, 702, 812, 1350
BstSCI	CCNGG	2 cut(s)	575, 1189
BstSFI	CTRYAG	1 cut(s)	1137
BstV1I	GCAGC	2 cut(s)	669, 1165
BstV2I	GAAGAC	1 cut(s)	1132
BstX2I	RGATCY	2 cut(s)	653, 691
BstXI	CCANNNNNNTGG	1 cut(s)	304
BstYI	RGATCY	2 cut(s)	653, 691
BtsCI	GGATG	6 cut(s)	421, 637, 845, 1066, 1171, 1300
BtsIMutI	CAGTG	1 cut(s)	836
Cac8I	GCNNGC	5 cut(s)	83, 166, 700, 810, 1250
CaiI	CAGNNNCTG	2 cut(s)	998, 1088
CfoI	GCGC	1 cut(s)	170
Cfr10I	RCCGGY	1 cut(s)	1255
Cfr13I	GGNCC	1 cut(s)	1064
Csp6I	GTAC	3 cut(s)	132, 195, 1194
CspAI	ACCGGT	1 cut(s)	1255
CviAII	CATG	9 cut(s)	82, 165, 341, 496, 557, 699, 809, 1263, 1347
CviQI	GTAC	3 cut(s)	132, 195, 1194
DdeI	CTNAG	5 cut(s)	244, 431, 605, 852, 1081
DpnI	GATC	4 cut(s)	348, 655, 693, 819
DpnII	GATC	4 cut(s)	346, 653, 691, 817
DraI	TTTAAA	1 cut(s)	1270
Eco32I	GATATC	3 cut(s)	827, 982, 1119
Eco47I	GGWCC	1 cut(s)	1064
Eco57I	CTGAAG	1 cut(s)	1218
EcoRII	CCWGG	2 cut(s)	575, 1189
EcoRV	GATATC	3 cut(s)	827, 982, 1119
FaeI	CATG	9 cut(s)	85, 168, 344, 499, 560, 702, 812, 1266, 1350
FalI	AAGNNNNNCTT	2 cut(s)	742, 774
FatI	CATG	9 cut(s)	81, 164, 340, 495, 556, 698, 808, 1262, 1346
FauNDI	CATATG	3 cut(s)	258, 1015, 1312
Fnu4HI	GCNGC	2 cut(s)	683, 1179
FokI	GGATG	6 cut(s)	428, 624, 852, 1073, 1178, 1307
Fsp4HI	GCNGC	2 cut(s)	683, 1179
FspBI	CTAG	4 cut(s)	75, 383, 624, 968
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	2 cut(s)	683, 1179
HapII	CCGG	1 cut(s)	1256
HhaI	GCGC	1 cut(s)	170
Hin1II	CATG	9 cut(s)	85, 168, 344, 499, 560, 702, 812, 1266, 1350
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HinfI	GANTC	5 cut(s)	253, 544, 1051, 1095, 1111
HpaII	CCGG	1 cut(s)	1256
HphI	GGTGA	6 cut(s)	59, 868, 1016, 1043, 1120, 1270
Hpy166II	GTNNAC	3 cut(s)	151, 197, 876
Hpy188I	TCNGA	5 cut(s)	409, 515, 649, 1116, 1301
Hpy188III	TCNNGA	8 cut(s)	62, 272, 358, 370, 858, 907, 1122, 1331
Hpy8I	GTNNAC	3 cut(s)	151, 197, 876
HpyAV	CCTTC	3 cut(s)	904, 1001, 1193
HpyCH4III	ACNGT	2 cut(s)	847, 1138
HpyCH4IV	ACGT	1 cut(s)	973
HpyF10VI	GCNNNNNNNGC	6 cut(s)	32, 122, 482, 704, 1175, 1245
HpyF3I	CTNAG	5 cut(s)	244, 431, 605, 852, 1081
HpySE526I	ACGT	1 cut(s)	973
Hsp92II	CATG	9 cut(s)	85, 168, 344, 499, 560, 702, 812, 1266, 1350
HspAI	GCGC	1 cut(s)	168
Kzo9I	GATC	4 cut(s)	346, 653, 691, 817
LmnI	GCTCC	3 cut(s)	745, 1042, 1290
Lsp1109I	GCAGC	2 cut(s)	669, 1165
LweI	GCATC	4 cut(s)	13, 317, 577, 1156
MaeI	CTAG	4 cut(s)	75, 383, 624, 968
MaeII	ACGT	1 cut(s)	973
MaeIII	GTNAC	5 cut(s)	14, 796, 847, 1031, 1258
MalI	GATC	4 cut(s)	348, 655, 693, 819
MboI	GATC	4 cut(s)	346, 653, 691, 817
MboII	GAAGA	3 cut(s)	745, 755, 1137
MflI	RGATCY	2 cut(s)	653, 691
MluCI	AATT	7 cut(s)	8, 396, 489, 523, 936, 1146, 1209
MmeI	TCCRAC	3 cut(s)	163, 898, 1279
MseI	TTAA	4 cut(s)	390, 863, 1133, 1269
MslI	CAYNNNNRTG	5 cut(s)	204, 302, 500, 813, 1106
MspA1I	CMGCKG	1 cut(s)	321
MspI	CCGG	1 cut(s)	1256
MspR9I	CCNGG	2 cut(s)	577, 1191
Mva1269I	GAATGC	1 cut(s)	1028
MvaI	CCWGG	2 cut(s)	577, 1191
MwoI	GCNNNNNNNGC	6 cut(s)	32, 122, 482, 704, 1175, 1245
NdeI	CATATG	3 cut(s)	258, 1015, 1312
NdeII	GATC	4 cut(s)	346, 653, 691, 817
NlaIII	CATG	9 cut(s)	85, 168, 344, 499, 560, 702, 812, 1266, 1350
NlaIV	GGNNCC	4 cut(s)	264, 507, 747, 1066
NmuCI	GTSAC	3 cut(s)	14, 1031, 1258
NspI	RCATGY	7 cut(s)	85, 168, 344, 499, 702, 812, 1350
OliI	CACNNNNGTG	1 cut(s)	1106
PaeI	GCATGC	4 cut(s)	85, 168, 702, 812
PciI	ACATGT	1 cut(s)	495
PctI	GAATGC	1 cut(s)	1028
PfeI	GAWTC	5 cut(s)	253, 544, 1051, 1095, 1111
PfoI	TCCNGGA	1 cut(s)	575
PinAI	ACCGGT	1 cut(s)	1255
PkrI	GCNGC	2 cut(s)	684, 1180
Ppu21I	YACGTR	1 cut(s)	974
PscI	ACATGT	1 cut(s)	495
Psp6I	CCWGG	2 cut(s)	575, 1189
PspGI	CCWGG	2 cut(s)	575, 1189
PspN4I	GGNNCC	4 cut(s)	264, 507, 747, 1066
PspPI	GGNCC	1 cut(s)	1064
PstNI	CAGNNNCTG	2 cut(s)	998, 1088
PsuI	RGATCY	2 cut(s)	653, 691
PvuII	CAGCTG	1 cut(s)	321
RsaI	GTAC	3 cut(s)	133, 196, 1195
RsaNI	GTAC	3 cut(s)	132, 195, 1194
RseI	CAYNNNNRTG	5 cut(s)	204, 302, 500, 813, 1106
SaqAI	TTAA	4 cut(s)	390, 863, 1133, 1269
SatI	GCNGC	2 cut(s)	683, 1179
Sau3AI	GATC	4 cut(s)	346, 653, 691, 817
Sau96I	GGNCC	1 cut(s)	1064
ScrFI	CCNGG	2 cut(s)	577, 1191
SfaNI	GCATC	4 cut(s)	13, 317, 577, 1156
SfcI	CTRYAG	1 cut(s)	1137
SinI	GGWCC	1 cut(s)	1064
SmiMI	CAYNNNNRTG	5 cut(s)	204, 302, 500, 813, 1106
SmlI	CTYRAG	3 cut(s)	285, 441, 1331
SmoI	CTYRAG	3 cut(s)	285, 441, 1331
SphI	GCATGC	4 cut(s)	85, 168, 702, 812
Sse9I	AATT	7 cut(s)	8, 396, 489, 523, 936, 1146, 1209
SspMI	CTAG	4 cut(s)	75, 383, 624, 968
StyD4I	CCNGG	2 cut(s)	575, 1189
TaaI	ACNGT	2 cut(s)	847, 1138
TaiI	ACGT	1 cut(s)	976
TaqI	TCGA	2 cut(s)	956, 1242
TasI	AATT	7 cut(s)	8, 396, 489, 523, 936, 1146, 1209
TfiI	GAWTC	5 cut(s)	253, 544, 1051, 1095, 1111
Tru1I	TTAA	4 cut(s)	390, 863, 1133, 1269
Tru9I	TTAA	4 cut(s)	390, 863, 1133, 1269
TscAI	CASTG	1 cut(s)	836
TseFI	GTSAC	3 cut(s)	14, 1031, 1258
TseI	GCWGC	2 cut(s)	682, 1178
Tsp45I	GTSAC	3 cut(s)	14, 1031, 1258
TspDTI	ATGAA	2 cut(s)	245, 1002
TspGWI	ACGGA	1 cut(s)	1370
TspRI	CASTG	1 cut(s)	836
VpaK11BI	GGWCC	1 cut(s)	1064
XapI	RAATTY	1 cut(s)	523
XceI	RCATGY	7 cut(s)	85, 168, 344, 499, 702, 812, 1350
XcmI	CCANNNNNNNNNTGG	1 cut(s)	790
XspI	CTAG	4 cut(s)	75, 383, 624, 968

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.