Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001232

Physical Location & Seq

Genomic Coordinates Forward (+)

41225705 .. 41228866

Gene Structure 3162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00247860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGTTGACGGGTTTCAGAGGTGTGCATTGGAAACCCGGCTCCGGATTCCATTGAAATATGGGATTGATGCTGTTCATGGGAACAATAGCGTCTATGGTGCCACTATATTTACTCATAATGTTGGTCTCGGGGCTACCAGAGATGCGGATTTGGCTCAAAGGATTGGTGAAGCAACTGCTCTTGAAGTCAGGGCTAGTGGCATTCACTACACTTTTTGCTCCCTGTGTAGCTTTGGTACTGCTGTGATAGTATGCAGAGATCCCAGATGGGGACGATGCTACGAGAGCTGCAGTGAAGAAACTGAAATTGTTAGCAAGATGACATCCATTATCTCAGGCTTGCAGGGGAAGCCACCCCAAGGGCATGAAAATGGTTACCCTTTTATAATGGGAAGAAACAACACTATTGCATGTGCCAAGCATTTTGTTGGAGATGGGGGTACACAGAAAGGTGTAAATGAGGGGAATGCTTTGCTGCAGGGAATTGTGATTTCTGTCTGGGATGGTATCGAAACACTCAGTGAGCCTCAAGGGTCAAACTATCATTTCTGCGTTTTATCTGCTGTCAATGCTGGAATTGACATGTTTATAGTGCCTTTCAGATTTGAAAATTTTGTGGATGATTTAGCAAATCTGGTAGAACATGGGGAGATACCATTGTCCAGGATAGATGATGCTGTTGAGAGAATACTGAGAGTAAAGTTTGTTGCTGGTCTTTTTGAACATTCCTTTTCTGATAGATCTTTGCTGGACAAAGTTGGTTTGAGGGATCTGGCATGCGAAGCTGTTCGCAAGTCATTGGTTCTGTTGAAGGATGGAAAGGAGCCAAGAAAACCTTTTCTTCCATTAGATAGAAAAGCCAAAAGAACACTGGTTACCGGAACGCATGCTGATGATCTTGGATATCAGCCTGAGTTGGATTTCTTGAGGTTCGTATGCCGAAGCAAGGGCGACAACTTGGAGCTTGTGATTCCTTTTAATGGACCTGATGTAATAAGCTCAGTTGCTGACAGAATCCCCACATTGGTGATTCTGATATCTAGAAGACCCTTAACTGTAGAGCCAAGTCTCTTGGAAAAGATGGATGCTCTCGTTGCTGCTTGGTTGCCTGGTAGTGTTATCCTTGGAGATTATAACTTTGAGGGCAAGCTACGTGTGACATGGTTTAAAAGTGTTGAACAGCTCCCATTGGATGTCGGAAGCAACTCATATGACCCTTTTATATCCTCTTGGGTTTGGATTGACATGCGAAAGTTATACCACCAAACAGATTTTGAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

427

Amino Acids

47.41

Weight (kDa)

5.75

Isoelectric Point (pI)

28.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3	PF00933	9 - 149	1.8e-21	Glycosyl hydrolase family 3 N terminal domain
Glyco_hydro_3	PF00933	160 - 233	2e-07	Glycosyl hydrolase family 3 N terminal domain
Glyco_hydro_3_C	PF01915	317 - 404	1.1e-11	Glycosyl hydrolase family 3 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47000 AT3G47000 AT3G47000 AT3G47010 AT3G47010 AT3G47010 AT3G47040 AT3G47040 AT3G47040 AT3G47050
fragaria_vesca	FvH4_3g38160 FvH4_3g38160 FvH4_4g11940
malus_domestica	MD02G1242000.v1.1 MD02G1242100.v1.1 MD02G1242200.v1.1 MD02G1242300.v1.1 MD11G1080700.v1.1
prunus_persica	Prupe.2G092300_v2.0.a1 Prupe.2G092300_v2.0.a1 Prupe.2G092300_v2.0.a1 Prupe.2G092600_v2.0.a1 Prupe.2G092900_v2.0.a1 Prupe.2G092900_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1
pyrus_communis	pycom02g20900 pycom11g06800 pycom11g06860
rosa_chinensis	RchiOBHm_Chr5g0068591 RchiOBHm_Chr6g0246121
rosa_laevigata	RLG00000035983 RLG00000036820 RLG00000036839
rosa_multiflora	Rmu_sc0004721.1_g000003
rosa_roxburghii	Rroxscaffold_1G00003560 Rroxscaffold_1G00012260 Rroxscaffold_3G00247860 Rroxscaffold_7G00214870
rosa_rugosa	Rorug05G0391700 Rorug05G0464600 Rorug05G0465200 Rorug05G0465800
rosa_samantha	Rh5AG449400 Rh5BG467600 Rh5DG481000 Rh5DG551200 Rh5DG552100 Rh7AG258000 Rh7CG274700 Rh7DG265200
rosa_wichuraiana	Rw5G041960 Rw5G048090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	386, 1134
AccB1I	GGYRCC	1 cut(s)	98
AccIII	TCCGGA	1 cut(s)	42
AciI	CCGC	1 cut(s)	146
AclWI	GGATC	2 cut(s)	254, 777
AcsI	RAATTY	1 cut(s)	610
AdeI	CACNNNGTG	1 cut(s)	521
AfaI	GTAC	2 cut(s)	238, 442
AfiI	CCNNNNNNNGG	6 cut(s)	42, 269, 359, 946, 980, 1024
AflIII	ACRYGT	2 cut(s)	582, 1153
AgsI	TTSAA	6 cut(s)	55, 185, 608, 722, 811, 1178
AjnI	CCWGG	2 cut(s)	662, 1108
AleI	CACNNNNGTG	1 cut(s)	1025
AluBI	AGCT	7 cut(s)	231, 288, 785, 964, 999, 1150, 1183
AluI	AGCT	7 cut(s)	231, 288, 785, 964, 999, 1150, 1183
Alw26I	GTCTC	2 cut(s)	131, 1073
AlwI	GGATC	2 cut(s)	254, 777
AlwNI	CAGNNNCTG	1 cut(s)	1007
Ama87I	CYCGRG	1 cut(s)	128
Aor13HI	TCCGGA	1 cut(s)	42
ApeKI	GCWGC	3 cut(s)	288, 475, 1097
ApoI	RAATTY	1 cut(s)	610
Asp700I	GAANNNNTTC	1 cut(s)	786
AspS9I	GGNCC	1 cut(s)	983
AsuC2I	CCSGG	1 cut(s)	37
AsuHPI	GGTGA	2 cut(s)	179, 1039
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	983
BaeI	ACNNNNGTAYC	4 cut(s)	228, 261, 644, 677
BanI	GGYRCC	1 cut(s)	98
BbsI	GAAGAC	1 cut(s)	1051
BbvI	GCAGC	3 cut(s)	275, 462, 1084
BccI	CCATC	5 cut(s)	261, 428, 497, 809, 1075
BciT130I	CCWGG	2 cut(s)	664, 1110
BcnI	CCSGG	1 cut(s)	37
BcoDI	GTCTC	2 cut(s)	131, 1073
BfaI	CTAG	2 cut(s)	195, 1041
BfmI	CTRYAG	3 cut(s)	289, 476, 1056
BglII	AGATCT	1 cut(s)	740
BisI	GCNGC	3 cut(s)	289, 476, 1098
BlsI	GCNGC	3 cut(s)	290, 477, 1099
Bme1390I	CCNGG	3 cut(s)	37, 664, 1110
Bme18I	GGWCC	1 cut(s)	983
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	983
BmiI	GGNNCC	3 cut(s)	41, 100, 825
BmrFI	CCNGG	3 cut(s)	37, 664, 1110
BmsI	GCATC	5 cut(s)	58, 133, 266, 664, 1075
BpiI	GAAGAC	1 cut(s)	1051
BpuEI	CTTGAG	2 cut(s)	513, 946
BpuMI	CCSGG	1 cut(s)	37
BsaAI	YACGTR	1 cut(s)	1154
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	2 cut(s)	358, 1123
BsaWI	WCCGGW	2 cut(s)	42, 878
Bsc4I	CCNNNNNNNGG	6 cut(s)	42, 269, 359, 946, 980, 1024
Bse1I	ACTGG	1 cut(s)	876
BseAI	TCCGGA	1 cut(s)	42
BseBI	CCWGG	2 cut(s)	664, 1110
BseDI	CCNNGG	2 cut(s)	358, 1123
BseGI	GGATG	6 cut(s)	323, 508, 625, 820, 1090, 1198
BseLI	CCNNNNNNNGG	6 cut(s)	42, 269, 359, 946, 980, 1024
BseMII	CTCAG	5 cut(s)	348, 532, 683, 903, 1014
BseNI	ACTGG	1 cut(s)	876
BseXI	GCAGC	3 cut(s)	275, 462, 1084
BshNI	GGYRCC	1 cut(s)	98
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	3 cut(s)	37, 43, 879
BslFI	GGGAC	1 cut(s)	285
BslI	CCNNNNNNNGG	6 cut(s)	42, 269, 359, 946, 980, 1024
BsmAI	GTCTC	2 cut(s)	131, 1073
BsmFI	GGGAC	1 cut(s)	285
BsmI	GAATGC	2 cut(s)	201, 472
Bso31I	GGTCTC	1 cut(s)	131
BsoBI	CYCGRG	1 cut(s)	128
Bsp13I	TCCGGA	1 cut(s)	42
Bsp143I	GATC	4 cut(s)	259, 740, 769, 895
BspACI	CCGC	1 cut(s)	146
BspCNI	CTCAG	5 cut(s)	347, 531, 684, 904, 1013
BspEI	TCCGGA	1 cut(s)	42
BspLI	GGNNCC	3 cut(s)	41, 100, 825
BspMAI	CTGCAG	2 cut(s)	293, 480
BspPI	GGATC	2 cut(s)	254, 777
BspT107I	GGYRCC	1 cut(s)	98
BspTNI	GGTCTC	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	876
BssECI	CCNNGG	2 cut(s)	358, 1123
BssMI	GATC	4 cut(s)	259, 740, 769, 895
BssT1I	CCWWGG	2 cut(s)	358, 1123
Bst2UI	CCWGG	2 cut(s)	664, 1110
Bst4CI	ACNGT	1 cut(s)	1057
BstBAI	YACGTR	1 cut(s)	1154
BstC8I	GCNNGC	4 cut(s)	341, 778, 888, 1148
BstDEI	CTNAG	5 cut(s)	334, 518, 692, 912, 1000
BstEII	GGTNACC	2 cut(s)	374, 874
BstF5I	GGATG	6 cut(s)	323, 508, 625, 820, 1090, 1198
BstKTI	GATC	4 cut(s)	262, 743, 772, 898
BstMAI	GTCTC	2 cut(s)	131, 1073
BstMBI	GATC	4 cut(s)	259, 740, 769, 895
BstMWI	GCNNNNNNNGC	6 cut(s)	152, 285, 349, 569, 782, 1094
BstNI	CCWGG	2 cut(s)	664, 1110
BstNSI	RCATGY	5 cut(s)	414, 586, 780, 890, 1249
BstPI	GGTNACC	2 cut(s)	374, 874
BstSCI	CCNGG	3 cut(s)	35, 662, 1108
BstSFI	CTRYAG	3 cut(s)	289, 476, 1056
BstV1I	GCAGC	3 cut(s)	275, 462, 1084
BstV2I	GAAGAC	1 cut(s)	1051
BstX2I	RGATCY	3 cut(s)	259, 740, 769
BstYI	RGATCY	3 cut(s)	259, 740, 769
BtsCI	GGATG	6 cut(s)	323, 508, 625, 820, 1090, 1198
BtsI	GCAGTG	1 cut(s)	298
BtsIMutI	CAGTG	3 cut(s)	298, 526, 869
Cac8I	GCNNGC	4 cut(s)	341, 778, 888, 1148
CaiI	CAGNNNCTG	1 cut(s)	1007
Cfr13I	GGNCC	1 cut(s)	983
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	2 cut(s)	237, 441
CviAII	CATG	9 cut(s)	77, 365, 411, 583, 644, 777, 887, 1161, 1246
CviQI	GTAC	2 cut(s)	237, 441
DdeI	CTNAG	5 cut(s)	334, 518, 692, 912, 1000
DpnI	GATC	4 cut(s)	261, 742, 771, 897
DpnII	GATC	4 cut(s)	259, 740, 769, 895
DraI	TTTAAA	1 cut(s)	1168
DraIII	CACNNNGTG	1 cut(s)	521
Eco130I	CCWWGG	2 cut(s)	358, 1123
Eco31I	GGTCTC	1 cut(s)	131
Eco32I	GATATC	2 cut(s)	905, 1038
Eco47I	GGWCC	1 cut(s)	983
Eco88I	CYCGRG	1 cut(s)	128
Eco91I	GGTNACC	2 cut(s)	374, 874
EcoO65I	GGTNACC	2 cut(s)	374, 874
EcoRII	CCWGG	2 cut(s)	662, 1108
EcoRV	GATATC	2 cut(s)	905, 1038
EcoT14I	CCWWGG	2 cut(s)	358, 1123
ErhI	CCWWGG	2 cut(s)	358, 1123
FaeI	CATG	9 cut(s)	80, 368, 414, 586, 647, 780, 890, 1164, 1249
FalI	AAGNNNNNCTT	2 cut(s)	820, 852
FaqI	GGGAC	1 cut(s)	285
FatI	CATG	9 cut(s)	76, 364, 410, 582, 643, 776, 886, 1160, 1245
FauNDI	CATATG	1 cut(s)	1210
Fnu4HI	GCNGC	3 cut(s)	289, 476, 1098
FokI	GGATG	6 cut(s)	310, 515, 632, 827, 1097, 1205
Fsp4HI	GCNGC	3 cut(s)	289, 476, 1098
FspBI	CTAG	2 cut(s)	195, 1041
GluI	GCNGC	3 cut(s)	289, 476, 1098
HapII	CCGG	3 cut(s)	37, 43, 879
HgaI	GACGC	1 cut(s)	79
Hin1II	CATG	9 cut(s)	80, 368, 414, 586, 647, 780, 890, 1164, 1249
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HinfI	GANTC	4 cut(s)	46, 970, 1014, 1030
HpaII	CCGG	3 cut(s)	37, 43, 879
HphI	GGTGA	2 cut(s)	179, 1039
Hpy166II	GTNNAC	2 cut(s)	7, 443
Hpy188I	TCNGA	5 cut(s)	18, 602, 736, 1035, 1199
Hpy188III	TCNNGA	4 cut(s)	43, 182, 925, 1041
Hpy8I	GTNNAC	2 cut(s)	7, 443
HpyAV	CCTTC	1 cut(s)	805
HpyCH4III	ACNGT	1 cut(s)	1057
HpyCH4IV	ACGT	1 cut(s)	1153
HpyCH4V	TGCA	6 cut(s)	26, 255, 291, 343, 410, 478
HpyF10VI	GCNNNNNNNGC	6 cut(s)	152, 285, 349, 569, 782, 1094
HpyF3I	CTNAG	5 cut(s)	334, 518, 692, 912, 1000
HpySE526I	ACGT	1 cut(s)	1153
Hsp92II	CATG	9 cut(s)	80, 368, 414, 586, 647, 780, 890, 1164, 1249
Kpn2I	TCCGGA	1 cut(s)	42
Kzo9I	GATC	4 cut(s)	259, 740, 769, 895
LmnI	GCTCC	5 cut(s)	45, 224, 823, 961, 1188
Lsp1109I	GCAGC	3 cut(s)	275, 462, 1084
LweI	GCATC	5 cut(s)	58, 133, 266, 664, 1075
MaeI	CTAG	2 cut(s)	195, 1041
MaeII	ACGT	1 cut(s)	1153
MaeIII	GTNAC	3 cut(s)	374, 874, 1156
MalI	GATC	4 cut(s)	261, 742, 771, 897
MboI	GATC	4 cut(s)	259, 740, 769, 895
MboII	GAAGA	4 cut(s)	308, 405, 833, 1056
MflI	RGATCY	3 cut(s)	259, 740, 769
MluCI	AATT	4 cut(s)	306, 483, 576, 610
MmeI	TCCRAC	3 cut(s)	409, 897, 1177
MnlI	CCTC	7 cut(s)	12, 454, 537, 759, 921, 1135, 1237
MroI	TCCGGA	1 cut(s)	42
MroXI	GAANNNNTTC	1 cut(s)	786
MseI	TTAA	3 cut(s)	978, 1052, 1167
MslI	CAYNNNNRTG	3 cut(s)	369, 891, 1025
MspI	CCGG	3 cut(s)	37, 43, 879
MspR9I	CCNGG	3 cut(s)	37, 664, 1110
Mva1269I	GAATGC	2 cut(s)	201, 472
MvaI	CCWGG	2 cut(s)	664, 1110
MwoI	GCNNNNNNNGC	6 cut(s)	152, 285, 349, 569, 782, 1094
NciI	CCSGG	1 cut(s)	37
NdeI	CATATG	1 cut(s)	1210
NdeII	GATC	4 cut(s)	259, 740, 769, 895
NlaIII	CATG	9 cut(s)	80, 368, 414, 586, 647, 780, 890, 1164, 1249
NlaIV	GGNNCC	3 cut(s)	41, 100, 825
NmuCI	GTSAC	1 cut(s)	1156
NspI	RCATGY	5 cut(s)	414, 586, 780, 890, 1249
OliI	CACNNNNGTG	1 cut(s)	1025
PaeI	GCATGC	2 cut(s)	780, 890
PciI	ACATGT	1 cut(s)	582
PctI	GAATGC	2 cut(s)	201, 472
PdmI	GAANNNNTTC	1 cut(s)	786
PfeI	GAWTC	4 cut(s)	46, 970, 1014, 1030
PfoI	TCCNGGA	1 cut(s)	662
PkrI	GCNGC	3 cut(s)	290, 477, 1099
Ppu21I	YACGTR	1 cut(s)	1154
PscI	ACATGT	1 cut(s)	582
PsiI	TTATAA	2 cut(s)	386, 1134
Psp6I	CCWGG	2 cut(s)	662, 1108
PspEI	GGTNACC	2 cut(s)	374, 874
PspGI	CCWGG	2 cut(s)	662, 1108
PspN4I	GGNNCC	3 cut(s)	41, 100, 825
PspPI	GGNCC	1 cut(s)	983
PsrI	GAACNNNNNNTAC	2 cut(s)	859, 891
PstI	CTGCAG	2 cut(s)	293, 480
PstNI	CAGNNNCTG	1 cut(s)	1007
PsuI	RGATCY	3 cut(s)	259, 740, 769
RsaI	GTAC	2 cut(s)	238, 442
RsaNI	GTAC	2 cut(s)	237, 441
RseI	CAYNNNNRTG	3 cut(s)	369, 891, 1025
SaqAI	TTAA	3 cut(s)	978, 1052, 1167
SatI	GCNGC	3 cut(s)	289, 476, 1098
Sau3AI	GATC	4 cut(s)	259, 740, 769, 895
Sau96I	GGNCC	1 cut(s)	983
ScrFI	CCNGG	3 cut(s)	37, 664, 1110
SfaNI	GCATC	5 cut(s)	58, 133, 266, 664, 1075
SfcI	CTRYAG	3 cut(s)	289, 476, 1056
SinI	GGWCC	1 cut(s)	983
SmiMI	CAYNNNNRTG	3 cut(s)	369, 891, 1025
SmlI	CTYRAG	2 cut(s)	528, 925
SmoI	CTYRAG	2 cut(s)	528, 925
SphI	GCATGC	2 cut(s)	780, 890
Sse9I	AATT	4 cut(s)	306, 483, 576, 610
SsiI	CCGC	1 cut(s)	146
SspMI	CTAG	2 cut(s)	195, 1041
StyD4I	CCNGG	3 cut(s)	35, 662, 1108
StyI	CCWWGG	2 cut(s)	358, 1123
TaaI	ACNGT	1 cut(s)	1057
TaiI	ACGT	1 cut(s)	1156
TaqI	TCGA	1 cut(s)	510
TasI	AATT	4 cut(s)	306, 483, 576, 610
TfiI	GAWTC	4 cut(s)	46, 970, 1014, 1030
Tru1I	TTAA	3 cut(s)	978, 1052, 1167
Tru9I	TTAA	3 cut(s)	978, 1052, 1167
TscAI	CASTG	3 cut(s)	298, 526, 876
TseFI	GTSAC	1 cut(s)	1156
TseI	GCWGC	3 cut(s)	288, 475, 1097
Tsp45I	GTSAC	1 cut(s)	1156
TspDTI	ATGAA	2 cut(s)	65, 381
TspRI	CASTG	3 cut(s)	298, 526, 876
VpaK11BI	GGWCC	1 cut(s)	983
XapI	RAATTY	1 cut(s)	610
XbaI	TCTAGA	1 cut(s)	1040
XceI	RCATGY	5 cut(s)	414, 586, 780, 890, 1249
XcmI	CCANNNNNNNNNTGG	1 cut(s)	868
XmnI	GAANNNNTTC	1 cut(s)	786
XspI	CTAG	2 cut(s)	195, 1041

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.