Rh7AG258000

Belongs to the glycosyl hydrolase 3 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Reverse (-)
26227819 .. 26231305
3487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG258000.1

Sequence Viewer

Length: 1461 bp
ATGGAAACAACTGAGGACTTAAATTGCATATACAGAAACCCAAATGAACCCCTTGAAGCTCGAGTCAAGGACCTCGTTTCTCTCATGACTCTGAAGGAAAAGGTGGGGCAGATGACCCAGATAGAGCGTCAGGTCGCTACCCCTTCTGCCATTAAAGACTTCTCAATCGAGATCGATGCGGATTTGGCTGAAAGGATTGGTGAGGCAAGTCAGGCAACTGCTCTTGAAGTCAGGGTTAGTGGCATTCACTACACTTTTGCTCCCTGTGTAGCTAGTTACAGCGAAGAAACTGAAATTGTTAGCAAGATGACATCCATTATCTCAGGCTTGCAGGGGAAGCCACCCCAAGGGCATGAAAATGGTTACCCTTTTATAATGGGAAGAAACAACAACACTATTGCATGTGCCGATGGGGGTACACAGGAAGGTGTAAATGATGGAAATACCATATCATCTTACGATGACTTAGAGAGGATTCATATGGCACCTTATCTGGACTGCATTTCTCAAGGAGTTTCCACTATTATGGCATCTTATTCCAGCTGGAATGGAAATAGACTACATGCTGATCGTCTTCTCCTGACTGAAATCTTGAAAGAAAAGCTAGGATTTAAGGGAATTGTGCTTTCTGACTGGGATGGTATTGAAACACTCAGTGAGCCTCAAGGGTCAAACTATCATTTCTGCATTTTATCTGCTGTCAATGCTGGAATTGACATGATCTTTGCTGGACAAAGTTGGTATAAGCTGCATAGGGATCTGGCACGCGAAGCTGTTCGCAAGTCATTGGTTCTGTTGAAGAATGGAAAGGAGCCAAGCAAACCTTTTCTTCCATTAGATAGAAAAGCCAAAAGAACACTGGTTACCGGAACGCATGCTGATGATCTTGGATATCAGTGTGGAGGATGGACAGCTACTAAGGCTGGTTTAAGTGGCAGGTTCACCATTGGCACAACCATCTTGGAAGCTATCAAGAAGGCAGTTGGAGAGGAAACAGAAATTATTTATGAGCAACTGCCATCAACGGATACCCTAGCACGTAAAGATATATCGTTTGCAGTTGTTGCTGTTGGTGAAGGTTCATATGCCGAATGCAAGGGCAACAACTTGGAGCTTGTGGTTCCTTTTAATGGACCTGATGTAATAAGCTCAGTTGCTGACAGAATCCCCACATTGGTGATTCTGATATCTAGAAGACCCTTAACTGTAGAGCCAAGTCTCTTGGAAAAGATGCATGTTCTCGTTGCTGCTTGGTTGCCTGGTAGTGAAGGAGAGGGAATTGCAGATGTTATCTTTGGAGATTATAACTTTGAGGGCAAGCTACGTGTGACATGGTTTAAAAGTGTTGAACAGCTCCCATTGGATGTCGGAAGCAACTCATATGACCCTTTATATCCTCTTGGGTTTGGATTGACATGCGATACAGAGAAAGTTATACACCAAACAGATTTTGAGAAATGA

Protein Analysis

486

Amino Acids

53.29

Weight (kDa)

4.97

Isoelectric Point (pI)

33.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_3 PF00933 28 - 256 3.1e-26 Glycosyl hydrolase family 3 N terminal domain
Glyco_hydro_3_C PF01915 263 - 472 1.3e-33 Glycosyl hydrolase family 3 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 374, 1305
Acc36I ACCTGC 1 cut(s) 927
AccB1I GGYRCC 1 cut(s) 484
AccII CGCG 1 cut(s) 768
AciI CCGC 1 cut(s) 179
AclWI GGATC 1 cut(s) 765
AcuI CTGAAG 1 cut(s) 113
AdeI CACNNNGTG 1 cut(s) 656
AfaI GTAC 1 cut(s) 418
AfiI CCNNNNNNNGG 3 cut(s) 347, 1130, 1174
AflIII ACRYGT 1 cut(s) 1324
AgsI TTSAA 6 cut(s) 56, 227, 595, 647, 799, 1349
AjnI CCWGG 1 cut(s) 1258
AleI CACNNNNGTG 1 cut(s) 1175
Alw26I GTCTC 1 cut(s) 1223
AlwI GGATC 1 cut(s) 765
AlwNI CAGNNNCTG 1 cut(s) 1157
Ama87I CYCGRG 1 cut(s) 60
ApeKI GCWGC 2 cut(s) 748, 1247
ArsI GACNNNNNNTTYG 2 cut(s) 707, 739
Asp700I GAANNNNTTC 1 cut(s) 774
AspS9I GGNCC 2 cut(s) 70, 1133
AsuHPI GGTGA 4 cut(s) 212, 934, 1085, 1189
AvaI CYCGRG 1 cut(s) 60
AvaII GGWCC 2 cut(s) 70, 1133
BanI GGYRCC 1 cut(s) 484
BbsI GAAGAC 2 cut(s) 566, 1201
BbvI GCAGC 2 cut(s) 735, 1234
BccI CCATC 6 cut(s) 404, 431, 632, 900, 965, 1027
BcgI CGANNNNNNTGC 2 cut(s) 158, 192
BciT130I CCWGG 1 cut(s) 1260
BciVI GTATCC 1 cut(s) 1021
BcoDI GTCTC 1 cut(s) 1223
BfaI CTAG 4 cut(s) 273, 605, 1034, 1191
BfmI CTRYAG 1 cut(s) 1206
BfuAI ACCTGC 1 cut(s) 927
BfuI GTATCC 1 cut(s) 1021
BisI GCNGC 2 cut(s) 749, 1248
BlsI GCNGC 2 cut(s) 750, 1249
Bme1390I CCNGG 1 cut(s) 1260
Bme18I GGWCC 2 cut(s) 70, 1133
BmeT110I CYCGRG 1 cut(s) 60
BmgT120I GGNCC 2 cut(s) 70, 1133
BmiI GGNNCC 3 cut(s) 486, 813, 1122
BmrFI CCNGG 1 cut(s) 1260
BmrI ACTGGG 1 cut(s) 643
BmsI GCATC 3 cut(s) 166, 539, 1221
BmuI ACTGGG 1 cut(s) 643
BpiI GAAGAC 2 cut(s) 566, 1201
BpuEI CTTGAG 2 cut(s) 492, 648
Bsa29I ATCGAT 1 cut(s) 174
BsaAI YACGTR 2 cut(s) 1040, 1325
BsaJI CCNNGG 1 cut(s) 346
BsaWI WCCGGW 1 cut(s) 866
BsaXI ACNNNNNCTCC 2 cut(s) 244, 274
Bsc4I CCNNNNNNNGG 3 cut(s) 347, 1130, 1174
Bse1I ACTGG 2 cut(s) 638, 864
BseBI CCWGG 1 cut(s) 1260
BseCI ATCGAT 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 346
BseGI GGATG 4 cut(s) 311, 643, 911, 1369
BseLI CCNNNNNNNGG 3 cut(s) 347, 1130, 1174
BseMII CTCAG 3 cut(s) 336, 667, 1164
BseNI ACTGG 2 cut(s) 638, 864
BseXI GCAGC 2 cut(s) 735, 1234
Bsh1236I CGCG 1 cut(s) 768
BshNI GGYRCC 1 cut(s) 484
BshVI ATCGAT 1 cut(s) 174
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 1 cut(s) 867
BslI CCNNNNNNNGG 3 cut(s) 347, 1130, 1174
BsmAI GTCTC 1 cut(s) 1223
BsmI GAATGC 2 cut(s) 243, 1097
BsoBI CYCGRG 1 cut(s) 60
Bsp143I GATC 5 cut(s) 171, 568, 720, 757, 883
BspACI CCGC 1 cut(s) 179
BspCNI CTCAG 4 cut(s) 4, 335, 666, 1163
BspDI ATCGAT 1 cut(s) 174
BspFNI CGCG 1 cut(s) 768
BspHI TCATGA 1 cut(s) 84
BspLI GGNNCC 3 cut(s) 486, 813, 1122
BspMI ACCTGC 1 cut(s) 927
BspPI GGATC 1 cut(s) 765
BspT107I GGYRCC 1 cut(s) 484
BsrI ACTGG 2 cut(s) 638, 864
BssECI CCNNGG 1 cut(s) 346
BssMI GATC 5 cut(s) 171, 568, 720, 757, 883
BssT1I CCWWGG 1 cut(s) 346
Bst2UI CCWGG 1 cut(s) 1260
Bst4CI ACNGT 1 cut(s) 1207
BstAPI GCANNNNNTGC 1 cut(s) 1064
BstBAI YACGTR 2 cut(s) 1040, 1325
BstC8I GCNNGC 4 cut(s) 329, 766, 876, 1319
BstDEI CTNAG 6 cut(s) 12, 322, 466, 653, 918, 1150
BstEII GGTNACC 2 cut(s) 362, 862
BstF5I GGATG 4 cut(s) 311, 643, 911, 1369
BstFNI CGCG 1 cut(s) 768
BstKTI GATC 5 cut(s) 174, 571, 723, 760, 886
BstMAI GTCTC 1 cut(s) 1223
BstMBI GATC 5 cut(s) 171, 568, 720, 757, 883
BstMWI GCNNNNNNNGC 7 cut(s) 185, 212, 337, 704, 770, 920, 1064
BstNI CCWGG 1 cut(s) 1260
BstNSI RCATGY 5 cut(s) 405, 566, 878, 1238, 1419
BstPI GGTNACC 2 cut(s) 362, 862
BstSCI CCNGG 1 cut(s) 1258
BstSFI CTRYAG 1 cut(s) 1206
BstUI CGCG 1 cut(s) 768
BstV1I GCAGC 2 cut(s) 735, 1234
BstV2I GAAGAC 2 cut(s) 566, 1201
BstX2I RGATCY 1 cut(s) 757
BstXI CCANNNNNNTGG 1 cut(s) 526
BstYI RGATCY 1 cut(s) 757
Bsu15I ATCGAT 1 cut(s) 174
BsuI GTATCC 1 cut(s) 1021
BsuTUI ATCGAT 1 cut(s) 174
BtsCI GGATG 4 cut(s) 311, 643, 911, 1369
BtsIMutI CAGTG 3 cut(s) 661, 857, 902
BveI ACCTGC 1 cut(s) 927
Cac8I GCNNGC 4 cut(s) 329, 766, 876, 1319
CaiI CAGNNNCTG 1 cut(s) 1157
CciI TCATGA 1 cut(s) 84
Cfr13I GGNCC 2 cut(s) 70, 1133
ClaI ATCGAT 1 cut(s) 174
CseI GACGC 1 cut(s) 116
Csp6I GTAC 1 cut(s) 417
CviAII CATG 9 cut(s) 85, 353, 402, 563, 718, 875, 1235, 1332, 1416
CviQI GTAC 1 cut(s) 417
DdeI CTNAG 6 cut(s) 12, 322, 466, 653, 918, 1150
DpnI GATC 5 cut(s) 173, 570, 722, 759, 885
DpnII GATC 5 cut(s) 171, 568, 720, 757, 883
DraI TTTAAA 1 cut(s) 1339
DraIII CACNNNGTG 1 cut(s) 656
Eco130I CCWWGG 1 cut(s) 346
Eco32I GATATC 2 cut(s) 893, 1188
Eco47I GGWCC 2 cut(s) 70, 1133
Eco57I CTGAAG 1 cut(s) 113
Eco88I CYCGRG 1 cut(s) 60
Eco91I GGTNACC 2 cut(s) 362, 862
EcoO109I RGGNCCY 1 cut(s) 70
EcoO65I GGTNACC 2 cut(s) 362, 862
EcoRII CCWGG 1 cut(s) 1258
EcoRV GATATC 2 cut(s) 893, 1188
EcoT14I CCWWGG 1 cut(s) 346
EcoT22I ATGCAT 1 cut(s) 1236
ErhI CCWWGG 1 cut(s) 346
FaeI CATG 9 cut(s) 88, 356, 405, 566, 721, 878, 1238, 1335, 1419
FalI AAGNNNNNCTT 2 cut(s) 808, 840
FatI CATG 9 cut(s) 84, 352, 401, 562, 717, 874, 1234, 1331, 1415
FauNDI CATATG 3 cut(s) 480, 1084, 1381
Fnu4HI GCNGC 2 cut(s) 749, 1248
FokI GGATG 4 cut(s) 298, 650, 918, 1376
Fsp4HI GCNGC 2 cut(s) 749, 1248
FspBI CTAG 4 cut(s) 273, 605, 1034, 1191
GluI GCNGC 2 cut(s) 749, 1248
HapII CCGG 1 cut(s) 867
HgaI GACGC 1 cut(s) 116
Hin1II CATG 9 cut(s) 88, 356, 405, 566, 721, 878, 1238, 1335, 1419
HinfI GANTC 5 cut(s) 63, 88, 475, 1164, 1180
HpaII CCGG 1 cut(s) 867
HphI GGTGA 4 cut(s) 212, 934, 1085, 1189
Hpy166II GTNNAC 2 cut(s) 419, 942
Hpy188I TCNGA 4 cut(s) 93, 631, 1185, 1370
Hpy188III TCNNGA 8 cut(s) 85, 169, 224, 494, 580, 592, 973, 1191
Hpy8I GTNNAC 2 cut(s) 419, 942
HpyAV CCTTC 6 cut(s) 88, 153, 419, 970, 1070, 1262
HpyCH4III ACNGT 1 cut(s) 1207
HpyCH4IV ACGT 2 cut(s) 1039, 1324
HpyF10VI GCNNNNNNNGC 7 cut(s) 185, 212, 337, 704, 770, 920, 1064
HpyF3I CTNAG 6 cut(s) 12, 322, 466, 653, 918, 1150
HpySE526I ACGT 2 cut(s) 1039, 1324
Hsp92II CATG 9 cut(s) 88, 356, 405, 566, 721, 878, 1238, 1335, 1419
Kzo9I GATC 5 cut(s) 171, 568, 720, 757, 883
LmnI GCTCC 4 cut(s) 265, 811, 1111, 1359
Lsp1109I GCAGC 2 cut(s) 735, 1234
LweI GCATC 3 cut(s) 166, 539, 1221
MaeI CTAG 4 cut(s) 273, 605, 1034, 1191
MaeII ACGT 2 cut(s) 1039, 1324
MaeIII GTNAC 4 cut(s) 275, 362, 862, 1327
MalI GATC 5 cut(s) 173, 570, 722, 759, 885
MboI GATC 5 cut(s) 171, 568, 720, 757, 883
MboII GAAGA 6 cut(s) 296, 393, 566, 811, 821, 1206
MflI RGATCY 1 cut(s) 757
MluCI AATT 6 cut(s) 22, 294, 618, 711, 999, 1278
MlyI GAGTC 2 cut(s) 72, 82
MmeI TCCRAC 2 cut(s) 964, 1348
Mph1103I ATGCAT 1 cut(s) 1236
MroXI GAANNNNTTC 1 cut(s) 774
MseI TTAA 7 cut(s) 20, 153, 612, 929, 1128, 1202, 1338
MslI CAYNNNNRTG 4 cut(s) 357, 524, 879, 1175
MspA1I CMGCKG 1 cut(s) 543
MspI CCGG 1 cut(s) 867
MspR9I CCNGG 1 cut(s) 1260
Mva1269I GAATGC 2 cut(s) 243, 1097
MvaI CCWGG 1 cut(s) 1260
MvnI CGCG 1 cut(s) 768
MwoI GCNNNNNNNGC 7 cut(s) 185, 212, 337, 704, 770, 920, 1064
NdeI CATATG 3 cut(s) 480, 1084, 1381
NdeII GATC 5 cut(s) 171, 568, 720, 757, 883
NlaIII CATG 9 cut(s) 88, 356, 405, 566, 721, 878, 1238, 1335, 1419
NlaIV GGNNCC 3 cut(s) 486, 813, 1122
NmuCI GTSAC 1 cut(s) 1327
NsiI ATGCAT 1 cut(s) 1236
NspI RCATGY 5 cut(s) 405, 566, 878, 1238, 1419
OliI CACNNNNGTG 1 cut(s) 1175
PaeI GCATGC 1 cut(s) 878
PaeR7I CTCGAG 1 cut(s) 60
PagI TCATGA 1 cut(s) 84
PctI GAATGC 2 cut(s) 243, 1097
PdmI GAANNNNTTC 1 cut(s) 774
PfeI GAWTC 3 cut(s) 475, 1164, 1180
PkrI GCNGC 2 cut(s) 750, 1249
PleI GAGTC 2 cut(s) 71, 82
PpsI GAGTC 2 cut(s) 71, 82
Ppu21I YACGTR 2 cut(s) 1040, 1325
PpuMI RGGWCCY 1 cut(s) 70
PsiI TTATAA 2 cut(s) 374, 1305
Psp5II RGGWCCY 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 1258
PspEI GGTNACC 2 cut(s) 362, 862
PspGI CCWGG 1 cut(s) 1258
PspN4I GGNNCC 3 cut(s) 486, 813, 1122
PspPI GGNCC 2 cut(s) 70, 1133
PspPPI RGGWCCY 1 cut(s) 70
PspXI VCTCGAGB 1 cut(s) 60
PsrI GAACNNNNNNTAC 2 cut(s) 847, 879
PstNI CAGNNNCTG 1 cut(s) 1157
PsuI RGATCY 1 cut(s) 757
PvuII CAGCTG 1 cut(s) 543
RsaI GTAC 1 cut(s) 418
RsaNI GTAC 1 cut(s) 417
RseI CAYNNNNRTG 4 cut(s) 357, 524, 879, 1175
SaqAI TTAA 7 cut(s) 20, 153, 612, 929, 1128, 1202, 1338
SatI GCNGC 2 cut(s) 749, 1248
Sau3AI GATC 5 cut(s) 171, 568, 720, 757, 883
Sau96I GGNCC 2 cut(s) 70, 1133
SchI GAGTC 2 cut(s) 72, 82
ScrFI CCNGG 1 cut(s) 1260
SfaNI GCATC 3 cut(s) 166, 539, 1221
SfcI CTRYAG 1 cut(s) 1206
Sfr274I CTCGAG 1 cut(s) 60
SinI GGWCC 2 cut(s) 70, 1133
SlaI CTCGAG 1 cut(s) 60
SmiMI CAYNNNNRTG 4 cut(s) 357, 524, 879, 1175
SmlI CTYRAG 3 cut(s) 60, 507, 663
SmoI CTYRAG 3 cut(s) 60, 507, 663
SphI GCATGC 1 cut(s) 878
Sse9I AATT 6 cut(s) 22, 294, 618, 711, 999, 1278
SsiI CCGC 1 cut(s) 179
SspMI CTAG 4 cut(s) 273, 605, 1034, 1191
StyD4I CCNGG 1 cut(s) 1258
StyI CCWWGG 1 cut(s) 346
TaaI ACNGT 1 cut(s) 1207
TaiI ACGT 2 cut(s) 1042, 1327
TaqI TCGA 3 cut(s) 61, 168, 174
TasI AATT 6 cut(s) 22, 294, 618, 711, 999, 1278
TfiI GAWTC 3 cut(s) 475, 1164, 1180
Tru1I TTAA 7 cut(s) 20, 153, 612, 929, 1128, 1202, 1338
Tru9I TTAA 7 cut(s) 20, 153, 612, 929, 1128, 1202, 1338
TscAI CASTG 3 cut(s) 661, 864, 902
TseFI GTSAC 1 cut(s) 1327
TseI GCWGC 2 cut(s) 748, 1247
Tsp45I GTSAC 1 cut(s) 1327
TspDTI ATGAA 4 cut(s) 60, 369, 467, 1071
TspGWI ACGGA 1 cut(s) 1040
TspRI CASTG 3 cut(s) 661, 864, 902
VpaK11BI GGWCC 2 cut(s) 70, 1133
XbaI TCTAGA 1 cut(s) 1190
XceI RCATGY 5 cut(s) 405, 566, 878, 1238, 1419
XcmI CCANNNNNNNNNTGG 1 cut(s) 856
XhoI CTCGAG 1 cut(s) 60
XmnI GAANNNNTTC 1 cut(s) 774
XspI CTAG 4 cut(s) 273, 605, 1034, 1191
Zsp2I ATGCAT 1 cut(s) 1236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.