Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001232

Physical Location & Seq

Genomic Coordinates Reverse (-)

27516270 .. 27518615

Gene Structure 2346 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG274700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGACATCCATTATCTCAGGCTTGCAGGGGAAGCCACCCCAAGGGCATGAAAATGGTTACCCTTTTATAATGGGAAGAAACAACAACACTATTGCATGTGCCGATGGGGGTACACAGGAAGGTGTAAATGATGGAAATACCATATCATCTTACGATGACTTAGAGAGGATTCATATGGCACCTTATCTGGACTGCATTTCTCAAGGAGTTTCCACTATTATGGCATCTTATTCCAGCTGGAATGGAAATAGACTACATGCTGATCGTCTTCTCCTGACTGAAATCTTGAAAGAAAAGCTAGGATTTAAGTGTGGAGGATGGACAGCTACTAAGGCTGGTTTAAGTGGCAGGTTCACCATTGGCACAACCATCTTGGAAGCTATCAAGAAGGCAGTTGGAGAGGAAACAGAAATTATTTATGAGCAACTGCCATCAACGGATACCCTAGCACGTAAAGATATATCGTTTGCAGTTGTTGCTGTTGGTGAAGGTTCATATGCCGAATGCAAGGGCAACAACTTGGAGCTTGTGGTTCCTTTTAATGGACCTGATGTAATAAGCTCAGTTGCTGACAGAATCCCCACATTGGTGATTCTGATATCTAGAAGACCCTTAACTGTAGAGCCAAGTCTCTTGGAAAAGATGCATGTTCTCGTTGCTGCTTGGTTGCCTGGTAGTGAAGGAGAGGGAATTGCAGATGTTATCTTTGGAGATTATAACTTTGAGGGCAAGCTACGTGTGACATGGTTTAAAAGTGTTGAACAGCTCCCATTGGATGTCGGAAGCAACTCATATGACCCTTTATATCCTCTTGGGTTTGGATTGACATGCGATACAGAGAAAGTTATACACCAAACAGATTTTGAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

290

Amino Acids

31.52

Weight (kDa)

4.84

Isoelectric Point (pI)

33.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3	PF00933	35 - 103	1.2e-11	Glycosyl hydrolase family 3 N terminal domain
Glyco_hydro_3_C	PF01915	104 - 276	2.1e-25	Glycosyl hydrolase family 3 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47000 AT3G47000 AT3G47000 AT3G47010 AT3G47010 AT3G47010 AT3G47040 AT3G47040 AT3G47040 AT3G47050
fragaria_vesca	FvH4_3g38160 FvH4_3g38160 FvH4_4g11940
malus_domestica	MD02G1242000.v1.1 MD02G1242100.v1.1 MD02G1242200.v1.1 MD02G1242300.v1.1 MD11G1080700.v1.1
prunus_persica	Prupe.2G092300_v2.0.a1 Prupe.2G092300_v2.0.a1 Prupe.2G092300_v2.0.a1 Prupe.2G092600_v2.0.a1 Prupe.2G092900_v2.0.a1 Prupe.2G092900_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1
pyrus_communis	pycom02g20900 pycom11g06800 pycom11g06860
rosa_chinensis	RchiOBHm_Chr5g0068591 RchiOBHm_Chr6g0246121
rosa_laevigata	RLG00000035983 RLG00000036820 RLG00000036839
rosa_multiflora	Rmu_sc0004721.1_g000003
rosa_roxburghii	Rroxscaffold_1G00003560 Rroxscaffold_1G00012260 Rroxscaffold_3G00247860 Rroxscaffold_7G00214870
rosa_rugosa	Rorug05G0391700 Rorug05G0464600 Rorug05G0465200 Rorug05G0465800
rosa_samantha	Rh5AG449400 Rh5BG467600 Rh5DG481000 Rh5DG551200 Rh5DG552100 Rh7AG258000 Rh7CG274700 Rh7DG265200
rosa_wichuraiana	Rw5G041960 Rw5G048090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	68, 717
Acc36I	ACCTGC	1 cut(s)	339
AccB1I	GGYRCC	1 cut(s)	178
AfaI	GTAC	1 cut(s)	112
AfiI	CCNNNNNNNGG	3 cut(s)	41, 542, 586
AflIII	ACRYGT	1 cut(s)	736
AgsI	TTSAA	2 cut(s)	289, 761
AjnI	CCWGG	1 cut(s)	670
AleI	CACNNNNGTG	1 cut(s)	587
AluBI	AGCT	8 cut(s)	237, 298, 326, 380, 526, 561, 733, 766
AluI	AGCT	8 cut(s)	237, 298, 326, 380, 526, 561, 733, 766
Alw26I	GTCTC	1 cut(s)	635
AlwNI	CAGNNNCTG	1 cut(s)	569
ApeKI	GCWGC	1 cut(s)	659
AspS9I	GGNCC	1 cut(s)	545
AsuHPI	GGTGA	3 cut(s)	346, 497, 601
AvaII	GGWCC	1 cut(s)	545
BanI	GGYRCC	1 cut(s)	178
BbsI	GAAGAC	2 cut(s)	260, 613
BbvI	GCAGC	1 cut(s)	646
BccI	CCATC	5 cut(s)	98, 125, 312, 377, 439
BciT130I	CCWGG	1 cut(s)	672
BciVI	GTATCC	1 cut(s)	433
BcoDI	GTCTC	1 cut(s)	635
BfaI	CTAG	3 cut(s)	299, 446, 603
BfmI	CTRYAG	1 cut(s)	618
BfuAI	ACCTGC	1 cut(s)	339
BfuI	GTATCC	1 cut(s)	433
BisI	GCNGC	1 cut(s)	660
BlsI	GCNGC	1 cut(s)	661
Bme1390I	CCNGG	1 cut(s)	672
Bme18I	GGWCC	1 cut(s)	545
BmgT120I	GGNCC	1 cut(s)	545
BmiI	GGNNCC	2 cut(s)	180, 534
BmrFI	CCNGG	1 cut(s)	672
BmsI	GCATC	2 cut(s)	233, 633
BpiI	GAAGAC	2 cut(s)	260, 613
BpuEI	CTTGAG	1 cut(s)	186
BsaAI	YACGTR	2 cut(s)	452, 737
BsaJI	CCNNGG	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 542, 586
BseBI	CCWGG	1 cut(s)	672
BseDI	CCNNGG	1 cut(s)	40
BseGI	GGATG	3 cut(s)	5, 323, 781
BseLI	CCNNNNNNNGG	3 cut(s)	41, 542, 586
BseMII	CTCAG	2 cut(s)	30, 576
BseXI	GCAGC	1 cut(s)	646
BshNI	GGYRCC	1 cut(s)	178
BslI	CCNNNNNNNGG	3 cut(s)	41, 542, 586
BsmAI	GTCTC	1 cut(s)	635
BsmI	GAATGC	1 cut(s)	509
Bsp143I	GATC	1 cut(s)	262
BspCNI	CTCAG	2 cut(s)	29, 575
BspLI	GGNNCC	2 cut(s)	180, 534
BspMI	ACCTGC	1 cut(s)	339
BspT107I	GGYRCC	1 cut(s)	178
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	1 cut(s)	262
BssT1I	CCWWGG	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	672
Bst4CI	ACNGT	1 cut(s)	619
BstAPI	GCANNNNNTGC	1 cut(s)	476
BstBAI	YACGTR	2 cut(s)	452, 737
BstC8I	GCNNGC	2 cut(s)	23, 731
BstDEI	CTNAG	4 cut(s)	16, 160, 330, 562
BstEII	GGTNACC	1 cut(s)	56
BstF5I	GGATG	3 cut(s)	5, 323, 781
BstKTI	GATC	1 cut(s)	265
BstMAI	GTCTC	1 cut(s)	635
BstMBI	GATC	1 cut(s)	262
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 332, 476
BstNI	CCWGG	1 cut(s)	672
BstNSI	RCATGY	4 cut(s)	99, 260, 650, 831
BstPI	GGTNACC	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	670
BstSFI	CTRYAG	1 cut(s)	618
BstV1I	GCAGC	1 cut(s)	646
BstV2I	GAAGAC	2 cut(s)	260, 613
BstXI	CCANNNNNNTGG	1 cut(s)	220
BsuI	GTATCC	1 cut(s)	433
BtsCI	GGATG	3 cut(s)	5, 323, 781
BveI	ACCTGC	1 cut(s)	339
Cac8I	GCNNGC	2 cut(s)	23, 731
CaiI	CAGNNNCTG	1 cut(s)	569
Cfr13I	GGNCC	1 cut(s)	545
Csp6I	GTAC	1 cut(s)	111
CviAII	CATG	6 cut(s)	47, 96, 257, 647, 744, 828
CviQI	GTAC	1 cut(s)	111
DdeI	CTNAG	4 cut(s)	16, 160, 330, 562
DpnI	GATC	1 cut(s)	264
DpnII	GATC	1 cut(s)	262
DraI	TTTAAA	1 cut(s)	751
Eco130I	CCWWGG	1 cut(s)	40
Eco32I	GATATC	1 cut(s)	600
Eco47I	GGWCC	1 cut(s)	545
Eco91I	GGTNACC	1 cut(s)	56
EcoO65I	GGTNACC	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	670
EcoRV	GATATC	1 cut(s)	600
EcoT14I	CCWWGG	1 cut(s)	40
EcoT22I	ATGCAT	1 cut(s)	648
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	6 cut(s)	50, 99, 260, 650, 747, 831
FatI	CATG	6 cut(s)	46, 95, 256, 646, 743, 827
FauNDI	CATATG	3 cut(s)	174, 496, 793
Fnu4HI	GCNGC	1 cut(s)	660
FokI	GGATG	2 cut(s)	330, 788
Fsp4HI	GCNGC	1 cut(s)	660
FspBI	CTAG	3 cut(s)	299, 446, 603
GluI	GCNGC	1 cut(s)	660
Hin1II	CATG	6 cut(s)	50, 99, 260, 650, 747, 831
HinfI	GANTC	3 cut(s)	169, 576, 592
HphI	GGTGA	3 cut(s)	346, 497, 601
Hpy166II	GTNNAC	2 cut(s)	113, 354
Hpy188I	TCNGA	2 cut(s)	597, 782
Hpy188III	TCNNGA	5 cut(s)	188, 274, 286, 385, 603
Hpy8I	GTNNAC	2 cut(s)	113, 354
HpyAV	CCTTC	4 cut(s)	113, 382, 482, 674
HpyCH4III	ACNGT	1 cut(s)	619
HpyCH4IV	ACGT	2 cut(s)	451, 736
HpyCH4V	TGCA	7 cut(s)	25, 95, 195, 470, 507, 646, 695
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 332, 476
HpyF3I	CTNAG	4 cut(s)	16, 160, 330, 562
HpySE526I	ACGT	2 cut(s)	451, 736
Hsp92II	CATG	6 cut(s)	50, 99, 260, 650, 747, 831
Kzo9I	GATC	1 cut(s)	262
LmnI	GCTCC	2 cut(s)	523, 771
Lsp1109I	GCAGC	1 cut(s)	646
LweI	GCATC	2 cut(s)	233, 633
MaeI	CTAG	3 cut(s)	299, 446, 603
MaeII	ACGT	2 cut(s)	451, 736
MaeIII	GTNAC	2 cut(s)	56, 739
MalI	GATC	1 cut(s)	264
MboI	GATC	1 cut(s)	262
MboII	GAAGA	3 cut(s)	87, 260, 618
MluCI	AATT	2 cut(s)	411, 690
MmeI	TCCRAC	2 cut(s)	376, 760
MnlI	CCTC	6 cut(s)	159, 308, 394, 679, 718, 819
Mph1103I	ATGCAT	1 cut(s)	648
MseI	TTAA	5 cut(s)	306, 341, 540, 614, 750
MslI	CAYNNNNRTG	3 cut(s)	51, 218, 587
MspA1I	CMGCKG	1 cut(s)	237
MspR9I	CCNGG	1 cut(s)	672
Mva1269I	GAATGC	1 cut(s)	509
MvaI	CCWGG	1 cut(s)	672
MwoI	GCNNNNNNNGC	3 cut(s)	31, 332, 476
NdeI	CATATG	3 cut(s)	174, 496, 793
NdeII	GATC	1 cut(s)	262
NlaIII	CATG	6 cut(s)	50, 99, 260, 650, 747, 831
NlaIV	GGNNCC	2 cut(s)	180, 534
NmuCI	GTSAC	1 cut(s)	739
NsiI	ATGCAT	1 cut(s)	648
NspI	RCATGY	4 cut(s)	99, 260, 650, 831
OliI	CACNNNNGTG	1 cut(s)	587
PctI	GAATGC	1 cut(s)	509
PfeI	GAWTC	3 cut(s)	169, 576, 592
PkrI	GCNGC	1 cut(s)	661
Ppu21I	YACGTR	2 cut(s)	452, 737
PsiI	TTATAA	2 cut(s)	68, 717
Psp6I	CCWGG	1 cut(s)	670
PspEI	GGTNACC	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	670
PspN4I	GGNNCC	2 cut(s)	180, 534
PspPI	GGNCC	1 cut(s)	545
PstNI	CAGNNNCTG	1 cut(s)	569
PvuII	CAGCTG	1 cut(s)	237
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
RseI	CAYNNNNRTG	3 cut(s)	51, 218, 587
SaqAI	TTAA	5 cut(s)	306, 341, 540, 614, 750
SatI	GCNGC	1 cut(s)	660
Sau3AI	GATC	1 cut(s)	262
Sau96I	GGNCC	1 cut(s)	545
ScrFI	CCNGG	1 cut(s)	672
SfaNI	GCATC	2 cut(s)	233, 633
SfcI	CTRYAG	1 cut(s)	618
SinI	GGWCC	1 cut(s)	545
SmiMI	CAYNNNNRTG	3 cut(s)	51, 218, 587
SmlI	CTYRAG	1 cut(s)	201
SmoI	CTYRAG	1 cut(s)	201
Sse9I	AATT	2 cut(s)	411, 690
SspMI	CTAG	3 cut(s)	299, 446, 603
StyD4I	CCNGG	1 cut(s)	670
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	1 cut(s)	619
TaiI	ACGT	2 cut(s)	454, 739
TasI	AATT	2 cut(s)	411, 690
TfiI	GAWTC	3 cut(s)	169, 576, 592
Tru1I	TTAA	5 cut(s)	306, 341, 540, 614, 750
Tru9I	TTAA	5 cut(s)	306, 341, 540, 614, 750
TseFI	GTSAC	1 cut(s)	739
TseI	GCWGC	1 cut(s)	659
Tsp45I	GTSAC	1 cut(s)	739
TspDTI	ATGAA	3 cut(s)	63, 161, 483
TspGWI	ACGGA	1 cut(s)	452
VpaK11BI	GGWCC	1 cut(s)	545
XbaI	TCTAGA	1 cut(s)	602
XceI	RCATGY	4 cut(s)	99, 260, 650, 831
XspI	CTAG	3 cut(s)	299, 446, 603
Zsp2I	ATGCAT	1 cut(s)	648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.