Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001232

Physical Location & Seq

Genomic Coordinates Forward (+)

29260041 .. 29260445

Gene Structure 405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1242300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAGAAATATCCGTCACACTTTAGCGCGTCAAGATATCTCTTTTGCGATCGTGGTTGTTGGTGAAGCTCCGTATGCATTAGGGGCTTACAGTTCGGAACTTATGATCCCGTTCAATGGAATGGATGTCATAAGCTCGATTGCTGACAGAATTCCCGTTTTGGCAATTCTGATTTCCGGAAGAACCTTAGTTTTAGAGCCCTGGCTCTTGGAAATGATGGATGCTCTTCTTGCTGCTTGGCTCCCTGGTACTGAAGGAGAAGGAATTGTAGATGCAATCTTTGGAGATTTTGACTTCGAGGGTAGACTCCGGGTGACATGGTTTAAAAGGGTTGAACTACTGCCTATGCATGCTGCAGACCCTTTATATCCGCTTGGCTTTGGGATGACATTCAATAAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

135

Amino Acids

14.91

Weight (kDa)

4.72

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3_C	PF01915	11 - 130	8.7e-20	Glycosyl hydrolase family 3 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47000 AT3G47000 AT3G47000 AT3G47010 AT3G47010 AT3G47010 AT3G47040 AT3G47040 AT3G47040 AT3G47050
fragaria_vesca	FvH4_3g38160 FvH4_3g38160 FvH4_4g11940
malus_domestica	MD02G1242000.v1.1 MD02G1242100.v1.1 MD02G1242200.v1.1 MD02G1242300.v1.1 MD11G1080700.v1.1
prunus_persica	Prupe.2G092300_v2.0.a1 Prupe.2G092300_v2.0.a1 Prupe.2G092300_v2.0.a1 Prupe.2G092600_v2.0.a1 Prupe.2G092900_v2.0.a1 Prupe.2G092900_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1
pyrus_communis	pycom02g20900 pycom11g06800 pycom11g06860
rosa_chinensis	RchiOBHm_Chr5g0068591 RchiOBHm_Chr6g0246121
rosa_laevigata	RLG00000035983 RLG00000036820 RLG00000036839
rosa_multiflora	Rmu_sc0004721.1_g000003
rosa_roxburghii	Rroxscaffold_1G00003560 Rroxscaffold_1G00012260 Rroxscaffold_3G00247860 Rroxscaffold_7G00214870
rosa_rugosa	Rorug05G0391700 Rorug05G0464600 Rorug05G0465200 Rorug05G0465800
rosa_samantha	Rh5AG449400 Rh5BG467600 Rh5DG481000 Rh5DG551200 Rh5DG552100 Rh7AG258000 Rh7CG274700 Rh7DG265200
rosa_wichuraiana	Rw5G041960 Rw5G048090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	304
AccII	CGCG	1 cut(s)	28
AccIII	TCCGGA	1 cut(s)	176
AciI	CCGC	1 cut(s)	371
AclWI	GGATC	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	150
AcuI	CTGAAG	1 cut(s)	273
AfaI	GTAC	1 cut(s)	250
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgsI	TTSAA	3 cut(s)	115, 335, 394
AjnI	CCWGG	2 cut(s)	200, 244
AloI	GAACNNNNNNTCC	2 cut(s)	90, 122
AluBI	AGCT	2 cut(s)	68, 135
AluI	AGCT	2 cut(s)	68, 135
AlwI	GGATC	1 cut(s)	100
Aor13HI	TCCGGA	1 cut(s)	176
ApeKI	GCWGC	2 cut(s)	233, 353
ApoI	RAATTY	1 cut(s)	150
AspLEI	GCGC	1 cut(s)	28
AsuC2I	CCSGG	1 cut(s)	311
AsuHPI	GGTGA	2 cut(s)	74, 325
BanII	GRGCYC	1 cut(s)	201
BbvI	GCAGC	2 cut(s)	220, 340
BccI	CCATC	1 cut(s)	211
BciT130I	CCWGG	2 cut(s)	202, 246
BcnI	CCSGG	1 cut(s)	311
BfmI	CTRYAG	1 cut(s)	354
BisI	GCNGC	2 cut(s)	234, 354
BlsI	GCNGC	2 cut(s)	235, 355
Bme1390I	CCNGG	3 cut(s)	202, 246, 311
BmiI	GGNNCC	1 cut(s)	242
BmrFI	CCNGG	3 cut(s)	202, 246, 311
BmsI	GCATC	2 cut(s)	211, 262
BpuMI	CCSGG	1 cut(s)	311
BsaJI	CCNNGG	2 cut(s)	200, 244
BsaWI	WCCGGW	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
BseAI	TCCGGA	1 cut(s)	176
BseBI	CCWGG	2 cut(s)	202, 246
BseDI	CCNNGG	2 cut(s)	200, 244
BseGI	GGATG	3 cut(s)	130, 226, 390
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseXI	GCAGC	2 cut(s)	220, 340
Bsh1236I	CGCG	1 cut(s)	28
Bsh1285I	CGRYCG	1 cut(s)	51
BsiEI	CGRYCG	1 cut(s)	51
BsiSI	CCGG	2 cut(s)	177, 310
BslI	CCNNNNNNNGG	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp13I	TCCGGA	1 cut(s)	176
Bsp143I	GATC	2 cut(s)	48, 105
BspACI	CCGC	1 cut(s)	371
BspEI	TCCGGA	1 cut(s)	176
BspFNI	CGCG	1 cut(s)	28
BspLI	GGNNCC	1 cut(s)	242
BspMAI	CTGCAG	1 cut(s)	358
BspPI	GGATC	1 cut(s)	100
BspQI	GCTCTTC	1 cut(s)	231
BssECI	CCNNGG	2 cut(s)	200, 244
BssMI	GATC	2 cut(s)	48, 105
Bst2UI	CCWGG	2 cut(s)	202, 246
Bst4CI	ACNGT	1 cut(s)	92
Bst6I	CTCTTC	1 cut(s)	231
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	1 cut(s)	187
BstF5I	GGATG	3 cut(s)	130, 226, 390
BstFNI	CGCG	1 cut(s)	28
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	2 cut(s)	51, 108
BstMBI	GATC	2 cut(s)	48, 105
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 83, 230
BstNI	CCWGG	2 cut(s)	202, 246
BstNSI	RCATGY	1 cut(s)	353
BstSCI	CCNGG	3 cut(s)	200, 244, 309
BstSFI	CTRYAG	1 cut(s)	354
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	2 cut(s)	220, 340
BtsCI	GGATG	3 cut(s)	130, 226, 390
Cac8I	GCNNGC	1 cut(s)	351
CfoI	GCGC	1 cut(s)	28
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	249
CviAII	CATG	2 cut(s)	318, 350
CviJI	RGCY	7 cut(s)	68, 86, 135, 199, 205, 241, 378
CviKI_1	RGCY	7 cut(s)	68, 86, 135, 199, 205, 241, 378
CviQI	GTAC	1 cut(s)	249
DdeI	CTNAG	1 cut(s)	187
DpnI	GATC	2 cut(s)	50, 107
DpnII	GATC	2 cut(s)	48, 105
DraI	TTTAAA	1 cut(s)	325
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Eco24I	GRGCYC	1 cut(s)	201
Eco32I	GATATC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	273
EcoRI	GAATTC	1 cut(s)	150
EcoRII	CCWGG	2 cut(s)	200, 244
EcoRV	GATATC	1 cut(s)	37
EcoT22I	ATGCAT	2 cut(s)	79, 351
EcoT38I	GRGCYC	1 cut(s)	201
FaeI	CATG	2 cut(s)	321, 353
FaiI	YATR	7 cut(s)	75, 104, 131, 319, 347, 351, 367
FatI	CATG	2 cut(s)	317, 349
FblI	GTMKAC	1 cut(s)	304
Fnu4HI	GCNGC	2 cut(s)	234, 354
FokI	GGATG	3 cut(s)	137, 233, 397
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	2 cut(s)	234, 354
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	2 cut(s)	234, 354
HapII	CCGG	2 cut(s)	177, 310
HgaI	GACGC	1 cut(s)	17
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	2 cut(s)	321, 353
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HinfI	GANTC	1 cut(s)	306
HpaII	CCGG	2 cut(s)	177, 310
HphI	GGTGA	2 cut(s)	74, 325
Hpy166II	GTNNAC	1 cut(s)	305
Hpy188I	TCNGA	2 cut(s)	97, 171
Hpy188III	TCNNGA	2 cut(s)	32, 177
Hpy8I	GTNNAC	1 cut(s)	305
HpyAV	CCTTC	2 cut(s)	248, 254
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4V	TGCA	4 cut(s)	77, 275, 349, 356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 83, 230
HpyF3I	CTNAG	1 cut(s)	187
Hsp92II	CATG	2 cut(s)	321, 353
HspAI	GCGC	1 cut(s)	26
Kpn2I	TCCGGA	1 cut(s)	176
Kzo9I	GATC	2 cut(s)	48, 105
LguI	GCTCTTC	1 cut(s)	231
LmnI	GCTCC	2 cut(s)	73, 246
LpnPI	CCDG	6 cut(s)	187, 190, 214, 231, 258, 323
Lsp1109I	GCAGC	2 cut(s)	220, 340
LweI	GCATC	2 cut(s)	211, 262
MaeIII	GTNAC	2 cut(s)	14, 313
MalI	GATC	2 cut(s)	50, 107
MboI	GATC	2 cut(s)	48, 105
MboII	GAAGA	2 cut(s)	192, 218
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	3 cut(s)	150, 165, 264
MlyI	GAGTC	1 cut(s)	300
MnlI	CCTC	1 cut(s)	292
Mph1103I	ATGCAT	2 cut(s)	79, 351
MroI	TCCGGA	1 cut(s)	176
MseI	TTAA	1 cut(s)	324
MspI	CCGG	2 cut(s)	177, 310
MspR9I	CCNGG	3 cut(s)	202, 246, 311
MvaI	CCWGG	2 cut(s)	202, 246
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	3 cut(s)	74, 83, 230
NciI	CCSGG	1 cut(s)	311
NdeII	GATC	2 cut(s)	48, 105
NlaIII	CATG	2 cut(s)	321, 353
NlaIV	GGNNCC	1 cut(s)	242
NmuCI	GTSAC	2 cut(s)	14, 313
NsiI	ATGCAT	2 cut(s)	79, 351
NspI	RCATGY	1 cut(s)	353
PaeI	GCATGC	1 cut(s)	353
PciSI	GCTCTTC	1 cut(s)	231
PkrI	GCNGC	2 cut(s)	235, 355
Ple19I	CGATCG	1 cut(s)	51
PleI	GAGTC	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	300
Psp6I	CCWGG	2 cut(s)	200, 244
PspGI	CCWGG	2 cut(s)	200, 244
PspN4I	GGNNCC	1 cut(s)	242
PstI	CTGCAG	1 cut(s)	358
PvuI	CGATCG	1 cut(s)	51
RsaI	GTAC	1 cut(s)	250
RsaNI	GTAC	1 cut(s)	249
SapI	GCTCTTC	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	2 cut(s)	234, 354
Sau3AI	GATC	2 cut(s)	48, 105
SchI	GAGTC	1 cut(s)	300
ScrFI	CCNGG	3 cut(s)	202, 246, 311
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	3 cut(s)	70, 137, 188
SfaNI	GCATC	2 cut(s)	211, 262
SfcI	CTRYAG	1 cut(s)	354
SphI	GCATGC	1 cut(s)	353
Sse9I	AATT	3 cut(s)	150, 165, 264
SsiI	CCGC	1 cut(s)	371
StyD4I	CCNGG	3 cut(s)	200, 244, 309
TaaI	ACNGT	1 cut(s)	92
TaqI	TCGA	2 cut(s)	137, 297
TasI	AATT	3 cut(s)	150, 165, 264
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TseFI	GTSAC	2 cut(s)	14, 313
TseI	GCWGC	2 cut(s)	233, 353
Tsp45I	GTSAC	2 cut(s)	14, 313
TspGWI	ACGGA	1 cut(s)	60
XapI	RAATTY	1 cut(s)	150
XceI	RCATGY	1 cut(s)	353
XmiI	GTMKAC	1 cut(s)	304
Zsp2I	ATGCAT	2 cut(s)	79, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.