Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001232

Physical Location & Seq

Genomic Coordinates Reverse (-)

4382494 .. 4383809

Gene Structure 1316 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00003560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGCAGTTTATGGTGCCTTTCAGATTTGAAAATTTTGTAGATGATTTAGTGAATCTGGTGGAACATGGGGAGATACCAATGTCCAGGATAGATGATGCTGTTGAGAGAATACTGAGATTAAAGTTTGTTGCTGGTCTTTTTGAACATCCCTTTTCTGATAGATCTTTGCTGGACAAAGTTGGTTGTAAGCTGCATAGGGACCTGGCACGCGAAGCTGTTCACAATTCATTGGTTCTGTTGAAGAATGGAAAGGAGCCAAGAAAACCTTTTCTTCCATTAGATAGAAAAGCCAAAAGAATACTGGTTACCGGAACGCATGCTGATGATCTTGGATATCAGTGTGGAGGATGGACAGTTACTAAGTCTGGATTGAGTGGCAGGTTCACCATTGGCACAACCATCTTGGAAGCTATCAAGAAGGCAGTTGGAGAGGAAACAGAAATAATTTATGAGCAACTGCCATCGACGTATAACCTAGCACGTAAAGATATCTCTTTTGCAGTTGTTGCTGTTGGTGAAGGTTCATATGCCGAATGCAAGGGCGACAACTTGGAGCTTGTGATTCCTTTTGATGGACCCGATGTAATAAGCTCAGTTGCTGACAGAATCCCCACATTGGTGATTCTGTTATCTGGAAGACCCTTAACTGTAGAGCCAAGTCTCTTGGAAAAGATGGATGCTCTTGTTGCTGCTTGCTTGCCTGGTACTGAAGGAGAGGGAATTGCAGATGTTATCTTTGGAGATTATACCTTCGAGGGCAAGCTCCCAGTGACATGCTTTAAAAGTGTTGAACAGCTCCCATTGGATGTCGGAAGCAACTCATATGACCCTATATATCCTCTTGGGTTTGGATTGACATGCAATACGGAGAAAGTTACACACCAAGCAGATTTTGATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

300

Amino Acids

33.02

Weight (kDa)

5.04

Isoelectric Point (pI)

27.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3_C	PF01915	77 - 286	6.3e-35	Glycosyl hydrolase family 3 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47000 AT3G47000 AT3G47000 AT3G47010 AT3G47010 AT3G47010 AT3G47040 AT3G47040 AT3G47040 AT3G47050
fragaria_vesca	FvH4_3g38160 FvH4_3g38160 FvH4_4g11940
malus_domestica	MD02G1242000.v1.1 MD02G1242100.v1.1 MD02G1242200.v1.1 MD02G1242300.v1.1 MD11G1080700.v1.1
prunus_persica	Prupe.2G092300_v2.0.a1 Prupe.2G092300_v2.0.a1 Prupe.2G092300_v2.0.a1 Prupe.2G092600_v2.0.a1 Prupe.2G092900_v2.0.a1 Prupe.2G092900_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1
pyrus_communis	pycom02g20900 pycom11g06800 pycom11g06860
rosa_chinensis	RchiOBHm_Chr5g0068591 RchiOBHm_Chr6g0246121
rosa_laevigata	RLG00000035983 RLG00000036820 RLG00000036839
rosa_multiflora	Rmu_sc0004721.1_g000003
rosa_roxburghii	Rroxscaffold_1G00003560 Rroxscaffold_1G00012260 Rroxscaffold_3G00247860 Rroxscaffold_7G00214870
rosa_rugosa	Rorug05G0391700 Rorug05G0464600 Rorug05G0465200 Rorug05G0465800
rosa_samantha	Rh5AG449400 Rh5BG467600 Rh5DG481000 Rh5DG551200 Rh5DG552100 Rh7AG258000 Rh7CG274700 Rh7DG265200
rosa_wichuraiana	Rw5G041960 Rw5G048090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	369
AccB1I	GGYRCC	1 cut(s)	13
AccII	CGCG	1 cut(s)	210
AcsI	RAATTY	1 cut(s)	31
AcuI	CTGAAG	1 cut(s)	729
AfaI	GTAC	1 cut(s)	706
AfiI	CCNNNNNNNGG	2 cut(s)	572, 616
AgsI	TTSAA	4 cut(s)	29, 143, 241, 791
AjnI	CCWGG	3 cut(s)	83, 201, 700
AleI	CACNNNNGTG	1 cut(s)	617
AluBI	AGCT	7 cut(s)	190, 215, 410, 556, 591, 763, 796
AluI	AGCT	7 cut(s)	190, 215, 410, 556, 591, 763, 796
Alw26I	GTCTC	1 cut(s)	665
AlwNI	CAGNNNCTG	1 cut(s)	599
ApeKI	GCWGC	2 cut(s)	190, 689
ApoI	RAATTY	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	216
AspS9I	GGNCC	2 cut(s)	199, 575
AsuHPI	GGTGA	3 cut(s)	376, 527, 631
AvaII	GGWCC	2 cut(s)	199, 575
BaeI	ACNNNNGTAYC	2 cut(s)	65, 98
BanI	GGYRCC	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	643
BbvI	GCAGC	2 cut(s)	177, 676
BccI	CCATC	5 cut(s)	342, 407, 469, 566, 667
BciT130I	CCWGG	3 cut(s)	85, 203, 702
BcoDI	GTCTC	1 cut(s)	665
BfaI	CTAG	1 cut(s)	476
BfmI	CTRYAG	1 cut(s)	648
BfuAI	ACCTGC	1 cut(s)	369
BglII	AGATCT	1 cut(s)	161
BisI	GCNGC	2 cut(s)	191, 690
BlsI	GCNGC	2 cut(s)	192, 691
Bme1390I	CCNGG	3 cut(s)	85, 203, 702
Bme18I	GGWCC	2 cut(s)	199, 575
BmgT120I	GGNCC	2 cut(s)	199, 575
BmiI	GGNNCC	4 cut(s)	15, 200, 255, 577
BmrFI	CCNGG	3 cut(s)	85, 203, 702
BmrI	ACTGGG	1 cut(s)	761
BmsI	GCATC	2 cut(s)	85, 667
BmuI	ACTGGG	1 cut(s)	761
BpiI	GAAGAC	1 cut(s)	643
BsaAI	YACGTR	1 cut(s)	482
BsaWI	WCCGGW	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	2 cut(s)	572, 616
Bse1I	ACTGG	2 cut(s)	306, 767
BseBI	CCWGG	3 cut(s)	85, 203, 702
BseGI	GGATG	4 cut(s)	145, 353, 682, 811
BseLI	CCNNNNNNNGG	2 cut(s)	572, 616
BseMII	CTCAG	2 cut(s)	104, 606
BseNI	ACTGG	2 cut(s)	306, 767
BseXI	GCAGC	2 cut(s)	177, 676
Bsh1236I	CGCG	1 cut(s)	210
BshNI	GGYRCC	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	309
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	2 cut(s)	572, 616
BsmAI	GTCTC	1 cut(s)	665
BsmFI	GGGAC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	539
Bsp143I	GATC	2 cut(s)	161, 325
BspCNI	CTCAG	2 cut(s)	105, 605
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	4 cut(s)	15, 200, 255, 577
BspMI	ACCTGC	1 cut(s)	369
BspT107I	GGYRCC	1 cut(s)	13
BsrI	ACTGG	2 cut(s)	306, 767
BssMI	GATC	2 cut(s)	161, 325
Bst2UI	CCWGG	3 cut(s)	85, 203, 702
Bst4CI	ACNGT	2 cut(s)	355, 649
BstAPI	GCANNNNNTGC	1 cut(s)	506
BstBAI	YACGTR	1 cut(s)	482
BstC8I	GCNNGC	5 cut(s)	208, 318, 694, 698, 761
BstDEI	CTNAG	3 cut(s)	113, 360, 592
BstEII	GGTNACC	1 cut(s)	304
BstF5I	GGATG	4 cut(s)	145, 353, 682, 811
BstFNI	CGCG	1 cut(s)	210
BstKTI	GATC	2 cut(s)	164, 328
BstMAI	GTCTC	1 cut(s)	665
BstMBI	GATC	2 cut(s)	161, 325
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 506, 686
BstNI	CCWGG	3 cut(s)	85, 203, 702
BstNSI	RCATGY	3 cut(s)	320, 777, 861
BstPI	GGTNACC	1 cut(s)	304
BstSCI	CCNGG	3 cut(s)	83, 201, 700
BstSFI	CTRYAG	1 cut(s)	648
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	2 cut(s)	177, 676
BstV2I	GAAGAC	1 cut(s)	643
BstX2I	RGATCY	1 cut(s)	161
BstYI	RGATCY	1 cut(s)	161
BtsCI	GGATG	4 cut(s)	145, 353, 682, 811
BtsIMutI	CAGTG	2 cut(s)	344, 774
BveI	ACCTGC	1 cut(s)	369
Cac8I	GCNNGC	5 cut(s)	208, 318, 694, 698, 761
CaiI	CAGNNNCTG	1 cut(s)	599
Cfr13I	GGNCC	2 cut(s)	199, 575
Csp6I	GTAC	1 cut(s)	705
CviAII	CATG	4 cut(s)	65, 317, 774, 858
CviQI	GTAC	1 cut(s)	705
DdeI	CTNAG	3 cut(s)	113, 360, 592
DpnI	GATC	2 cut(s)	163, 327
DpnII	GATC	2 cut(s)	161, 325
DraI	TTTAAA	1 cut(s)	781
Eco32I	GATATC	2 cut(s)	335, 490
Eco47I	GGWCC	2 cut(s)	199, 575
Eco57I	CTGAAG	1 cut(s)	729
Eco91I	GGTNACC	1 cut(s)	304
EcoO109I	RGGNCCY	1 cut(s)	199
EcoO65I	GGTNACC	1 cut(s)	304
EcoRII	CCWGG	3 cut(s)	83, 201, 700
EcoRV	GATATC	2 cut(s)	335, 490
FaeI	CATG	4 cut(s)	68, 320, 777, 861
FalI	AAGNNNNNCTT	2 cut(s)	250, 282
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	4 cut(s)	64, 316, 773, 857
FauNDI	CATATG	2 cut(s)	526, 823
Fnu4HI	GCNGC	2 cut(s)	191, 690
FokI	GGATG	4 cut(s)	132, 360, 689, 818
Fsp4HI	GCNGC	2 cut(s)	191, 690
FspBI	CTAG	1 cut(s)	476
GluI	GCNGC	2 cut(s)	191, 690
HapII	CCGG	1 cut(s)	309
Hin1II	CATG	4 cut(s)	68, 320, 777, 861
HinfI	GANTC	4 cut(s)	52, 562, 606, 622
HpaII	CCGG	1 cut(s)	309
HphI	GGTGA	3 cut(s)	376, 527, 631
Hpy166II	GTNNAC	2 cut(s)	220, 384
Hpy188I	TCNGA	3 cut(s)	23, 157, 812
Hpy188III	TCNNGA	3 cut(s)	366, 415, 633
Hpy8I	GTNNAC	2 cut(s)	220, 384
Hpy99I	CGWCG	1 cut(s)	469
HpyAV	CCTTC	4 cut(s)	412, 512, 704, 760
HpyCH4III	ACNGT	2 cut(s)	355, 649
HpyCH4IV	ACGT	2 cut(s)	467, 481
HpyCH4V	TGCA	6 cut(s)	4, 193, 500, 537, 725, 861
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 506, 686
HpyF3I	CTNAG	3 cut(s)	113, 360, 592
HpySE526I	ACGT	2 cut(s)	467, 481
Hsp92II	CATG	4 cut(s)	68, 320, 777, 861
Kzo9I	GATC	2 cut(s)	161, 325
LmnI	GCTCC	4 cut(s)	253, 553, 768, 801
Lsp1109I	GCAGC	2 cut(s)	177, 676
LweI	GCATC	2 cut(s)	85, 667
MaeI	CTAG	1 cut(s)	476
MaeII	ACGT	2 cut(s)	467, 481
MaeIII	GTNAC	4 cut(s)	304, 355, 769, 874
MalI	GATC	2 cut(s)	163, 327
MboI	GATC	2 cut(s)	161, 325
MboII	GAAGA	3 cut(s)	253, 263, 648
MflI	RGATCY	1 cut(s)	161
MluCI	AATT	4 cut(s)	31, 223, 444, 720
MmeI	TCCRAC	2 cut(s)	406, 790
MnlI	CCTC	5 cut(s)	338, 424, 709, 748, 849
MroXI	GAANNNNTTC	1 cut(s)	216
MseI	TTAA	3 cut(s)	119, 644, 780
MslI	CAYNNNNRTG	2 cut(s)	321, 617
MspI	CCGG	1 cut(s)	309
MspR9I	CCNGG	3 cut(s)	85, 203, 702
Mva1269I	GAATGC	1 cut(s)	539
MvaI	CCWGG	3 cut(s)	85, 203, 702
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	3 cut(s)	212, 506, 686
NdeI	CATATG	2 cut(s)	526, 823
NdeII	GATC	2 cut(s)	161, 325
NlaIII	CATG	4 cut(s)	68, 320, 777, 861
NlaIV	GGNNCC	4 cut(s)	15, 200, 255, 577
NmuCI	GTSAC	1 cut(s)	769
NspI	RCATGY	3 cut(s)	320, 777, 861
OliI	CACNNNNGTG	1 cut(s)	617
PaeI	GCATGC	1 cut(s)	320
PctI	GAATGC	1 cut(s)	539
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	4 cut(s)	52, 562, 606, 622
PfoI	TCCNGGA	1 cut(s)	83
PkrI	GCNGC	2 cut(s)	192, 691
Ppu21I	YACGTR	1 cut(s)	482
PpuMI	RGGWCCY	1 cut(s)	199
Psp5II	RGGWCCY	1 cut(s)	199
Psp6I	CCWGG	3 cut(s)	83, 201, 700
PspEI	GGTNACC	1 cut(s)	304
PspGI	CCWGG	3 cut(s)	83, 201, 700
PspN4I	GGNNCC	4 cut(s)	15, 200, 255, 577
PspPI	GGNCC	2 cut(s)	199, 575
PspPPI	RGGWCCY	1 cut(s)	199
PstNI	CAGNNNCTG	1 cut(s)	599
PsuI	RGATCY	1 cut(s)	161
RsaI	GTAC	1 cut(s)	706
RsaNI	GTAC	1 cut(s)	705
RseI	CAYNNNNRTG	2 cut(s)	321, 617
SaqAI	TTAA	3 cut(s)	119, 644, 780
SatI	GCNGC	2 cut(s)	191, 690
Sau3AI	GATC	2 cut(s)	161, 325
Sau96I	GGNCC	2 cut(s)	199, 575
ScrFI	CCNGG	3 cut(s)	85, 203, 702
SfaNI	GCATC	2 cut(s)	85, 667
SfcI	CTRYAG	1 cut(s)	648
SinI	GGWCC	2 cut(s)	199, 575
SmiMI	CAYNNNNRTG	2 cut(s)	321, 617
SphI	GCATGC	1 cut(s)	320
Sse9I	AATT	4 cut(s)	31, 223, 444, 720
SspMI	CTAG	1 cut(s)	476
StyD4I	CCNGG	3 cut(s)	83, 201, 700
TaaI	ACNGT	2 cut(s)	355, 649
TaiI	ACGT	2 cut(s)	470, 484
TaqI	TCGA	2 cut(s)	464, 753
TasI	AATT	4 cut(s)	31, 223, 444, 720
TfiI	GAWTC	4 cut(s)	52, 562, 606, 622
Tru1I	TTAA	3 cut(s)	119, 644, 780
Tru9I	TTAA	3 cut(s)	119, 644, 780
TscAI	CASTG	2 cut(s)	344, 774
TseFI	GTSAC	1 cut(s)	769
TseI	GCWGC	2 cut(s)	190, 689
Tsp45I	GTSAC	1 cut(s)	769
TspDTI	ATGAA	2 cut(s)	216, 513
TspGWI	ACGGA	1 cut(s)	881
TspRI	CASTG	2 cut(s)	344, 774
VpaK11BI	GGWCC	2 cut(s)	199, 575
XapI	RAATTY	1 cut(s)	31
XceI	RCATGY	3 cut(s)	320, 777, 861
XcmI	CCANNNNNNNNNTGG	1 cut(s)	298
XmnI	GAANNNNTTC	1 cut(s)	216
XspI	CTAG	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.