Rmu_sc0004721.1_g000003

Belongs to the glycosyl hydrolase 3 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004721.1
Physical Location & Seq
Reverse (-)
14596 .. 18490
3895 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004721.1_g000003.1.cds

Sequence Viewer

Length: 1656 bp
atggaaaaagctgaggacttgaattgcatatacagaaacccaaatgagcccattgaagctcgagtgaaggacctcctttctcgcatgactttgagagagaaagtgggccagatgacccaaatagagcgtcgggttgccaccccttctgccattaaagacttctacatagggagtatattgaatgctggaggcagtgggccatttgagaatgctgagtcagcggactgggccgatatggtggacgggtttcagaggtccgctctcgaaacccggctccagattccgatggtgtatgggattgatgcggttcatgggaacaataatgtgtatggtgccaccattttccctcacaatgttggtcttggggctaccagagacgcagatttggctgagaggattggtgtggcaactgctcttgaagtcagggcgagcggcattccgtacacttttgctccctgtgtggctgtatgtagagatcccagatggggaagatgctatgagagttacagtgaagacactgaaactgttcgaaagatgacatctattatttcaggcttgcaggggaagccaccccaaggacatgaaaagggttacccttttgtaatgggaagaaacaacactattgcatgtgccaagcattttgttggagatggggggtatgctctgctgcagggtattgtgatctctgactgggcagcacttgacaaaatttgcgaacctccagggtcaaacaatcgtttctgcattttatctggcattaatgctggaattgacatggttatggtgcctttcaaatttgaacagtttgcagaggatttagtatatctagtggaacatggggagataccaatggccagaatagatgatgctgttgaaagaatactgagagtcaagtttgttgctggtcttttcgagcatccctttgctgatagatctttgcttgacatagttggttgcaagccgcatagagatttagcacgcgaagctgtccgcaagtccttggtactgttgaagaatggaaaggacccaaaaaagccttttcttccattagatagaaaagctaaaagaattcttgttactggaacacatgctgatgatcttggatatcagtgtggaggatggacagctacttgggatggaaaaagtggcaggataacaattggcacaaccatcttggaagctatccagaaggcagttggagaagaaacagaaataatttatgagccatatccatcaacagacaccttagcacgtcaagatatctctttcgcaattgtagctgttggtgaagatccatatgcagaattcactggtgacaaatcggagcttgtgatcccttttagtggacctgatatcataagctcagttgcagaccgaatccccacattggtgattctgatatcgggaagacccttaactttagagccaagtctcctggaaaagatggatgctttcattgctgcttggttgcctggtagtgaaggagaggggattacagatgttatctttggagattatgacttcgaaggcaagctaccggtgacatggtttagaagtattgaacagctgccattaaatgttggaagcaaaacatatgaccctttgtatcctttcggcttcggtttgaaatacaataaggacaatgctccacattag

Protein Analysis

551

Amino Acids

60.64

Weight (kDa)

5.14

Isoelectric Point (pI)

30.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 332, 784
AccBSI CCGCTC 2 cut(s) 260, 432
AccII CGCG 1 cut(s) 981
AciI CCGC 6 cut(s) 221, 258, 305, 432, 962, 991
AclWI GGATC 3 cut(s) 470, 1286, 1327
AcoI YGGCCR 1 cut(s) 852
AcsI RAATTY 4 cut(s) 708, 794, 1068, 1304
AfaI GTAC 2 cut(s) 443, 1005
AfiI CCNNNNNNNGG 4 cut(s) 485, 575, 1343, 1387
AgeI ACCGGT 1 cut(s) 1537
AjiI CACGTC 1 cut(s) 1253
AjnI CCWGG 3 cut(s) 721, 1434, 1471
AleI CACNNNNGTG 1 cut(s) 1388
Alw26I GTCTC 2 cut(s) 369, 1436
AlwI GGATC 3 cut(s) 470, 1286, 1327
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 4 cut(s) 106, 197, 228, 852
ApeKI GCWGC 4 cut(s) 667, 695, 1460, 1567
ApoI RAATTY 4 cut(s) 708, 794, 1068, 1304
ArsI GACNNNNNNTTYG 2 cut(s) 112, 144
AseI ATTAAT 1 cut(s) 759
AsiGI ACCGGT 1 cut(s) 1537
Asp700I GAANNNNTTC 1 cut(s) 525
AspS9I GGNCC 7 cut(s) 70, 106, 197, 228, 255, 1024, 1346
AsuC2I CCSGG 1 cut(s) 271
AsuHPI GGTGA 4 cut(s) 1298, 1325, 1402, 1552
AsuII TTCGAA 2 cut(s) 529, 1524
AvaI CYCGRG 1 cut(s) 60
AvaII GGWCC 4 cut(s) 70, 255, 1024, 1346
BalI TGGCCA 1 cut(s) 854
BanI GGYRCC 2 cut(s) 332, 784
BanII GRGCYC 1 cut(s) 51
BarI GAAGNNNNNNTAC 2 cut(s) 1518, 1550
BbsI GAAGAC 2 cut(s) 519, 1414
BbvCI CCTCAGC 1 cut(s) 12
BbvI GCAGC 4 cut(s) 654, 707, 1447, 1554
BccI CCATC 8 cut(s) 280, 477, 644, 1113, 1130, 1178, 1240, 1438
BciT130I CCWGG 3 cut(s) 723, 1436, 1473
BciVI GTATCC 1 cut(s) 1617
BcnI CCSGG 1 cut(s) 271
BcoDI GTCTC 2 cut(s) 369, 1436
BfaI CTAG 1 cut(s) 827
BfmI CTRYAG 1 cut(s) 668
BfuI GTATCC 1 cut(s) 1617
BglII AGATCT 1 cut(s) 932
BisI GCNGC 6 cut(s) 433, 668, 696, 962, 1461, 1568
BlsI GCNGC 6 cut(s) 434, 669, 697, 963, 1462, 1569
Bme1390I CCNGG 4 cut(s) 271, 723, 1436, 1473
Bme18I GGWCC 4 cut(s) 70, 255, 1024, 1346
BmeT110I CYCGRG 1 cut(s) 60
BmgBI CACGTC 1 cut(s) 1253
BmgT120I GGNCC 7 cut(s) 70, 106, 197, 228, 255, 1024, 1346
BmiI GGNNCC 4 cut(s) 275, 334, 786, 1026
BmrFI CCNGG 4 cut(s) 271, 723, 1436, 1473
BmrI ACTGGG 2 cut(s) 235, 700
BmsI GCATC 5 cut(s) 292, 482, 856, 925, 1438
BmuI ACTGGG 2 cut(s) 235, 700
BpiI GAAGAC 2 cut(s) 519, 1414
BplI GAGNNNNNCTC 2 cut(s) 244, 276
BpmI CTGGAG 3 cut(s) 207, 260, 705
Bpu10I CCTNAGC 2 cut(s) 12, 1246
Bpu14I TTCGAA 2 cut(s) 529, 1524
BpuMI CCSGG 1 cut(s) 271
BsaJI CCNNGG 3 cut(s) 574, 722, 999
BsaWI WCCGGW 1 cut(s) 1537
BsaXI ACNNNNNCTCC 2 cut(s) 436, 466
Bsc4I CCNNNNNNNGG 4 cut(s) 485, 575, 1343, 1387
Bse118I RCCGGY 1 cut(s) 1537
Bse1I ACTGG 4 cut(s) 230, 695, 1084, 1315
Bse3DI GCAATG 1 cut(s) 1455
BseBI CCWGG 3 cut(s) 723, 1436, 1473
BseDI CCNNGG 3 cut(s) 574, 722, 999
BseGI GGATG 4 cut(s) 916, 1124, 1141, 1453
BseLI CCNNNNNNNGG 4 cut(s) 485, 575, 1343, 1387
BseMI GCAATG 1 cut(s) 1455
BseMII CTCAG 4 cut(s) 204, 381, 875, 1377
BseNI ACTGG 4 cut(s) 230, 695, 1084, 1315
BseXI GCAGC 4 cut(s) 654, 707, 1447, 1554
Bsh1236I CGCG 1 cut(s) 981
BshFI GGCC 4 cut(s) 108, 199, 230, 854
BshNI GGYRCC 2 cut(s) 332, 784
BshTI ACCGGT 1 cut(s) 1537
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 2 cut(s) 271, 1538
BslI CCNNNNNNNGG 4 cut(s) 485, 575, 1343, 1387
BsmAI GTCTC 2 cut(s) 369, 1436
BsmBI CGTCTC 1 cut(s) 369
BsmI GAATGC 3 cut(s) 187, 214, 435
BsnI GGCC 4 cut(s) 108, 199, 230, 854
BsoBI CYCGRG 1 cut(s) 60
Bsp119I TTCGAA 2 cut(s) 529, 1524
Bsp1286I GDGCHC 1 cut(s) 51
Bsp143I GATC 6 cut(s) 475, 681, 932, 1096, 1291, 1332
BspACI CCGC 6 cut(s) 221, 258, 305, 432, 962, 991
BspANI GGCC 4 cut(s) 108, 199, 230, 854
BspCNI CTCAG 5 cut(s) 4, 205, 382, 876, 1376
BspFNI CGCG 1 cut(s) 981
BspLI GGNNCC 4 cut(s) 275, 334, 786, 1026
BspMAI CTGCAG 1 cut(s) 672
BspPI GGATC 3 cut(s) 470, 1286, 1327
BspT104I TTCGAA 2 cut(s) 529, 1524
BspT107I GGYRCC 2 cut(s) 332, 784
BsrBI CCGCTC 2 cut(s) 260, 432
BsrDI GCAATG 1 cut(s) 1455
BsrFI RCCGGY 1 cut(s) 1537
BsrI ACTGG 4 cut(s) 230, 695, 1084, 1315
BssAI RCCGGY 1 cut(s) 1537
BssECI CCNNGG 3 cut(s) 574, 722, 999
BssMI GATC 6 cut(s) 475, 681, 932, 1096, 1291, 1332
BssT1I CCWWGG 2 cut(s) 574, 999
Bst2UI CCWGG 3 cut(s) 723, 1436, 1473
Bst4CI ACNGT 4 cut(s) 509, 526, 804, 1008
BstBI TTCGAA 2 cut(s) 529, 1524
BstC8I GCNNGC 5 cut(s) 430, 557, 959, 979, 1532
BstDEI CTNAG 6 cut(s) 12, 213, 390, 884, 1246, 1363
BstEII GGTNACC 1 cut(s) 590
BstF5I GGATG 4 cut(s) 916, 1124, 1141, 1453
BstFNI CGCG 1 cut(s) 981
BstKTI GATC 6 cut(s) 478, 684, 935, 1099, 1294, 1335
BstMAI GTCTC 2 cut(s) 369, 1436
BstMBI GATC 6 cut(s) 475, 681, 932, 1096, 1291, 1332
BstMWI GCNNNNNNNGC 7 cut(s) 218, 227, 386, 565, 983, 1277, 1457
BstNI CCWGG 3 cut(s) 723, 1436, 1473
BstNSI RCATGY 2 cut(s) 630, 1091
BstPI GGTNACC 1 cut(s) 590
BstSCI CCNGG 4 cut(s) 269, 721, 1434, 1471
BstSFI CTRYAG 1 cut(s) 668
BstUI CGCG 1 cut(s) 981
BstV1I GCAGC 4 cut(s) 654, 707, 1447, 1554
BstV2I GAAGAC 2 cut(s) 519, 1414
BstX2I RGATCY 3 cut(s) 475, 932, 1291
BstYI RGATCY 3 cut(s) 475, 932, 1291
BsuI GTATCC 1 cut(s) 1617
BsuRI GGCC 4 cut(s) 108, 199, 230, 854
BtrI CACGTC 1 cut(s) 1253
BtsCI GGATG 4 cut(s) 916, 1124, 1141, 1453
BtsI GCAGTG 1 cut(s) 199
BtsIMutI CAGTG 5 cut(s) 199, 514, 516, 1115, 1308
Cac8I GCNNGC 5 cut(s) 430, 557, 959, 979, 1532
Cfr10I RCCGGY 1 cut(s) 1537
Cfr13I GGNCC 7 cut(s) 70, 106, 197, 228, 255, 1024, 1346
CseI GACGC 2 cut(s) 116, 386
Csp6I GTAC 2 cut(s) 442, 1004
CspAI ACCGGT 1 cut(s) 1537
CviAII CATG 8 cut(s) 85, 311, 581, 627, 775, 836, 1088, 1545
CviQI GTAC 2 cut(s) 442, 1004
DdeI CTNAG 6 cut(s) 12, 213, 390, 884, 1246, 1363
DpnI GATC 6 cut(s) 477, 683, 934, 1098, 1293, 1334
DpnII GATC 6 cut(s) 475, 681, 932, 1096, 1291, 1332
EaeI YGGCCR 1 cut(s) 852
Eco130I CCWWGG 2 cut(s) 574, 999
Eco24I GRGCYC 1 cut(s) 51
Eco32I GATATC 4 cut(s) 1106, 1261, 1354, 1401
Eco47I GGWCC 4 cut(s) 70, 255, 1024, 1346
Eco88I CYCGRG 1 cut(s) 60
Eco91I GGTNACC 1 cut(s) 590
EcoO109I RGGNCCY 2 cut(s) 70, 1024
EcoO65I GGTNACC 1 cut(s) 590
EcoRI GAATTC 2 cut(s) 1068, 1304
EcoRII CCWGG 3 cut(s) 721, 1434, 1471
EcoRV GATATC 4 cut(s) 1106, 1261, 1354, 1401
EcoT14I CCWWGG 2 cut(s) 574, 999
EcoT38I GRGCYC 1 cut(s) 51
ErhI CCWWGG 2 cut(s) 574, 999
Esp3I CGTCTC 1 cut(s) 369
FaeI CATG 8 cut(s) 88, 314, 584, 630, 778, 839, 1091, 1548
FatI CATG 8 cut(s) 84, 310, 580, 626, 774, 835, 1087, 1544
FauNDI CATATG 2 cut(s) 1297, 1594
Fnu4HI GCNGC 6 cut(s) 433, 668, 696, 962, 1461, 1568
FokI GGATG 4 cut(s) 903, 1131, 1148, 1460
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 6 cut(s) 433, 668, 696, 962, 1461, 1568
FspBI CTAG 1 cut(s) 827
GluI GCNGC 6 cut(s) 433, 668, 696, 962, 1461, 1568
GsuI CTGGAG 3 cut(s) 207, 260, 705
HaeIII GGCC 4 cut(s) 108, 199, 230, 854
HapII CCGG 2 cut(s) 271, 1538
HgaI GACGC 2 cut(s) 116, 386
Hin1II CATG 8 cut(s) 88, 314, 584, 630, 778, 839, 1091, 1548
HinfI GANTC 5 cut(s) 215, 280, 888, 1377, 1393
HpaII CCGG 2 cut(s) 271, 1538
HphI GGTGA 4 cut(s) 1298, 1325, 1402, 1552
Hpy166II GTNNAC 3 cut(s) 241, 444, 1346
Hpy188I TCNGA 5 cut(s) 252, 285, 688, 1324, 1398
Hpy188III TCNNGA 6 cut(s) 263, 277, 416, 1186, 1256, 1404
Hpy8I GTNNAC 3 cut(s) 241, 444, 1346
Hpy99I CGWCG 1 cut(s) 132
HpyAV CCTTC 5 cut(s) 61, 153, 1183, 1475, 1520
HpyCH4III ACNGT 4 cut(s) 509, 526, 804, 1008
HpyCH4IV ACGT 1 cut(s) 1252
HpyCH4V TGCA 9 cut(s) 27, 559, 626, 670, 744, 809, 957, 1301, 1370
HpyF10VI GCNNNNNNNGC 7 cut(s) 218, 227, 386, 565, 983, 1277, 1457
HpyF3I CTNAG 6 cut(s) 12, 213, 390, 884, 1246, 1363
HpySE526I ACGT 1 cut(s) 1252
Hsp92II CATG 8 cut(s) 88, 314, 584, 630, 778, 839, 1091, 1548
Kzo9I GATC 6 cut(s) 475, 681, 932, 1096, 1291, 1332
LmnI GCTCC 4 cut(s) 279, 457, 1324, 1651
Lsp1109I GCAGC 4 cut(s) 654, 707, 1447, 1554
LweI GCATC 5 cut(s) 292, 482, 856, 925, 1438
MaeI CTAG 1 cut(s) 827
MaeII ACGT 1 cut(s) 1252
MaeIII GTNAC 5 cut(s) 503, 590, 1075, 1313, 1540
MalI GATC 6 cut(s) 477, 683, 934, 1098, 1293, 1334
MbiI CCGCTC 2 cut(s) 260, 432
MboI GATC 6 cut(s) 475, 681, 932, 1096, 1291, 1332
MboII GAAGA 8 cut(s) 501, 524, 621, 1024, 1034, 1214, 1301, 1419
MfeI CAATTG 2 cut(s) 1158, 1272
MflI RGATCY 3 cut(s) 475, 932, 1291
MhlI GDGCHC 1 cut(s) 51
MlsI TGGCCA 1 cut(s) 854
MluCI AATT 9 cut(s) 22, 708, 768, 794, 1068, 1158, 1215, 1272, 1304
MluNI TGGCCA 1 cut(s) 854
MlyI GAGTC 2 cut(s) 224, 897
MmeI TCCRAC 3 cut(s) 625, 1177, 1561
Mox20I TGGCCA 1 cut(s) 854
MroXI GAANNNNTTC 1 cut(s) 525
MscI TGGCCA 1 cut(s) 854
MseI TTAA 4 cut(s) 153, 759, 1415, 1574
MslI CAYNNNNRTG 3 cut(s) 779, 1092, 1388
Msp20I TGGCCA 1 cut(s) 854
MspA1I CMGCKG 2 cut(s) 221, 1567
MspI CCGG 2 cut(s) 271, 1538
MspR9I CCNGG 4 cut(s) 271, 723, 1436, 1473
MunI CAATTG 2 cut(s) 1158, 1272
Mva1269I GAATGC 3 cut(s) 187, 214, 435
MvaI CCWGG 3 cut(s) 723, 1436, 1473
MvnI CGCG 1 cut(s) 981
MwoI GCNNNNNNNGC 7 cut(s) 218, 227, 386, 565, 983, 1277, 1457
NciI CCSGG 1 cut(s) 271
NdeI CATATG 2 cut(s) 1297, 1594
NdeII GATC 6 cut(s) 475, 681, 932, 1096, 1291, 1332
NlaIII CATG 8 cut(s) 88, 314, 584, 630, 778, 839, 1091, 1548
NlaIV GGNNCC 4 cut(s) 275, 334, 786, 1026
NmuCI GTSAC 2 cut(s) 1313, 1540
NspI RCATGY 2 cut(s) 630, 1091
NspV TTCGAA 2 cut(s) 529, 1524
OliI CACNNNNGTG 1 cut(s) 1388
PaeR7I CTCGAG 1 cut(s) 60
PctI GAATGC 3 cut(s) 187, 214, 435
PdmI GAANNNNTTC 1 cut(s) 525
PfeI GAWTC 3 cut(s) 280, 1377, 1393
PfoI TCCNGGA 1 cut(s) 1434
PinAI ACCGGT 1 cut(s) 1537
PkrI GCNGC 6 cut(s) 434, 669, 697, 963, 1462, 1569
PleI GAGTC 2 cut(s) 223, 896
PpsI GAGTC 2 cut(s) 223, 896
PpuMI RGGWCCY 2 cut(s) 70, 1024
PshBI ATTAAT 1 cut(s) 759
Psp5II RGGWCCY 2 cut(s) 70, 1024
Psp6I CCWGG 3 cut(s) 721, 1434, 1471
PspEI GGTNACC 1 cut(s) 590
PspGI CCWGG 3 cut(s) 721, 1434, 1471
PspN4I GGNNCC 4 cut(s) 275, 334, 786, 1026
PspPI GGNCC 7 cut(s) 70, 106, 197, 228, 255, 1024, 1346
PspPPI RGGWCCY 2 cut(s) 70, 1024
PspXI VCTCGAGB 1 cut(s) 60
PstI CTGCAG 1 cut(s) 672
PsuI RGATCY 3 cut(s) 475, 932, 1291
PvuII CAGCTG 1 cut(s) 1567
RsaI GTAC 2 cut(s) 443, 1005
RsaNI GTAC 2 cut(s) 442, 1004
RseI CAYNNNNRTG 3 cut(s) 779, 1092, 1388
SaqAI TTAA 4 cut(s) 153, 759, 1415, 1574
SatI GCNGC 6 cut(s) 433, 668, 696, 962, 1461, 1568
Sau3AI GATC 6 cut(s) 475, 681, 932, 1096, 1291, 1332
Sau96I GGNCC 7 cut(s) 70, 106, 197, 228, 255, 1024, 1346
SchI GAGTC 2 cut(s) 224, 897
ScrFI CCNGG 4 cut(s) 271, 723, 1436, 1473
SduI GDGCHC 1 cut(s) 51
SfaNI GCATC 5 cut(s) 292, 482, 856, 925, 1438
SfcI CTRYAG 1 cut(s) 668
Sfr274I CTCGAG 1 cut(s) 60
SfuI TTCGAA 2 cut(s) 529, 1524
SinI GGWCC 4 cut(s) 70, 255, 1024, 1346
SlaI CTCGAG 1 cut(s) 60
SmiMI CAYNNNNRTG 3 cut(s) 779, 1092, 1388
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
Sse9I AATT 9 cut(s) 22, 708, 768, 794, 1068, 1158, 1215, 1272, 1304
SsiI CCGC 6 cut(s) 221, 258, 305, 432, 962, 991
SspMI CTAG 1 cut(s) 827
StyD4I CCNGG 4 cut(s) 269, 721, 1434, 1471
StyI CCWWGG 2 cut(s) 574, 999
TaaI ACNGT 4 cut(s) 509, 526, 804, 1008
TaiI ACGT 1 cut(s) 1255
TaqI TCGA 5 cut(s) 61, 264, 529, 912, 1524
TaqII GACCGA 1 cut(s) 1389
TasI AATT 9 cut(s) 22, 708, 768, 794, 1068, 1158, 1215, 1272, 1304
TauI GCSGC 2 cut(s) 435, 964
TfiI GAWTC 3 cut(s) 280, 1377, 1393
Tru1I TTAA 4 cut(s) 153, 759, 1415, 1574
Tru9I TTAA 4 cut(s) 153, 759, 1415, 1574
TscAI CASTG 5 cut(s) 199, 514, 523, 1115, 1315
TseFI GTSAC 2 cut(s) 1313, 1540
TseI GCWGC 4 cut(s) 667, 695, 1460, 1567
Tsp45I GTSAC 2 cut(s) 1313, 1540
TspDTI ATGAA 3 cut(s) 299, 597, 1444
TspGWI ACGGA 1 cut(s) 429
TspRI CASTG 5 cut(s) 199, 514, 523, 1115, 1315
VpaK11BI GGWCC 4 cut(s) 70, 255, 1024, 1346
VspI ATTAAT 1 cut(s) 759
XapI RAATTY 4 cut(s) 708, 794, 1068, 1304
XceI RCATGY 2 cut(s) 630, 1091
XcmI CCANNNNNNNNNTGG 1 cut(s) 1193
XhoI CTCGAG 1 cut(s) 60
XmnI GAANNNNTTC 1 cut(s) 525
XspI CTAG 1 cut(s) 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.