Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001232

Physical Location & Seq

Genomic Coordinates Reverse (-)

28212769 .. 28213826

Gene Structure 1058 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG265200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCATGGGGAGATACCAATATCTTTGCTGGACAAAGTTGGTATAAGCTGCATAGGGATCTGGCACGCGAAGCTGTTCGCAAGTCATTGGTTCTGTTGAAGAATGGAAAGGAGCCAAGCAAACCTTTTCTTCCATTAGATAGAAAAGCCAAAAGAACACTGGTTACCGGAACGCATGCTGATGATCTTGGATATCAGTGTGGAGGATGGACAGCTACTAAGGCTGGTTTAAGTGGCAGGTTCACCATTGGCACAACCATCTTGGAAGCTATCAAGAAGGCAGTTGGAGAGGAAACAGAAATTATTTATGAGCAACTGCCATCAACGGATACCCTAGCACGTAAAGATATATCTTTTGCAGTTGTTGCTGTTGGTGAAGGTTCATATGCCGAATGCAAGGGCAACAACTTGGAGCTTGTGGTTCCTTTTAATGGACCTGATGTAATAAGCTCAGTTGCTGACAGAATCCCCACATTGGTGATTCTGATATCTAGAAGACCCTTAACTGTAGAGCCAAGTCTCTTGGAAAAGATGCATGTTCTCGTTGCTTCTTGGTTGCCTGGTAGTGAAGGAGAGATGTTATCTTTGGAGATTATAACTTTGAGGGCAAGCTACGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

206

Amino Acids

22.5

Weight (kDa)

6.84

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3_C	PF01915	30 - 195	4.6e-19	Glycosyl hydrolase family 3 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47000 AT3G47000 AT3G47000 AT3G47010 AT3G47010 AT3G47010 AT3G47040 AT3G47040 AT3G47040 AT3G47050
fragaria_vesca	FvH4_3g38160 FvH4_3g38160 FvH4_4g11940
malus_domestica	MD02G1242000.v1.1 MD02G1242100.v1.1 MD02G1242200.v1.1 MD02G1242300.v1.1 MD11G1080700.v1.1
prunus_persica	Prupe.2G092300_v2.0.a1 Prupe.2G092300_v2.0.a1 Prupe.2G092300_v2.0.a1 Prupe.2G092600_v2.0.a1 Prupe.2G092900_v2.0.a1 Prupe.2G092900_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1
pyrus_communis	pycom02g20900 pycom11g06800 pycom11g06860
rosa_chinensis	RchiOBHm_Chr5g0068591 RchiOBHm_Chr6g0246121
rosa_laevigata	RLG00000035983 RLG00000036820 RLG00000036839
rosa_multiflora	Rmu_sc0004721.1_g000003
rosa_roxburghii	Rroxscaffold_1G00003560 Rroxscaffold_1G00012260 Rroxscaffold_3G00247860 Rroxscaffold_7G00214870
rosa_rugosa	Rorug05G0391700 Rorug05G0464600 Rorug05G0465200 Rorug05G0465800
rosa_samantha	Rh5AG449400 Rh5BG467600 Rh5DG481000 Rh5DG551200 Rh5DG552100 Rh7AG258000 Rh7CG274700 Rh7DG265200
rosa_wichuraiana	Rw5G041960 Rw5G048090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	596
Acc36I	ACCTGC	1 cut(s)	228
AccII	CGCG	1 cut(s)	69
AclWI	GGATC	1 cut(s)	66
AfiI	CCNNNNNNNGG	2 cut(s)	431, 475
AflIII	ACRYGT	1 cut(s)	615
AgsI	TTSAA	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	559
AleI	CACNNNNGTG	1 cut(s)	476
AluBI	AGCT	7 cut(s)	49, 74, 215, 269, 415, 450, 612
AluI	AGCT	7 cut(s)	49, 74, 215, 269, 415, 450, 612
Alw26I	GTCTC	1 cut(s)	524
AlwI	GGATC	1 cut(s)	66
AlwNI	CAGNNNCTG	1 cut(s)	458
ApeKI	GCWGC	1 cut(s)	49
Asp700I	GAANNNNTTC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	434
AsuHPI	GGTGA	3 cut(s)	235, 386, 490
AvaII	GGWCC	1 cut(s)	434
BbsI	GAAGAC	1 cut(s)	502
BbvI	GCAGC	1 cut(s)	36
BccI	CCATC	3 cut(s)	201, 266, 328
BciT130I	CCWGG	1 cut(s)	561
BciVI	GTATCC	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	524
BfaI	CTAG	2 cut(s)	335, 492
BfmI	CTRYAG	1 cut(s)	507
BfuAI	ACCTGC	1 cut(s)	228
BfuI	GTATCC	1 cut(s)	322
BisI	GCNGC	1 cut(s)	50
BlsI	GCNGC	1 cut(s)	51
Bme1390I	CCNGG	1 cut(s)	561
Bme18I	GGWCC	1 cut(s)	434
BmgT120I	GGNCC	1 cut(s)	434
BmiI	GGNNCC	2 cut(s)	114, 423
BmrFI	CCNGG	1 cut(s)	561
BmsI	GCATC	1 cut(s)	522
BpiI	GAAGAC	1 cut(s)	502
BsaAI	YACGTR	2 cut(s)	341, 616
BsaWI	WCCGGW	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	2 cut(s)	431, 475
Bse1I	ACTGG	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	561
BseGI	GGATG	1 cut(s)	212
BseLI	CCNNNNNNNGG	2 cut(s)	431, 475
BseMII	CTCAG	1 cut(s)	465
BseNI	ACTGG	1 cut(s)	165
BseXI	GCAGC	1 cut(s)	36
Bsh1236I	CGCG	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	168
BslI	CCNNNNNNNGG	2 cut(s)	431, 475
BsmAI	GTCTC	1 cut(s)	524
BsmI	GAATGC	1 cut(s)	398
Bsp143I	GATC	2 cut(s)	58, 184
BspCNI	CTCAG	1 cut(s)	464
BspFNI	CGCG	1 cut(s)	69
BspLI	GGNNCC	2 cut(s)	114, 423
BspMI	ACCTGC	1 cut(s)	228
BspPI	GGATC	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	165
BssMI	GATC	2 cut(s)	58, 184
Bst2UI	CCWGG	1 cut(s)	561
Bst4CI	ACNGT	1 cut(s)	508
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstBAI	YACGTR	2 cut(s)	341, 616
BstC8I	GCNNGC	3 cut(s)	67, 177, 610
BstDEI	CTNAG	2 cut(s)	219, 451
BstEII	GGTNACC	1 cut(s)	163
BstF5I	GGATG	1 cut(s)	212
BstFNI	CGCG	1 cut(s)	69
BstKTI	GATC	2 cut(s)	61, 187
BstMAI	GTCTC	1 cut(s)	524
BstMBI	GATC	2 cut(s)	58, 184
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 221, 365
BstNI	CCWGG	1 cut(s)	561
BstNSI	RCATGY	2 cut(s)	179, 539
BstPI	GGTNACC	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	559
BstSFI	CTRYAG	1 cut(s)	507
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	36
BstV2I	GAAGAC	1 cut(s)	502
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
BsuI	GTATCC	1 cut(s)	322
BtsCI	GGATG	1 cut(s)	212
BtsIMutI	CAGTG	2 cut(s)	158, 203
BveI	ACCTGC	1 cut(s)	228
Cac8I	GCNNGC	3 cut(s)	67, 177, 610
CaiI	CAGNNNCTG	1 cut(s)	458
Cfr13I	GGNCC	1 cut(s)	434
CviAII	CATG	3 cut(s)	6, 176, 536
DdeI	CTNAG	2 cut(s)	219, 451
DpnI	GATC	2 cut(s)	60, 186
DpnII	GATC	2 cut(s)	58, 184
Eco32I	GATATC	2 cut(s)	194, 489
Eco47I	GGWCC	1 cut(s)	434
Eco91I	GGTNACC	1 cut(s)	163
EcoO65I	GGTNACC	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	559
EcoRV	GATATC	2 cut(s)	194, 489
EcoT22I	ATGCAT	1 cut(s)	537
FaeI	CATG	3 cut(s)	9, 179, 539
FalI	AAGNNNNNCTT	2 cut(s)	109, 141
FatI	CATG	3 cut(s)	5, 175, 535
FauNDI	CATATG	1 cut(s)	385
Fnu4HI	GCNGC	1 cut(s)	50
FokI	GGATG	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	50
FspBI	CTAG	2 cut(s)	335, 492
GluI	GCNGC	1 cut(s)	50
HapII	CCGG	1 cut(s)	168
Hin1II	CATG	3 cut(s)	9, 179, 539
HinfI	GANTC	2 cut(s)	465, 481
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	3 cut(s)	235, 386, 490
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188I	TCNGA	1 cut(s)	486
Hpy188III	TCNNGA	2 cut(s)	274, 492
Hpy8I	GTNNAC	1 cut(s)	243
HpyAV	CCTTC	3 cut(s)	271, 371, 563
HpyCH4III	ACNGT	1 cut(s)	508
HpyCH4IV	ACGT	2 cut(s)	340, 615
HpyCH4V	TGCA	4 cut(s)	52, 359, 396, 535
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 221, 365
HpyF3I	CTNAG	2 cut(s)	219, 451
HpySE526I	ACGT	2 cut(s)	340, 615
Hsp92II	CATG	3 cut(s)	9, 179, 539
Kzo9I	GATC	2 cut(s)	58, 184
LmnI	GCTCC	2 cut(s)	112, 412
LpnPI	CCDG	9 cut(s)	15, 47, 146, 181, 210, 223, 450, 546, 573
Lsp1109I	GCAGC	1 cut(s)	36
LweI	GCATC	1 cut(s)	522
MaeI	CTAG	2 cut(s)	335, 492
MaeII	ACGT	2 cut(s)	340, 615
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	2 cut(s)	60, 186
MboI	GATC	2 cut(s)	58, 184
MboII	GAAGA	3 cut(s)	112, 122, 507
MflI	RGATCY	1 cut(s)	58
MluCI	AATT	1 cut(s)	300
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	3 cut(s)	197, 283, 597
Mph1103I	ATGCAT	1 cut(s)	537
MroXI	GAANNNNTTC	1 cut(s)	75
MseI	TTAA	3 cut(s)	230, 429, 503
MslI	CAYNNNNRTG	2 cut(s)	180, 476
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	561
Mva1269I	GAATGC	1 cut(s)	398
MvaI	CCWGG	1 cut(s)	561
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	3 cut(s)	71, 221, 365
NdeI	CATATG	1 cut(s)	385
NdeII	GATC	2 cut(s)	58, 184
NlaIII	CATG	3 cut(s)	9, 179, 539
NlaIV	GGNNCC	2 cut(s)	114, 423
NsiI	ATGCAT	1 cut(s)	537
NspI	RCATGY	2 cut(s)	179, 539
OliI	CACNNNNGTG	1 cut(s)	476
PaeI	GCATGC	1 cut(s)	179
PctI	GAATGC	1 cut(s)	398
PdmI	GAANNNNTTC	1 cut(s)	75
PfeI	GAWTC	2 cut(s)	465, 481
PkrI	GCNGC	1 cut(s)	51
Ppu21I	YACGTR	2 cut(s)	341, 616
PsiI	TTATAA	1 cut(s)	596
Psp6I	CCWGG	1 cut(s)	559
PspEI	GGTNACC	1 cut(s)	163
PspGI	CCWGG	1 cut(s)	559
PspN4I	GGNNCC	2 cut(s)	114, 423
PspPI	GGNCC	1 cut(s)	434
PsrI	GAACNNNNNNTAC	2 cut(s)	148, 180
PstNI	CAGNNNCTG	1 cut(s)	458
PsuI	RGATCY	1 cut(s)	58
RseI	CAYNNNNRTG	2 cut(s)	180, 476
SaqAI	TTAA	3 cut(s)	230, 429, 503
SatI	GCNGC	1 cut(s)	50
Sau3AI	GATC	2 cut(s)	58, 184
Sau96I	GGNCC	1 cut(s)	434
ScrFI	CCNGG	1 cut(s)	561
SfaNI	GCATC	1 cut(s)	522
SfcI	CTRYAG	1 cut(s)	507
SinI	GGWCC	1 cut(s)	434
SmiMI	CAYNNNNRTG	2 cut(s)	180, 476
SphI	GCATGC	1 cut(s)	179
Sse9I	AATT	1 cut(s)	300
SspMI	CTAG	2 cut(s)	335, 492
StyD4I	CCNGG	1 cut(s)	559
TaaI	ACNGT	1 cut(s)	508
TaiI	ACGT	2 cut(s)	343, 618
TasI	AATT	1 cut(s)	300
TfiI	GAWTC	2 cut(s)	465, 481
Tru1I	TTAA	3 cut(s)	230, 429, 503
Tru9I	TTAA	3 cut(s)	230, 429, 503
TscAI	CASTG	2 cut(s)	165, 203
TseI	GCWGC	1 cut(s)	49
TspDTI	ATGAA	1 cut(s)	372
TspGWI	ACGGA	1 cut(s)	341
TspRI	CASTG	2 cut(s)	165, 203
VpaK11BI	GGWCC	1 cut(s)	434
XbaI	TCTAGA	1 cut(s)	491
XceI	RCATGY	2 cut(s)	179, 539
XcmI	CCANNNNNNNNNTGG	1 cut(s)	157
XmnI	GAANNNNTTC	1 cut(s)	75
XspI	CTAG	2 cut(s)	335, 492
Zsp2I	ATGCAT	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.