Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001232

Physical Location & Seq

Genomic Coordinates Forward (+)

5237396 .. 5238522

Gene Structure 1127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g06860.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTTGAAGAATGGAAAGGACCCAAGCAAACCTATTCTCCCATTAGATAGAAAAGTAAAAAGAATACTTGTTACTGGAACACATTCCGATGATCTTGGATATCAGTGTGGAGGATGGACAGCAACTTGGGATGGTCACAGTGGCAGGATCACAATTGGTATGAAATGCACAACCGTCTTGGAAGCTATCGAGAAGGCCGTTGGAGATGATACAGAAATTATTTATGAGCTATGTCCGTCGACAGAGACCTTAGCACGCCAAGATATCTCTCTTGCAGTCGTAGCTGTTGGTGAAGGTCCATATGCGGAATTCAAGGGTGACAATTCAACGCTTGTGATCCCCTTTAATGGAGCTGATGTTATAAGCTCAGTTGCTGACAGATTCCCTACGCTGGTGATTCTGATATCTGGAAGGCCCTTAACTTTAGAGCCCCAACTCTTGGAAAAGATGGATGCTCTTGTCGCTACTTGGTTGCCTGGTAGCGAAGGAGAGGGAATTACAGATGTTATCTTCGGAGATTATGACTTCGAGGGCAGACTACCAGTTTCATGGTTTAAAAGTGTTGAACAGCTTCCCATGAACGCCAGAGACAACTCATATGACCCTTTATATCCTCTTGGCTTTGGGTTGACTTACAATAAGGGAAGGTCCTTGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

220

Amino Acids

23.92

Weight (kDa)

4.75

Isoelectric Point (pI)

31.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47000 AT3G47000 AT3G47000 AT3G47010 AT3G47010 AT3G47010 AT3G47040 AT3G47040 AT3G47040 AT3G47050
fragaria_vesca	FvH4_3g38160 FvH4_3g38160 FvH4_4g11940
malus_domestica	MD02G1242000.v1.1 MD02G1242100.v1.1 MD02G1242200.v1.1 MD02G1242300.v1.1 MD11G1080700.v1.1
prunus_persica	Prupe.2G092300_v2.0.a1 Prupe.2G092300_v2.0.a1 Prupe.2G092300_v2.0.a1 Prupe.2G092600_v2.0.a1 Prupe.2G092900_v2.0.a1 Prupe.2G092900_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1 Prupe.6G061000_v2.0.a1
pyrus_communis	pycom02g20900 pycom11g06800 pycom11g06860
rosa_chinensis	RchiOBHm_Chr5g0068591 RchiOBHm_Chr6g0246121
rosa_laevigata	RLG00000035983 RLG00000036820 RLG00000036839
rosa_multiflora	Rmu_sc0004721.1_g000003
rosa_roxburghii	Rroxscaffold_1G00003560 Rroxscaffold_1G00012260 Rroxscaffold_3G00247860 Rroxscaffold_7G00214870
rosa_rugosa	Rorug05G0391700 Rorug05G0464600 Rorug05G0465200 Rorug05G0465800
rosa_samantha	Rh5AG449400 Rh5BG467600 Rh5DG481000 Rh5DG551200 Rh5DG552100 Rh7AG258000 Rh7CG274700 Rh7DG265200
rosa_wichuraiana	Rw5G041960 Rw5G048090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	362
AccB7I	CCANNNNNTGG	1 cut(s)	439
AccI	GTMKAC	1 cut(s)	239
AciI	CCGC	1 cut(s)	305
AclWI	GGATC	2 cut(s)	155, 331
AcsI	RAATTY	1 cut(s)	308
AfiI	CCNNNNNNNGG	3 cut(s)	347, 391, 439
AgsI	TTSAA	4 cut(s)	7, 313, 327, 566
AjnI	CCWGG	1 cut(s)	475
AluBI	AGCT	6 cut(s)	185, 229, 284, 353, 366, 571
AluI	AGCT	6 cut(s)	185, 229, 284, 353, 366, 571
Alw26I	GTCTC	2 cut(s)	239, 582
AlwI	GGATC	2 cut(s)	155, 331
AlwNI	CAGNNNCTG	1 cut(s)	374
AoxI	GGCC	2 cut(s)	195, 413
ApoI	RAATTY	1 cut(s)	308
Asp700I	GAANNNNTTC	2 cut(s)	82, 570
AspS9I	GGNCC	4 cut(s)	19, 296, 414, 648
AsuHPI	GGTGA	3 cut(s)	302, 329, 406
AvaII	GGWCC	3 cut(s)	19, 296, 648
BanII	GRGCYC	1 cut(s)	432
BccI	CCATC	3 cut(s)	108, 125, 442
BceAI	ACGGC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	477
BcoDI	GTCTC	2 cut(s)	239, 582
Bme1390I	CCNGG	1 cut(s)	477
Bme18I	GGWCC	3 cut(s)	19, 296, 648
BmgT120I	GGNCC	4 cut(s)	19, 296, 414, 648
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	477
BmsI	GCATC	1 cut(s)	442
Bpu10I	CCTNAGC	1 cut(s)	250
BsaI	GGTCTC	1 cut(s)	239
BsaXI	ACNNNNNCTCC	4 cut(s)	21, 51, 342, 372
Bsc4I	CCNNNNNNNGG	3 cut(s)	347, 391, 439
Bse1I	ACTGG	2 cut(s)	79, 542
BseBI	CCWGG	1 cut(s)	477
BseGI	GGATG	3 cut(s)	119, 136, 457
BseLI	CCNNNNNNNGG	3 cut(s)	347, 391, 439
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	2 cut(s)	79, 542
BshFI	GGCC	2 cut(s)	197, 415
BslI	CCNNNNNNNGG	3 cut(s)	347, 391, 439
BsmAI	GTCTC	2 cut(s)	239, 582
BsnI	GGCC	2 cut(s)	197, 415
Bso31I	GGTCTC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp143I	GATC	3 cut(s)	91, 147, 336
BspACI	CCGC	1 cut(s)	305
BspANI	GGCC	2 cut(s)	197, 415
BspCNI	CTCAG	1 cut(s)	380
BspLI	GGNNCC	1 cut(s)	21
BspPI	GGATC	2 cut(s)	155, 331
BspTNI	GGTCTC	1 cut(s)	239
BsrI	ACTGG	2 cut(s)	79, 542
BssMI	GATC	3 cut(s)	91, 147, 336
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	2 cut(s)	140, 175
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	2 cut(s)	250, 367
BstF5I	GGATG	3 cut(s)	119, 136, 457
BstKTI	GATC	3 cut(s)	94, 150, 339
BstMAI	GTCTC	2 cut(s)	239, 582
BstMBI	GATC	3 cut(s)	91, 147, 336
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 461
BstNI	CCWGG	1 cut(s)	477
BstSCI	CCNGG	1 cut(s)	475
BstXI	CCANNNNNNTGG	1 cut(s)	549
BsuRI	GGCC	2 cut(s)	197, 415
BtsCI	GGATG	3 cut(s)	119, 136, 457
BtsIMutI	CAGTG	2 cut(s)	110, 145
Cac8I	GCNNGC	1 cut(s)	256
CaiI	CAGNNNCTG	1 cut(s)	374
Cfr13I	GGNCC	4 cut(s)	19, 296, 414, 648
CviAII	CATG	2 cut(s)	549, 577
DdeI	CTNAG	2 cut(s)	250, 367
DpnI	GATC	3 cut(s)	93, 149, 338
DpnII	GATC	3 cut(s)	91, 147, 336
DraI	TTTAAA	1 cut(s)	556
Eco24I	GRGCYC	1 cut(s)	432
Eco31I	GGTCTC	1 cut(s)	239
Eco32I	GATATC	3 cut(s)	101, 265, 405
Eco47I	GGWCC	3 cut(s)	19, 296, 648
EcoO109I	RGGNCCY	3 cut(s)	19, 414, 648
EcoRI	GAATTC	1 cut(s)	308
EcoRII	CCWGG	1 cut(s)	475
EcoRV	GATATC	3 cut(s)	101, 265, 405
EcoT38I	GRGCYC	1 cut(s)	432
FaeI	CATG	2 cut(s)	552, 580
FatI	CATG	2 cut(s)	548, 576
FauNDI	CATATG	2 cut(s)	301, 598
FblI	GTMKAC	1 cut(s)	239
FokI	GGATG	3 cut(s)	126, 143, 464
FriOI	GRGCYC	1 cut(s)	432
HaeIII	GGCC	2 cut(s)	197, 415
Hin1II	CATG	2 cut(s)	552, 580
HincII	GTYRAC	2 cut(s)	240, 630
HindII	GTYRAC	2 cut(s)	240, 630
HinfI	GANTC	2 cut(s)	381, 397
HphI	GGTGA	3 cut(s)	302, 329, 406
Hpy166II	GTNNAC	2 cut(s)	240, 630
Hpy188I	TCNGA	3 cut(s)	88, 402, 515
Hpy188III	TCNNGA	2 cut(s)	190, 408
Hpy8I	GTNNAC	2 cut(s)	240, 630
Hpy99I	CGWCG	1 cut(s)	241
HpyAV	CCTTC	5 cut(s)	187, 287, 405, 479, 639
HpyCH4III	ACNGT	2 cut(s)	140, 175
HpyCH4V	TGCA	3 cut(s)	168, 275, 655
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 461
HpyF3I	CTNAG	2 cut(s)	250, 367
Hsp92II	CATG	2 cut(s)	552, 580
Kzo9I	GATC	3 cut(s)	91, 147, 336
LmnI	GCTCC	1 cut(s)	350
LpnPI	CCDG	8 cut(s)	60, 130, 377, 393, 462, 489, 555, 598
LweI	GCATC	1 cut(s)	442
MaeIII	GTNAC	3 cut(s)	70, 134, 317
MalI	GATC	3 cut(s)	93, 149, 338
MboI	GATC	3 cut(s)	91, 147, 336
MboII	GAAGA	2 cut(s)	19, 502
MfeI	CAATTG	1 cut(s)	153
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	5 cut(s)	153, 216, 308, 322, 495
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	4 cut(s)	104, 484, 523, 624
MroXI	GAANNNNTTC	2 cut(s)	82, 570
MseI	TTAA	3 cut(s)	345, 419, 555
MslI	CAYNNNNRTG	1 cut(s)	87
MspR9I	CCNGG	1 cut(s)	477
MunI	CAATTG	1 cut(s)	153
MvaI	CCWGG	1 cut(s)	477
MwoI	GCNNNNNNNGC	2 cut(s)	281, 461
NdeI	CATATG	2 cut(s)	301, 598
NdeII	GATC	3 cut(s)	91, 147, 336
NlaIII	CATG	2 cut(s)	552, 580
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	2 cut(s)	134, 317
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PdmI	GAANNNNTTC	2 cut(s)	82, 570
PfeI	GAWTC	2 cut(s)	381, 397
PflMI	CCANNNNNTGG	1 cut(s)	439
PpuMI	RGGWCCY	2 cut(s)	19, 648
PsiI	TTATAA	1 cut(s)	362
Psp5II	RGGWCCY	2 cut(s)	19, 648
Psp6I	CCWGG	1 cut(s)	475
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	4 cut(s)	19, 296, 414, 648
PspPPI	RGGWCCY	2 cut(s)	19, 648
PstNI	CAGNNNCTG	1 cut(s)	374
RseI	CAYNNNNRTG	1 cut(s)	87
SalI	GTCGAC	1 cut(s)	238
SaqAI	TTAA	3 cut(s)	345, 419, 555
Sau3AI	GATC	3 cut(s)	91, 147, 336
Sau96I	GGNCC	4 cut(s)	19, 296, 414, 648
ScrFI	CCNGG	1 cut(s)	477
SduI	GDGCHC	1 cut(s)	432
SfaNI	GCATC	1 cut(s)	442
SinI	GGWCC	3 cut(s)	19, 296, 648
SmiMI	CAYNNNNRTG	1 cut(s)	87
Sse9I	AATT	5 cut(s)	153, 216, 308, 322, 495
SsiI	CCGC	1 cut(s)	305
StyD4I	CCNGG	1 cut(s)	475
TaaI	ACNGT	2 cut(s)	140, 175
TaqI	TCGA	3 cut(s)	189, 239, 528
TasI	AATT	5 cut(s)	153, 216, 308, 322, 495
TfiI	GAWTC	2 cut(s)	381, 397
Tru1I	TTAA	3 cut(s)	345, 419, 555
Tru9I	TTAA	3 cut(s)	345, 419, 555
TscAI	CASTG	2 cut(s)	110, 145
TseFI	GTSAC	2 cut(s)	134, 317
Tsp45I	GTSAC	2 cut(s)	134, 317
TspDTI	ATGAA	3 cut(s)	176, 537, 593
TspGWI	ACGGA	1 cut(s)	225
TspRI	CASTG	2 cut(s)	110, 145
Van91I	CCANNNNNTGG	1 cut(s)	439
VpaK11BI	GGWCC	3 cut(s)	19, 296, 648
XapI	RAATTY	1 cut(s)	308
XmiI	GTMKAC	1 cut(s)	239
XmnI	GAANNNNTTC	2 cut(s)	82, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.