pumilio homolog
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PUF | PF00806 | 465 - 499 | 1.9e-09 | Pumilio-family RNA binding repeat |
| PUF | PF00806 | 501 - 534 | 6.5e-12 | Pumilio-family RNA binding repeat |
| PUF | PF00806 | 613 - 647 | 9.5e-16 | Pumilio-family RNA binding repeat |
| PUF | PF00806 | 686 - 719 | 5.2e-07 | Pumilio-family RNA binding repeat |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 424 |
| Acc65I | GGTACC | 1 cut(s) | 934 |
| AccB1I | GGYRCC | 3 cut(s) | 918, 934, 1457 |
| AccII | CGCG | 2 cut(s) | 113, 2167 |
| AciI | CCGC | 5 cut(s) | 563, 847, 1429, 1861, 2165 |
| AclWI | GGATC | 3 cut(s) | 1581, 1961, 2181 |
| AcoI | YGGCCR | 1 cut(s) | 385 |
| AcsI | RAATTY | 5 cut(s) | 35, 213, 592, 1395, 1587 |
| AcuI | CTGAAG | 3 cut(s) | 1367, 1473, 1991 |
| AcvI | CACGTG | 1 cut(s) | 903 |
| AcyI | GRCGYC | 1 cut(s) | 1458 |
| AfaI | GTAC | 4 cut(s) | 824, 936, 1034, 2028 |
| AfeI | AGCGCT | 1 cut(s) | 1778 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 147, 662, 931, 2047 |
| AflII | CTTAAG | 2 cut(s) | 554, 1301 |
| AflIII | ACRYGT | 2 cut(s) | 111, 902 |
| AjnI | CCWGG | 5 cut(s) | 601, 661, 998, 1612, 1726 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 55, 87 |
| Alw21I | GWGCWC | 1 cut(s) | 1515 |
| Alw26I | GTCTC | 1 cut(s) | 126 |
| AlwI | GGATC | 3 cut(s) | 1581, 1961, 2181 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 865, 1552, 2152 |
| Ama87I | CYCGRG | 2 cut(s) | 913, 1653 |
| Aor51HI | AGCGCT | 1 cut(s) | 1778 |
| AoxI | GGCC | 3 cut(s) | 149, 385, 511 |
| ApoI | RAATTY | 5 cut(s) | 35, 213, 592, 1395, 1587 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 98, 130 |
| AseI | ATTAAT | 1 cut(s) | 1925 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1447 |
| Asp718I | GGTACC | 1 cut(s) | 934 |
| AspLEI | GCGC | 3 cut(s) | 1460, 1779, 2169 |
| AspS9I | GGNCC | 3 cut(s) | 149, 1004, 1414 |
| AsuHPI | GGTGA | 2 cut(s) | 65, 216 |
| AvaI | CYCGRG | 2 cut(s) | 913, 1653 |
| AvaII | GGWCC | 2 cut(s) | 1004, 1414 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 420, 453 |
| BalI | TGGCCA | 1 cut(s) | 387 |
| BanI | GGYRCC | 3 cut(s) | 918, 934, 1457 |
| BanII | GRGCYC | 1 cut(s) | 1515 |
| BbrPI | CACGTG | 1 cut(s) | 903 |
| BbsI | GAAGAC | 1 cut(s) | 1355 |
| Bbv12I | GWGCWC | 1 cut(s) | 1515 |
| BccI | CCATC | 3 cut(s) | 134, 182, 302 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1634, 1668, 1911, 1945 |
| BciT130I | CCWGG | 5 cut(s) | 603, 663, 1000, 1614, 1728 |
| BciVI | GTATCC | 1 cut(s) | 421 |
| BclI | TGATCA | 4 cut(s) | 268, 688, 841, 1498 |
| BcoDI | GTCTC | 1 cut(s) | 126 |
| BfaI | CTAG | 3 cut(s) | 23, 614, 1287 |
| BfmI | CTRYAG | 3 cut(s) | 621, 668, 799 |
| BfoI | RGCGCY | 2 cut(s) | 1461, 1780 |
| BfrI | CTTAAG | 2 cut(s) | 554, 1301 |
| BfuAI | ACCTGC | 1 cut(s) | 424 |
| BfuI | GTATCC | 1 cut(s) | 421 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1188 |
| BlpI | GCTNAGC | 1 cut(s) | 858 |
| Bme1390I | CCNGG | 5 cut(s) | 603, 663, 1000, 1614, 1728 |
| Bme18I | GGWCC | 2 cut(s) | 1004, 1414 |
| BmeT110I | CYCGRG | 2 cut(s) | 913, 1653 |
| BmgT120I | GGNCC | 3 cut(s) | 149, 1004, 1414 |
| BmiI | GGNNCC | 6 cut(s) | 150, 920, 936, 996, 1005, 1459 |
| BmrFI | CCNGG | 5 cut(s) | 603, 663, 1000, 1614, 1728 |
| BmsI | GCATC | 8 cut(s) | 487, 703, 795, 871, 1235, 1306, 1894, 2256 |
| BpiI | GAAGAC | 1 cut(s) | 1355 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1410 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 858 |
| BpuEI | CTTGAG | 1 cut(s) | 1947 |
| BsaAI | YACGTR | 1 cut(s) | 903 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1572 |
| BsaHI | GRCGYC | 1 cut(s) | 1458 |
| BsaJI | CCNNGG | 9 cut(s) | 914, 998, 999, 1374, 1613, 1704, 1727, 1864, 2015 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 147, 662, 931, 2047 |
| Bse1I | ACTGG | 2 cut(s) | 1246, 2041 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1572 |
| BseBI | CCWGG | 5 cut(s) | 603, 663, 1000, 1614, 1728 |
| BseDI | CCNNGG | 9 cut(s) | 914, 998, 999, 1374, 1613, 1704, 1727, 1864, 2015 |
| BseGI | GGATG | 6 cut(s) | 810, 1122, 1250, 1384, 1909, 2271 |
| BseJI | GATNNNNATC | 1 cut(s) | 1572 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 147, 662, 931, 2047 |
| BseMII | CTCAG | 7 cut(s) | 290, 321, 872, 1080, 1343, 1373, 1479 |
| BseNI | ACTGG | 2 cut(s) | 1246, 2041 |
| BseRI | GAGGAG | 1 cut(s) | 803 |
| BsgI | GTGCAG | 3 cut(s) | 270, 333, 2093 |
| Bsh1236I | CGCG | 2 cut(s) | 113, 2167 |
| BshFI | GGCC | 3 cut(s) | 151, 387, 513 |
| BshNI | GGYRCC | 3 cut(s) | 918, 934, 1457 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1515 |
| BsiHKCI | CYCGRG | 2 cut(s) | 913, 1653 |
| BsiSI | CCGG | 1 cut(s) | 1216 |
| BslFI | GGGAC | 1 cut(s) | 1663 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 147, 662, 931, 2047 |
| BsmAI | GTCTC | 1 cut(s) | 126 |
| BsmFI | GGGAC | 1 cut(s) | 1663 |
| BsnI | GGCC | 3 cut(s) | 151, 387, 513 |
| BsoBI | CYCGRG | 2 cut(s) | 913, 1653 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1515 |
| Bsp1407I | TGTACA | 1 cut(s) | 2026 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 858 |
| Bsp19I | CCATGG | 3 cut(s) | 1374, 1704, 1864 |
| BspACI | CCGC | 5 cut(s) | 563, 847, 1429, 1861, 2165 |
| BspANI | GGCC | 3 cut(s) | 151, 387, 513 |
| BspCNI | CTCAG | 7 cut(s) | 291, 322, 871, 1081, 1342, 1372, 1480 |
| BspFNI | CGCG | 2 cut(s) | 113, 2167 |
| BspHI | TCATGA | 2 cut(s) | 838, 1515 |
| BspLI | GGNNCC | 6 cut(s) | 150, 920, 936, 996, 1005, 1459 |
| BspMAI | CTGCAG | 2 cut(s) | 625, 672 |
| BspMI | ACCTGC | 1 cut(s) | 424 |
| BspPI | GGATC | 3 cut(s) | 1581, 1961, 2181 |
| BspQI | GCTCTTC | 2 cut(s) | 543, 2118 |
| BspT107I | GGYRCC | 3 cut(s) | 918, 934, 1457 |
| BspTI | CTTAAG | 2 cut(s) | 554, 1301 |
| BsrGI | TGTACA | 1 cut(s) | 2026 |
| BsrI | ACTGG | 2 cut(s) | 1246, 2041 |
| BssECI | CCNNGG | 9 cut(s) | 914, 998, 999, 1374, 1613, 1704, 1727, 1864, 2015 |
| BssNI | GRCGYC | 1 cut(s) | 1458 |
| BssT1I | CCWWGG | 3 cut(s) | 1374, 1704, 1864 |
| Bst2UI | CCWGG | 5 cut(s) | 603, 663, 1000, 1614, 1728 |
| Bst4CI | ACNGT | 4 cut(s) | 1354, 1788, 1841, 2026 |
| Bst6I | CTCTTC | 3 cut(s) | 543, 780, 2118 |
| BstACI | GRCGYC | 1 cut(s) | 1458 |
| BstAFI | CTTAAG | 2 cut(s) | 554, 1301 |
| BstAUI | TGTACA | 1 cut(s) | 2026 |
| BstBAI | YACGTR | 1 cut(s) | 903 |
| BstC8I | GCNNGC | 7 cut(s) | 511, 567, 657, 892, 896, 1221, 1851 |
| BstDEI | CTNAG | 9 cut(s) | 299, 330, 858, 1089, 1329, 1359, 1410, 1488, 2222 |
| BstDSI | CCRYGG | 4 cut(s) | 1374, 1704, 1864, 2015 |
| BstF5I | GGATG | 6 cut(s) | 810, 1122, 1250, 1384, 1909, 2271 |
| BstFNI | CGCG | 2 cut(s) | 113, 2167 |
| BstH2I | RGCGCY | 2 cut(s) | 1461, 1780 |
| BstHHI | GCGC | 3 cut(s) | 1460, 1779, 2169 |
| BstMAI | GTCTC | 1 cut(s) | 126 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 506, 1188 |
| BstNI | CCWGG | 5 cut(s) | 603, 663, 1000, 1614, 1728 |
| BstNSI | RCATGY | 1 cut(s) | 1223 |
| BstSCI | CCNGG | 5 cut(s) | 601, 661, 998, 1612, 1726 |
| BstSFI | CTRYAG | 3 cut(s) | 621, 668, 799 |
| BstUI | CGCG | 2 cut(s) | 113, 2167 |
| BstV2I | GAAGAC | 1 cut(s) | 1355 |
| BstX2I | RGATCY | 1 cut(s) | 1966 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 176 |
| BstYI | RGATCY | 1 cut(s) | 1966 |
| BsuI | GTATCC | 1 cut(s) | 421 |
| BsuRI | GGCC | 3 cut(s) | 151, 387, 513 |
| BtgI | CCRYGG | 4 cut(s) | 1374, 1704, 1864, 2015 |
| BtgZI | GCGATG | 1 cut(s) | 1701 |
| BtsCI | GGATG | 6 cut(s) | 810, 1122, 1250, 1384, 1909, 2271 |
| BtsI | GCAGTG | 2 cut(s) | 321, 630 |
| BtsIMutI | CAGTG | 3 cut(s) | 321, 630, 1359 |
| BveI | ACCTGC | 1 cut(s) | 424 |
| Cac8I | GCNNGC | 7 cut(s) | 511, 567, 657, 892, 896, 1221, 1851 |
| CaiI | CAGNNNCTG | 3 cut(s) | 865, 1552, 2152 |
| CciI | TCATGA | 2 cut(s) | 838, 1515 |
| CfoI | GCGC | 3 cut(s) | 1460, 1779, 2169 |
| Cfr13I | GGNCC | 3 cut(s) | 149, 1004, 1414 |
| CseI | GACGC | 2 cut(s) | 102, 2117 |
| Csp6I | GTAC | 4 cut(s) | 823, 935, 1033, 2027 |
| CviQI | GTAC | 4 cut(s) | 823, 935, 1033, 2027 |
| DdeI | CTNAG | 9 cut(s) | 299, 330, 858, 1089, 1329, 1359, 1410, 1488, 2222 |
| DinI | GGCGCC | 1 cut(s) | 1459 |
| EaeI | YGGCCR | 1 cut(s) | 385 |
| Eam1104I | CTCTTC | 3 cut(s) | 543, 780, 2118 |
| EarI | CTCTTC | 3 cut(s) | 543, 780, 2118 |
| Ecl136II | GAGCTC | 1 cut(s) | 1513 |
| Eco130I | CCWWGG | 3 cut(s) | 1374, 1704, 1864 |
| Eco24I | GRGCYC | 1 cut(s) | 1515 |
| Eco47I | GGWCC | 2 cut(s) | 1004, 1414 |
| Eco47III | AGCGCT | 1 cut(s) | 1778 |
| Eco53kI | GAGCTC | 1 cut(s) | 1513 |
| Eco57I | CTGAAG | 3 cut(s) | 1367, 1473, 1991 |
| Eco72I | CACGTG | 1 cut(s) | 903 |
| Eco88I | CYCGRG | 2 cut(s) | 913, 1653 |
| EcoICRI | GAGCTC | 1 cut(s) | 1513 |
| EcoRII | CCWGG | 5 cut(s) | 601, 661, 998, 1612, 1726 |
| EcoT14I | CCWWGG | 3 cut(s) | 1374, 1704, 1864 |
| EcoT22I | ATGCAT | 2 cut(s) | 1299, 1647 |
| EcoT38I | GRGCYC | 1 cut(s) | 1515 |
| EgeI | GGCGCC | 1 cut(s) | 1459 |
| EheI | GGCGCC | 1 cut(s) | 1459 |
| ErhI | CCWWGG | 3 cut(s) | 1374, 1704, 1864 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2205, 2237, 2231, 2263 |
| FaqI | GGGAC | 1 cut(s) | 1663 |
| FbaI | TGATCA | 4 cut(s) | 268, 688, 841, 1498 |
| FokI | GGATG | 5 cut(s) | 817, 1129, 1257, 1391, 1916 |
| FriOI | GRGCYC | 1 cut(s) | 1515 |
| FspBI | CTAG | 3 cut(s) | 23, 614, 1287 |
| GlaI | GCGC | 3 cut(s) | 1459, 1778, 2168 |
| HaeII | RGCGCY | 2 cut(s) | 1461, 1780 |
| HaeIII | GGCC | 3 cut(s) | 151, 387, 513 |
| HapII | CCGG | 1 cut(s) | 1216 |
| HgaI | GACGC | 2 cut(s) | 102, 2117 |
| HhaI | GCGC | 3 cut(s) | 1460, 1779, 2169 |
| Hin1I | GRCGYC | 1 cut(s) | 1458 |
| Hin6I | GCGC | 3 cut(s) | 1458, 1777, 2167 |
| HinP1I | GCGC | 3 cut(s) | 1458, 1777, 2167 |
| HindIII | AAGCTT | 1 cut(s) | 44 |
| HinfI | GANTC | 7 cut(s) | 95, 334, 760, 1051, 1096, 1651, 2243 |
| HpaII | CCGG | 1 cut(s) | 1216 |
| HphI | GGTGA | 2 cut(s) | 65, 216 |
| Hpy166II | GTNNAC | 4 cut(s) | 136, 823, 1007, 1035 |
| Hpy8I | GTNNAC | 4 cut(s) | 136, 823, 1007, 1035 |
| Hpy99I | CGWCG | 1 cut(s) | 2133 |
| HpyAV | CCTTC | 3 cut(s) | 1312, 1448, 2257 |
| HpyCH4III | ACNGT | 4 cut(s) | 1354, 1788, 1841, 2026 |
| HpyCH4IV | ACGT | 3 cut(s) | 281, 902, 1767 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 506, 1188 |
| HpyF3I | CTNAG | 9 cut(s) | 299, 330, 858, 1089, 1329, 1359, 1410, 1488, 2222 |
| HpySE526I | ACGT | 3 cut(s) | 281, 902, 1767 |
| Hsp92I | GRCGYC | 1 cut(s) | 1458 |
| HspAI | GCGC | 3 cut(s) | 1458, 1777, 2167 |
| KasI | GGCGCC | 1 cut(s) | 1457 |
| KpnI | GGTACC | 1 cut(s) | 938 |
| Ksp22I | TGATCA | 4 cut(s) | 268, 688, 841, 1498 |
| LguI | GCTCTTC | 2 cut(s) | 543, 2118 |
| LmnI | GCTCC | 4 cut(s) | 622, 664, 790, 2149 |
| LweI | GCATC | 8 cut(s) | 487, 703, 795, 871, 1235, 1306, 1894, 2256 |
| MaeI | CTAG | 3 cut(s) | 23, 614, 1287 |
| MaeII | ACGT | 3 cut(s) | 281, 902, 1767 |
| MaeIII | GTNAC | 2 cut(s) | 250, 1735 |
| MboII | GAAGA | 9 cut(s) | 17, 24, 560, 797, 1105, 1360, 1404, 1583, 2135 |
| MfeI | CAATTG | 1 cut(s) | 1253 |
| MflI | RGATCY | 1 cut(s) | 1966 |
| MhlI | GDGCHC | 1 cut(s) | 1515 |
| MlsI | TGGCCA | 1 cut(s) | 387 |
| MluI | ACGCGT | 1 cut(s) | 111 |
| MluNI | TGGCCA | 1 cut(s) | 387 |
| Mly113I | GGCGCC | 1 cut(s) | 1458 |
| MlyI | GAGTC | 2 cut(s) | 343, 1645 |
| MmeI | TCCRAC | 4 cut(s) | 752, 831, 932, 2025 |
| Mox20I | TGGCCA | 1 cut(s) | 387 |
| Mph1103I | ATGCAT | 2 cut(s) | 1299, 1647 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1447 |
| MscI | TGGCCA | 1 cut(s) | 387 |
| MslI | CAYNNNNRTG | 4 cut(s) | 90, 131, 174, 1902 |
| Msp20I | TGGCCA | 1 cut(s) | 387 |
| MspA1I | CMGCKG | 2 cut(s) | 847, 1826 |
| MspCI | CTTAAG | 2 cut(s) | 554, 1301 |
| MspI | CCGG | 1 cut(s) | 1216 |
| MspR9I | CCNGG | 5 cut(s) | 603, 663, 1000, 1614, 1728 |
| MunI | CAATTG | 1 cut(s) | 1253 |
| MvaI | CCWGG | 5 cut(s) | 603, 663, 1000, 1614, 1728 |
| MvnI | CGCG | 2 cut(s) | 113, 2167 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 506, 1188 |
| NarI | GGCGCC | 1 cut(s) | 1458 |
| NcoI | CCATGG | 3 cut(s) | 1374, 1704, 1864 |
| NlaIV | GGNNCC | 6 cut(s) | 150, 920, 936, 996, 1005, 1459 |
| NmeAIII | GCCGAG | 1 cut(s) | 182 |
| NmuCI | GTSAC | 1 cut(s) | 1735 |
| NsiI | ATGCAT | 2 cut(s) | 1299, 1647 |
| NspI | RCATGY | 1 cut(s) | 1223 |
| PaeI | GCATGC | 1 cut(s) | 1223 |
| PagI | TCATGA | 2 cut(s) | 838, 1515 |
| PasI | CCCWGGG | 1 cut(s) | 999 |
| PciSI | GCTCTTC | 2 cut(s) | 543, 2118 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1447 |
| PfeI | GAWTC | 5 cut(s) | 95, 760, 1051, 1096, 2243 |
| PleI | GAGTC | 2 cut(s) | 342, 1645 |
| PluTI | GGCGCC | 1 cut(s) | 1461 |
| PmaCI | CACGTG | 1 cut(s) | 903 |
| PmlI | CACGTG | 1 cut(s) | 903 |
| PpsI | GAGTC | 2 cut(s) | 342, 1645 |
| Ppu21I | YACGTR | 1 cut(s) | 903 |
| PshBI | ATTAAT | 1 cut(s) | 1925 |
| Psp124BI | GAGCTC | 1 cut(s) | 1515 |
| Psp6I | CCWGG | 5 cut(s) | 601, 661, 998, 1612, 1726 |
| PspCI | CACGTG | 1 cut(s) | 903 |
| PspGI | CCWGG | 5 cut(s) | 601, 661, 998, 1612, 1726 |
| PspN4I | GGNNCC | 6 cut(s) | 150, 920, 936, 996, 1005, 1459 |
| PspPI | GGNCC | 3 cut(s) | 149, 1004, 1414 |
| PstI | CTGCAG | 2 cut(s) | 625, 672 |
| PstNI | CAGNNNCTG | 3 cut(s) | 865, 1552, 2152 |
| PsuI | RGATCY | 1 cut(s) | 1966 |
| PvuII | CAGCTG | 1 cut(s) | 1826 |
| RsaI | GTAC | 4 cut(s) | 824, 936, 1034, 2028 |
| RsaNI | GTAC | 4 cut(s) | 823, 935, 1033, 2027 |
| RseI | CAYNNNNRTG | 4 cut(s) | 90, 131, 174, 1902 |
| SacI | GAGCTC | 1 cut(s) | 1515 |
| SapI | GCTCTTC | 2 cut(s) | 543, 2118 |
| Sau96I | GGNCC | 3 cut(s) | 149, 1004, 1414 |
| SchI | GAGTC | 2 cut(s) | 343, 1645 |
| ScrFI | CCNGG | 5 cut(s) | 603, 663, 1000, 1614, 1728 |
| SduI | GDGCHC | 1 cut(s) | 1515 |
| SfaNI | GCATC | 8 cut(s) | 487, 703, 795, 871, 1235, 1306, 1894, 2256 |
| SfcI | CTRYAG | 3 cut(s) | 621, 668, 799 |
| SfoI | GGCGCC | 1 cut(s) | 1459 |
| SinI | GGWCC | 2 cut(s) | 1004, 1414 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 90, 131, 174, 1902 |
| SmlI | CTYRAG | 3 cut(s) | 554, 1301, 1962 |
| SmoI | CTYRAG | 3 cut(s) | 554, 1301, 1962 |
| SphI | GCATGC | 1 cut(s) | 1223 |
| SsiI | CCGC | 5 cut(s) | 563, 847, 1429, 1861, 2165 |
| SspDI | GGCGCC | 1 cut(s) | 1457 |
| SspI | AATATT | 2 cut(s) | 886, 1480 |
| SspMI | CTAG | 3 cut(s) | 23, 614, 1287 |
| SstI | GAGCTC | 1 cut(s) | 1515 |
| StyD4I | CCNGG | 5 cut(s) | 601, 661, 998, 1612, 1726 |
| StyI | CCWWGG | 3 cut(s) | 1374, 1704, 1864 |
| TaaI | ACNGT | 4 cut(s) | 1354, 1788, 1841, 2026 |
| TaiI | ACGT | 3 cut(s) | 284, 905, 1770 |
| TaqI | TCGA | 3 cut(s) | 306, 342, 1473 |
| TatI | WGTACW | 2 cut(s) | 822, 2026 |
| TauI | GCSGC | 1 cut(s) | 1431 |
| TfiI | GAWTC | 5 cut(s) | 95, 760, 1051, 1096, 2243 |
| TscAI | CASTG | 3 cut(s) | 321, 630, 1359 |
| TseFI | GTSAC | 1 cut(s) | 1735 |
| Tsp45I | GTSAC | 1 cut(s) | 1735 |
| TspGWI | ACGGA | 1 cut(s) | 2004 |
| TspRI | CASTG | 3 cut(s) | 321, 630, 1359 |
| Vha464I | CTTAAG | 2 cut(s) | 554, 1301 |
| VpaK11BI | GGWCC | 2 cut(s) | 1004, 1414 |
| VspI | ATTAAT | 1 cut(s) | 1925 |
| XapI | RAATTY | 5 cut(s) | 35, 213, 592, 1395, 1587 |
| XceI | RCATGY | 1 cut(s) | 1223 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1447 |
| XspI | CTAG | 3 cut(s) | 23, 614, 1287 |
| Zsp2I | ATGCAT | 2 cut(s) | 1299, 1647 |