Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0001707

Physical Location & Seq

Genomic Coordinates Forward (+)

257725 .. 258438

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g00290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGAAGAAGGAAGAACTGAACTAGAGTTTGATGAATTTGAGAAGCTTCTTGGTGAGATACCAAATGCTACTTCTGGGAACACACATTCTGATGAATCTGGAACAAAGAACGCGTCATTGTCTCCCATCTGTGTGAACTCCTGCAAAGGGCCATTGAGTGAAAAACTCCATAACAATGGGAGGATAGATGGGGGGAAGAACTCGGCAAATAAAATTCAGAAATCACCTGTGAAAAGGGTTCAACAAGATGTAACAAATCTACCCGATGATCAATCCTTAACGTCTGCACTCGCAGGACTGAGCTTCAACGGTGCAGTGAATATGGAAGCTGGGAGTCATGTTGAAAATAGTAAATCCTTGCAGAACTACTCCTTTTCAATGAATGGCCAAATCCCAAACAGCTTAAAGACACAGGTTTCAAATATGGATACGCCGGTCATGGTTGTTCCCTCTTTCCAAGCACCAAATAACATACCTTGTGGATTTTATGAGTTTGATGCGATAAATGCAGGCCAAGAAAGTTCAAATATGTCAAAGTTCAATTCTGAAGAGCTTAAGAAACCGCAGGCTGCCTATTCACGGCCCATTGAAAATTTATCTCCTGGTGTTCCTCTAGCTCCTGCAGTGCAAGGTTTTCATTTCCTTTCTAATGTGCCTGCTCCTGGTCTGCAGTTTCCTCTAACATCTGATCGATCAGCAGCAATTCTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUF

Protein Analysis

238

Amino Acids

25.39

Weight (kDa)

5.13

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56510 AT5G56510 AT5G56510 AT5G56510 AT5G56510 AT5G56510
fragaria_vesca	FvH4_3g45790 FvH4_3g45790 FvH4_3g45790 FvH4_3g45790
malus_domestica	MD03G1003000.v1.1 MD11G1002800.v1.1
prunus_persica	Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1
pyrus_communis	pycom03g00290 pycom03g00300 pycom11g00260
rosa_chinensis	RchiOBHm_Chr3g0468621 RchiOBHm_Chr5g0083871
rosa_laevigata	RLG00000037060
rosa_multiflora	Rmu_sc0001152.1_g000020 Rmu_sc0012873.1_g000001 Rmu_sc0014979.1_g000001 Rmu_sc0024007.1_g000007 Rmu_sc0026864.1_g000002
rosa_roxburghii	Rroxscaffold_1G00000720 Rroxscaffold_1G00026610 Rroxscaffold_3G00221790 Rroxscaffold_6G00406920 Rroxscaffold_6G00406930 Rroxscaffold_7G00203860
rosa_rugosa	Rorug05G0486900.1 Rorug05G0487000
rosa_samantha	Rh1AG075100 Rh1CG090400 Rh3AG144600 Rh5AG539900 Rh5BG565100 Rh5CG586900
rosa_wichuraiana	Rw2G018590 Rw5G048100 Rw5G050200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	113
AciI	CCGC	1 cut(s)	563
AcoI	YGGCCR	1 cut(s)	385
AcsI	RAATTY	3 cut(s)	35, 213, 592
AcuI	CTGAAG	1 cut(s)	567
AfiI	CCNNNNNNNGG	3 cut(s)	147, 579, 662
AflII	CTTAAG	1 cut(s)	554
AflIII	ACRYGT	1 cut(s)	111
AgsI	TTSAA	8 cut(s)	242, 307, 344, 378, 420, 525, 541, 590
AjnI	CCWGG	2 cut(s)	601, 661
AjuI	GAANNNNNNNTTGG	2 cut(s)	55, 87
AluBI	AGCT	6 cut(s)	46, 303, 329, 402, 553, 617
AluI	AGCT	6 cut(s)	46, 303, 329, 402, 553, 617
Alw26I	GTCTC	1 cut(s)	126
AoxI	GGCC	4 cut(s)	149, 385, 511, 581
ApeKI	GCWGC	2 cut(s)	569, 698
ApoI	RAATTY	3 cut(s)	35, 213, 592
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
AspS9I	GGNCC	2 cut(s)	149, 582
AsuHPI	GGTGA	2 cut(s)	65, 216
BaeI	ACNNNNGTAYC	2 cut(s)	420, 453
BalI	TGGCCA	1 cut(s)	387
BbvI	GCAGC	2 cut(s)	556, 710
BccI	CCATC	2 cut(s)	134, 182
BceAI	ACGGC	1 cut(s)	596
BciT130I	CCWGG	2 cut(s)	603, 663
BciVI	GTATCC	1 cut(s)	421
BclI	TGATCA	1 cut(s)	268
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	2 cut(s)	23, 614
BfmI	CTRYAG	2 cut(s)	621, 668
BfrI	CTTAAG	1 cut(s)	554
BfuI	GTATCC	1 cut(s)	421
BisI	GCNGC	2 cut(s)	570, 699
BlsI	GCNGC	2 cut(s)	571, 700
Bme1390I	CCNGG	2 cut(s)	603, 663
BmgT120I	GGNCC	2 cut(s)	149, 582
BmrFI	CCNGG	2 cut(s)	603, 663
BmsI	GCATC	1 cut(s)	487
Bsa29I	ATCGAT	1 cut(s)	691
Bsc4I	CCNNNNNNNGG	3 cut(s)	147, 579, 662
Bse118I	RCCGGY	1 cut(s)	433
BseBI	CCWGG	2 cut(s)	603, 663
BseCI	ATCGAT	1 cut(s)	691
BseLI	CCNNNNNNNGG	3 cut(s)	147, 579, 662
BseMII	CTCAG	1 cut(s)	290
BseXI	GCAGC	2 cut(s)	556, 710
BseYI	CCCAGC	1 cut(s)	329
BsgI	GTGCAG	2 cut(s)	270, 333
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	4 cut(s)	151, 387, 513, 583
BshVI	ATCGAT	1 cut(s)	691
BsiSI	CCGG	1 cut(s)	434
BslI	CCNNNNNNNGG	3 cut(s)	147, 579, 662
BsmAI	GTCTC	1 cut(s)	126
BsnI	GGCC	4 cut(s)	151, 387, 513, 583
Bsp143I	GATC	3 cut(s)	268, 688, 692
BspACI	CCGC	1 cut(s)	563
BspANI	GGCC	4 cut(s)	151, 387, 513, 583
BspCNI	CTCAG	1 cut(s)	291
BspDI	ATCGAT	1 cut(s)	691
BspFNI	CGCG	1 cut(s)	113
BspMAI	CTGCAG	2 cut(s)	625, 672
BspQI	GCTCTTC	1 cut(s)	543
BspTI	CTTAAG	1 cut(s)	554
BsrFI	RCCGGY	1 cut(s)	433
BssAI	RCCGGY	1 cut(s)	433
BssMI	GATC	3 cut(s)	268, 688, 692
Bst2UI	CCWGG	2 cut(s)	603, 663
Bst4CI	ACNGT	1 cut(s)	311
Bst6I	CTCTTC	1 cut(s)	543
BstAFI	CTTAAG	1 cut(s)	554
BstC8I	GCNNGC	3 cut(s)	511, 567, 657
BstDEI	CTNAG	1 cut(s)	299
BstFNI	CGCG	1 cut(s)	113
BstKTI	GATC	3 cut(s)	271, 691, 695
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	3 cut(s)	268, 688, 692
BstMWI	GCNNNNNNNGC	1 cut(s)	506
BstNI	CCWGG	2 cut(s)	603, 663
BstSCI	CCNGG	2 cut(s)	601, 661
BstSFI	CTRYAG	2 cut(s)	621, 668
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	2 cut(s)	556, 710
BstXI	CCANNNNNNTGG	1 cut(s)	176
Bsu15I	ATCGAT	1 cut(s)	691
BsuI	GTATCC	1 cut(s)	421
BsuRI	GGCC	4 cut(s)	151, 387, 513, 583
BsuTUI	ATCGAT	1 cut(s)	691
BtsI	GCAGTG	2 cut(s)	321, 630
BtsIMutI	CAGTG	2 cut(s)	321, 630
Cac8I	GCNNGC	3 cut(s)	511, 567, 657
Cfr10I	RCCGGY	1 cut(s)	433
Cfr13I	GGNCC	2 cut(s)	149, 582
ClaI	ATCGAT	1 cut(s)	691
CseI	GACGC	1 cut(s)	102
CviAII	CATG	2 cut(s)	338, 439
DdeI	CTNAG	1 cut(s)	299
DpnI	GATC	3 cut(s)	270, 690, 694
DpnII	GATC	3 cut(s)	268, 688, 692
EaeI	YGGCCR	1 cut(s)	385
Eam1104I	CTCTTC	1 cut(s)	543
EarI	CTCTTC	1 cut(s)	543
Eco57I	CTGAAG	1 cut(s)	567
EcoRII	CCWGG	2 cut(s)	601, 661
FaeI	CATG	2 cut(s)	341, 442
FaiI	YATR	8 cut(s)	171, 323, 339, 425, 440, 473, 489, 530
FatI	CATG	2 cut(s)	337, 438
FbaI	TGATCA	1 cut(s)	268
Fnu4HI	GCNGC	2 cut(s)	570, 699
Fsp4HI	GCNGC	2 cut(s)	570, 699
FspBI	CTAG	2 cut(s)	23, 614
GluI	GCNGC	2 cut(s)	570, 699
GsaI	CCCAGC	1 cut(s)	333
HaeIII	GGCC	4 cut(s)	151, 387, 513, 583
HapII	CCGG	1 cut(s)	434
HgaI	GACGC	1 cut(s)	102
Hin1II	CATG	2 cut(s)	341, 442
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	2 cut(s)	95, 334
HpaII	CCGG	1 cut(s)	434
HphI	GGTGA	2 cut(s)	65, 216
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	4 cut(s)	91, 219, 547, 688
Hpy188III	TCNNGA	2 cut(s)	99, 711
Hpy8I	GTNNAC	1 cut(s)	136
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4IV	ACGT	1 cut(s)	281
HpyCH4V	TGCA	8 cut(s)	144, 287, 314, 361, 509, 623, 628, 670
HpyF10VI	GCNNNNNNNGC	1 cut(s)	506
HpyF3I	CTNAG	1 cut(s)	299
HpySE526I	ACGT	1 cut(s)	281
Hsp92II	CATG	2 cut(s)	341, 442
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	3 cut(s)	268, 688, 692
LguI	GCTCTTC	1 cut(s)	543
LmnI	GCTCC	2 cut(s)	622, 664
Lsp1109I	GCAGC	2 cut(s)	556, 710
LweI	GCATC	1 cut(s)	487
MaeI	CTAG	2 cut(s)	23, 614
MaeII	ACGT	1 cut(s)	281
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	3 cut(s)	270, 690, 694
MboI	GATC	3 cut(s)	268, 688, 692
MboII	GAAGA	4 cut(s)	17, 24, 208, 560
MlsI	TGGCCA	1 cut(s)	387
MluCI	AATT	5 cut(s)	35, 213, 541, 592, 702
MluI	ACGCGT	1 cut(s)	111
MluNI	TGGCCA	1 cut(s)	387
MlyI	GAGTC	1 cut(s)	343
MnlI	CCTC	4 cut(s)	174, 460, 621, 687
Mox20I	TGGCCA	1 cut(s)	387
MscI	TGGCCA	1 cut(s)	387
MseI	TTAA	3 cut(s)	278, 404, 555
MslI	CAYNNNNRTG	3 cut(s)	90, 131, 174
Msp20I	TGGCCA	1 cut(s)	387
MspCI	CTTAAG	1 cut(s)	554
MspI	CCGG	1 cut(s)	434
MspR9I	CCNGG	2 cut(s)	603, 663
MvaI	CCWGG	2 cut(s)	603, 663
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	506
NdeII	GATC	3 cut(s)	268, 688, 692
NlaIII	CATG	2 cut(s)	341, 442
NmeAIII	GCCGAG	1 cut(s)	182
PciSI	GCTCTTC	1 cut(s)	543
PfeI	GAWTC	1 cut(s)	95
PkrI	GCNGC	2 cut(s)	571, 700
PleI	GAGTC	1 cut(s)	342
PpsI	GAGTC	1 cut(s)	342
Psp6I	CCWGG	2 cut(s)	601, 661
PspFI	CCCAGC	1 cut(s)	329
PspGI	CCWGG	2 cut(s)	601, 661
PspPI	GGNCC	2 cut(s)	149, 582
PstI	CTGCAG	2 cut(s)	625, 672
RseI	CAYNNNNRTG	3 cut(s)	90, 131, 174
SapI	GCTCTTC	1 cut(s)	543
SaqAI	TTAA	3 cut(s)	278, 404, 555
SatI	GCNGC	2 cut(s)	570, 699
Sau3AI	GATC	3 cut(s)	268, 688, 692
Sau96I	GGNCC	2 cut(s)	149, 582
SchI	GAGTC	1 cut(s)	343
ScrFI	CCNGG	2 cut(s)	603, 663
SfaNI	GCATC	1 cut(s)	487
SfcI	CTRYAG	2 cut(s)	621, 668
SmiMI	CAYNNNNRTG	3 cut(s)	90, 131, 174
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
Sse9I	AATT	5 cut(s)	35, 213, 541, 592, 702
SsiI	CCGC	1 cut(s)	563
SspMI	CTAG	2 cut(s)	23, 614
StyD4I	CCNGG	2 cut(s)	601, 661
TaaI	ACNGT	1 cut(s)	311
TaiI	ACGT	1 cut(s)	284
TaqI	TCGA	1 cut(s)	691
TasI	AATT	5 cut(s)	35, 213, 541, 592, 702
TfiI	GAWTC	1 cut(s)	95
Tru1I	TTAA	3 cut(s)	278, 404, 555
Tru9I	TTAA	3 cut(s)	278, 404, 555
TscAI	CASTG	2 cut(s)	321, 630
TseI	GCWGC	2 cut(s)	569, 698
TspDTI	ATGAA	4 cut(s)	48, 108, 395, 626
TspRI	CASTG	2 cut(s)	321, 630
Vha464I	CTTAAG	1 cut(s)	554
XapI	RAATTY	3 cut(s)	35, 213, 592
XspI	CTAG	2 cut(s)	23, 614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.