Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001152.1

Orthogroup ID

OG0001707

Physical Location & Seq

Genomic Coordinates Reverse (-)

92568 .. 94648

Gene Structure 2081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001152.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

atggtggtcgtggaatcactgggatggctgacggagttgactataatgcccaagaaacaccgcgtcattgccggcatcggcatcatcatcaccatcaccgcctccgtcactctttctccggatctgaaatccaagcctccgagtagtaccgaatcactgaatcgatttcgtgtggcagttgttaggtttctatattttgtgggcattttggtcgttgattggttcaatttcacgattactgttttcctttcggtttttgaaattgagcaattttggtactttatacaaatgaatgatgaccagcaaatgcaaattcttcattcaatcaccaaaaaatcaggagaacttgttaatatttcctgtgatatgcatgggacaagggctgttcaaaaggttattgaaaccctcaaaactccagagcagttttccatggttgtttcctcactaaagcctgggatagtgaacttgataaagaacacaaatggcaaccacgttgcgcagcgctgcttgcagtatttaacacctgaatatcgtgagtttctttttgaagctgcaactagtaattgtgttgagcttgcaaccgaccgtcatggctgttgtgtgcttcaaaaatgtcttagtcattctgatggtgagcaaagagaccgattgatctgcaagatcacttccaatgcactaatcctttcccaagatccatttgggaactatgtcgtgcaattcgtctttgagcttcagcttccgtgggcgacagtagacattcttgagcagttggagggtaattatggggatttgtctgtgcaagacccttatggcaattatgttatccaagcagcactcagtcaatcaaagggaacacttcattctaaactggtagaagcaataaaacctcatatgccagttctccggaccagtccctatgggaagaaaatcctctctaccaatattttgaagaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUF

Protein Analysis

318

Amino Acids

35.86

Weight (kDa)

7.61

Isoelectric Point (pI)

33.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56510 AT5G56510 AT5G56510 AT5G56510 AT5G56510 AT5G56510
fragaria_vesca	FvH4_3g45790 FvH4_3g45790 FvH4_3g45790 FvH4_3g45790
malus_domestica	MD03G1003000.v1.1 MD11G1002800.v1.1
prunus_persica	Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1
pyrus_communis	pycom03g00290 pycom03g00300 pycom11g00260
rosa_chinensis	RchiOBHm_Chr3g0468621 RchiOBHm_Chr5g0083871
rosa_laevigata	RLG00000037060
rosa_multiflora	Rmu_sc0001152.1_g000020 Rmu_sc0012873.1_g000001 Rmu_sc0014979.1_g000001 Rmu_sc0024007.1_g000007 Rmu_sc0026864.1_g000002
rosa_roxburghii	Rroxscaffold_1G00000720 Rroxscaffold_1G00026610 Rroxscaffold_3G00221790 Rroxscaffold_6G00406920 Rroxscaffold_6G00406930 Rroxscaffold_7G00203860
rosa_rugosa	Rorug05G0486900.1 Rorug05G0487000
rosa_samantha	Rh1AG075100 Rh1CG090400 Rh3AG144600 Rh5AG539900 Rh5BG565100 Rh5CG586900
rosa_wichuraiana	Rw2G018590 Rw5G048100 Rw5G050200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	498
AccI	GTMKAC	1 cut(s)	753
AccII	CGCG	1 cut(s)	63
AccIII	TCCGGA	2 cut(s)	118, 903
AciI	CCGC	2 cut(s)	61, 99
AclWI	GGATC	2 cut(s)	129, 686
AcsI	RAATTY	1 cut(s)	312
AcuI	CTGAAG	1 cut(s)	716
AfaI	GTAC	2 cut(s)	148, 278
AfeI	AGCGCT	1 cut(s)	503
AgsI	TTSAA	8 cut(s)	226, 260, 324, 389, 401, 548, 608, 949
AhlI	ACTAGT	1 cut(s)	557
AjnI	CCWGG	1 cut(s)	451
AluBI	AGCT	4 cut(s)	551, 574, 730, 736
AluI	AGCT	4 cut(s)	551, 574, 730, 736
Alw26I	GTCTC	1 cut(s)	636
AlwI	GGATC	2 cut(s)	129, 686
Aor13HI	TCCGGA	2 cut(s)	118, 903
Aor51HI	AGCGCT	1 cut(s)	503
ApeKI	GCWGC	4 cut(s)	499, 504, 551, 830
ApoI	RAATTY	1 cut(s)	312
AspLEI	GCGC	2 cut(s)	499, 504
AspS9I	GGNCC	1 cut(s)	906
AsuHPI	GGTGA	4 cut(s)	82, 88, 319, 644
AvaII	GGWCC	1 cut(s)	906
BbvI	GCAGC	4 cut(s)	491, 511, 538, 842
BccI	CCATC	3 cut(s)	18, 101, 623
BcgI	CGANNNNNNTGC	4 cut(s)	193, 227, 636, 670
BciT130I	CCWGG	1 cut(s)	453
BcoDI	GTCTC	1 cut(s)	636
BcuI	ACTAGT	1 cut(s)	557
BfaI	CTAG	1 cut(s)	558
BfoI	RGCGCY	1 cut(s)	505
BisI	GCNGC	4 cut(s)	500, 505, 552, 831
BlsI	GCNGC	4 cut(s)	501, 506, 553, 832
Bme1390I	CCNGG	1 cut(s)	453
Bme18I	GGWCC	1 cut(s)	906
BmgT120I	GGNCC	1 cut(s)	906
BmrFI	CCNGG	1 cut(s)	453
BmrI	ACTGGG	1 cut(s)	29
BmsI	GCATC	2 cut(s)	84, 90
BmuI	ACTGGG	1 cut(s)	29
BpmI	CTGGAG	1 cut(s)	399
BpuEI	CTTGAG	1 cut(s)	782
Bsa29I	ATCGAT	1 cut(s)	163
BsaI	GGTCTC	1 cut(s)	636
BsaJI	CCNNGG	3 cut(s)	429, 452, 740
BsaWI	WCCGGW	2 cut(s)	118, 903
BsaXI	ACNNNNNCTCC	4 cut(s)	100, 130, 333, 363
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	4 cut(s)	24, 873, 896, 909
Bse3DI	GCAATG	1 cut(s)	66
BseAI	TCCGGA	2 cut(s)	118, 903
BseBI	CCWGG	1 cut(s)	453
BseCI	ATCGAT	1 cut(s)	163
BseDI	CCNNGG	3 cut(s)	429, 452, 740
BseGI	GGATG	1 cut(s)	29
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	850
BseNI	ACTGG	4 cut(s)	24, 873, 896, 909
BseXI	GCAGC	4 cut(s)	491, 511, 538, 842
Bsh1236I	CGCG	1 cut(s)	63
Bsh1285I	CGRYCG	1 cut(s)	586
BshVI	ATCGAT	1 cut(s)	163
BsiEI	CGRYCG	1 cut(s)	586
BsiSI	CCGG	3 cut(s)	72, 119, 904
BslFI	GGGAC	2 cut(s)	388, 897
BsmAI	GTCTC	1 cut(s)	636
BsmFI	GGGAC	2 cut(s)	388, 897
Bso31I	GGTCTC	1 cut(s)	636
Bsp13I	TCCGGA	2 cut(s)	118, 903
Bsp143I	GATC	4 cut(s)	121, 651, 660, 691
Bsp19I	CCATGG	1 cut(s)	429
BspACI	CCGC	2 cut(s)	61, 99
BspCNI	CTCAG	1 cut(s)	849
BspDI	ATCGAT	1 cut(s)	163
BspEI	TCCGGA	2 cut(s)	118, 903
BspFNI	CGCG	1 cut(s)	63
BspPI	GGATC	2 cut(s)	129, 686
BspTNI	GGTCTC	1 cut(s)	636
BsrDI	GCAATG	1 cut(s)	66
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	4 cut(s)	24, 873, 896, 909
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	3 cut(s)	429, 452, 740
BssMI	GATC	4 cut(s)	121, 651, 660, 691
BssT1I	CCWWGG	1 cut(s)	429
Bst2UI	CCWGG	1 cut(s)	453
Bst4CI	ACNGT	3 cut(s)	241, 587, 751
BstC8I	GCNNGC	3 cut(s)	73, 509, 576
BstDEI	CTNAG	2 cut(s)	617, 836
BstDSI	CCRYGG	2 cut(s)	429, 740
BstF5I	GGATG	1 cut(s)	29
BstFNI	CGCG	1 cut(s)	63
BstH2I	RGCGCY	1 cut(s)	505
BstHHI	GCGC	2 cut(s)	499, 504
BstKTI	GATC	4 cut(s)	124, 654, 663, 694
BstMAI	GTCTC	1 cut(s)	636
BstMBI	GATC	4 cut(s)	121, 651, 660, 691
BstMCI	CGRYCG	1 cut(s)	586
BstMWI	GCNNNNNNNGC	1 cut(s)	508
BstNI	CCWGG	1 cut(s)	453
BstSCI	CCNGG	1 cut(s)	451
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	4 cut(s)	491, 511, 538, 842
BstX2I	RGATCY	2 cut(s)	121, 691
BstYI	RGATCY	2 cut(s)	121, 691
Bsu15I	ATCGAT	1 cut(s)	163
BsuTUI	ATCGAT	1 cut(s)	163
BtgI	CCRYGG	2 cut(s)	429, 740
BtsCI	GGATG	1 cut(s)	29
BtsIMutI	CAGTG	2 cut(s)	17, 155
Cac8I	GCNNGC	3 cut(s)	73, 509, 576
CfoI	GCGC	2 cut(s)	499, 504
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	906
ClaI	ATCGAT	1 cut(s)	163
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	2 cut(s)	147, 277
CviAII	CATG	3 cut(s)	371, 430, 590
CviJI	RGCY	9 cut(s)	28, 136, 383, 451, 551, 574, 594, 730, 736
CviKI_1	RGCY	9 cut(s)	28, 136, 383, 451, 551, 574, 594, 730, 736
CviQI	GTAC	2 cut(s)	147, 277
DdeI	CTNAG	2 cut(s)	617, 836
DpnI	GATC	4 cut(s)	123, 653, 662, 693
DpnII	GATC	4 cut(s)	121, 651, 660, 691
Eco130I	CCWWGG	1 cut(s)	429
Eco31I	GGTCTC	1 cut(s)	636
Eco47I	GGWCC	1 cut(s)	906
Eco47III	AGCGCT	1 cut(s)	503
Eco57I	CTGAAG	1 cut(s)	716
EcoRII	CCWGG	1 cut(s)	451
EcoT14I	CCWWGG	1 cut(s)	429
EcoT22I	ATGCAT	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	429
FaeI	CATG	3 cut(s)	374, 433, 593
FaqI	GGGAC	2 cut(s)	388, 897
FatI	CATG	3 cut(s)	370, 429, 589
FauNDI	CATATG	1 cut(s)	891
FblI	GTMKAC	1 cut(s)	753
Fnu4HI	GCNGC	4 cut(s)	500, 505, 552, 831
FokI	GGATG	1 cut(s)	36
Fsp4HI	GCNGC	4 cut(s)	500, 505, 552, 831
FspBI	CTAG	1 cut(s)	558
FspI	TGCGCA	1 cut(s)	498
GlaI	GCGC	2 cut(s)	498, 503
GluI	GCNGC	4 cut(s)	500, 505, 552, 831
GsuI	CTGGAG	1 cut(s)	399
HaeII	RGCGCY	1 cut(s)	505
HapII	CCGG	3 cut(s)	72, 119, 904
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	2 cut(s)	499, 504
Hin1II	CATG	3 cut(s)	374, 433, 593
Hin6I	GCGC	2 cut(s)	497, 502
HinP1I	GCGC	2 cut(s)	497, 502
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HinfI	GANTC	3 cut(s)	14, 152, 160
HpaII	CCGG	3 cut(s)	72, 119, 904
HphI	GGTGA	4 cut(s)	82, 88, 319, 644
Hpy166II	GTNNAC	3 cut(s)	39, 463, 754
Hpy188I	TCNGA	3 cut(s)	126, 141, 628
Hpy188III	TCNNGA	7 cut(s)	119, 232, 339, 416, 533, 761, 904
Hpy8I	GTNNAC	3 cut(s)	39, 463, 754
HpyCH4III	ACNGT	3 cut(s)	241, 587, 751
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	9 cut(s)	310, 370, 511, 554, 578, 657, 674, 715, 799
HpyF10VI	GCNNNNNNNGC	1 cut(s)	508
HpyF3I	CTNAG	2 cut(s)	617, 836
HpySE526I	ACGT	1 cut(s)	492
Hsp92II	CATG	3 cut(s)	374, 433, 593
HspAI	GCGC	2 cut(s)	497, 502
Kpn2I	TCCGGA	2 cut(s)	118, 903
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
Kzo9I	GATC	4 cut(s)	121, 651, 660, 691
Lsp1109I	GCAGC	4 cut(s)	491, 511, 538, 842
LweI	GCATC	2 cut(s)	84, 90
MaeI	CTAG	1 cut(s)	558
MaeII	ACGT	1 cut(s)	492
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	4 cut(s)	123, 653, 662, 693
MboI	GATC	4 cut(s)	121, 651, 660, 691
MboII	GAAGA	2 cut(s)	308, 934
MflI	RGATCY	2 cut(s)	121, 691
MluCI	AATT	8 cut(s)	226, 261, 269, 312, 562, 716, 778, 814
MmeI	TCCRAC	1 cut(s)	750
MnlI	CCTC	7 cut(s)	112, 147, 416, 451, 766, 897, 941
Mph1103I	ATGCAT	1 cut(s)	372
MroI	TCCGGA	2 cut(s)	118, 903
MroNI	GCCGGC	1 cut(s)	71
MseI	TTAA	2 cut(s)	351, 518
MslI	CAYNNNNRTG	2 cut(s)	22, 627
MspI	CCGG	3 cut(s)	72, 119, 904
MspR9I	CCNGG	1 cut(s)	453
MteI	GCGCNGCGC	1 cut(s)	500
MvaI	CCWGG	1 cut(s)	453
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	1 cut(s)	508
NaeI	GCCGGC	1 cut(s)	73
NcoI	CCATGG	1 cut(s)	429
NdeI	CATATG	1 cut(s)	891
NdeII	GATC	4 cut(s)	121, 651, 660, 691
NgoMIV	GCCGGC	1 cut(s)	71
NlaIII	CATG	3 cut(s)	374, 433, 593
NmuCI	GTSAC	1 cut(s)	106
NsbI	TGCGCA	1 cut(s)	498
NsiI	ATGCAT	1 cut(s)	372
PcsI	WCGNNNNNNNCGW	1 cut(s)	717
PdiI	GCCGGC	1 cut(s)	73
PfeI	GAWTC	3 cut(s)	14, 152, 160
PkrI	GCNGC	4 cut(s)	501, 506, 553, 832
Psp6I	CCWGG	1 cut(s)	451
PspGI	CCWGG	1 cut(s)	451
PspPI	GGNCC	1 cut(s)	906
PsuI	RGATCY	2 cut(s)	121, 691
RsaI	GTAC	2 cut(s)	148, 278
RsaNI	GTAC	2 cut(s)	147, 277
RseI	CAYNNNNRTG	2 cut(s)	22, 627
SaqAI	TTAA	2 cut(s)	351, 518
SatI	GCNGC	4 cut(s)	500, 505, 552, 831
Sau3AI	GATC	4 cut(s)	121, 651, 660, 691
Sau96I	GGNCC	1 cut(s)	906
ScrFI	CCNGG	1 cut(s)	453
SetI	ASST	9 cut(s)	188, 396, 495, 526, 553, 576, 732, 738, 889
SfaNI	GCATC	2 cut(s)	84, 90
SinI	GGWCC	1 cut(s)	906
SmiMI	CAYNNNNRTG	2 cut(s)	22, 627
SmlI	CTYRAG	1 cut(s)	761
SmoI	CTYRAG	1 cut(s)	761
SpeI	ACTAGT	1 cut(s)	557
Sse9I	AATT	8 cut(s)	226, 261, 269, 312, 562, 716, 778, 814
SsiI	CCGC	2 cut(s)	61, 99
SspI	AATATT	2 cut(s)	355, 943
SspMI	CTAG	1 cut(s)	558
StyD4I	CCNGG	1 cut(s)	451
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	3 cut(s)	241, 587, 751
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	1 cut(s)	163
TaqII	GACCGA	1 cut(s)	660
TasI	AATT	8 cut(s)	226, 261, 269, 312, 562, 716, 778, 814
TfiI	GAWTC	3 cut(s)	14, 152, 160
Tru1I	TTAA	2 cut(s)	351, 518
Tru9I	TTAA	2 cut(s)	351, 518
TscAI	CASTG	2 cut(s)	24, 162
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	4 cut(s)	499, 504, 551, 830
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	3 cut(s)	305, 308, 848
TspGWI	ACGGA	3 cut(s)	47, 94, 729
TspRI	CASTG	2 cut(s)	24, 162
VpaK11BI	GGWCC	1 cut(s)	906
XapI	RAATTY	1 cut(s)	312
XcmI	CCANNNNNNNNNTGG	1 cut(s)	695
XmiI	GTMKAC	1 cut(s)	753
XspI	CTAG	1 cut(s)	558
Zsp2I	ATGCAT	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.