Rroxscaffold_6G00406920

pumilio homolog

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
29466828 .. 29467131
304 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_6G00406920.1

Sequence Viewer

Length: 162 bp
ATGCAAGACCCTTATGGCAATTATGTTATCCAAGCAGCACTCGGTCAATCAAAGGGAACACTTCATTCTAAACTGGTAGAAGCAATAAAACCTCATATGCCAGTTCTCCGGACCAGTCCCTATGGGAAGAAAATCCTCTCTACCAATATTTTGAAGAAATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

53

Amino Acids

5.86

Weight (kDa)

10.0

Isoelectric Point (pI)

39.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 108
AgsI TTSAA 1 cut(s) 154
Aor13HI TCCGGA 1 cut(s) 108
ApeKI GCWGC 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 111
AvaII GGWCC 1 cut(s) 111
BbvI GCAGC 1 cut(s) 47
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme18I GGWCC 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 111
BsaWI WCCGGW 1 cut(s) 108
Bse1I ACTGG 3 cut(s) 78, 101, 114
BseAI TCCGGA 1 cut(s) 108
BseNI ACTGG 3 cut(s) 78, 101, 114
BseXI GCAGC 1 cut(s) 47
BsiSI CCGG 1 cut(s) 109
BslFI GGGAC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 102
Bsp13I TCCGGA 1 cut(s) 108
BspEI TCCGGA 1 cut(s) 108
BsrI ACTGG 3 cut(s) 78, 101, 114
BstV1I GCAGC 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 111
FaiI YATR 5 cut(s) 15, 24, 96, 98, 123
FaqI GGGAC 1 cut(s) 102
FauNDI CATATG 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 36
GluI GCNGC 1 cut(s) 36
HapII CCGG 1 cut(s) 109
HpaII CCGG 1 cut(s) 109
Hpy188III TCNNGA 1 cut(s) 109
HpyCH4V TGCA 1 cut(s) 4
Kpn2I TCCGGA 1 cut(s) 108
LpnPI CCDG 4 cut(s) 59, 114, 122, 127
Lsp1109I GCAGC 1 cut(s) 47
MboII GAAGA 1 cut(s) 139
MluCI AATT 1 cut(s) 19
MnlI CCTC 2 cut(s) 102, 146
MroI TCCGGA 1 cut(s) 108
MspI CCGG 1 cut(s) 109
NdeI CATATG 1 cut(s) 96
PkrI GCNGC 1 cut(s) 37
PspPI GGNCC 1 cut(s) 111
SatI GCNGC 1 cut(s) 36
Sau96I GGNCC 1 cut(s) 111
SetI ASST 1 cut(s) 94
SgeI CNNG 7 cut(s) 17, 44, 53, 86, 113, 121, 126
SinI GGWCC 1 cut(s) 111
Sse9I AATT 1 cut(s) 19
SspI AATATT 1 cut(s) 148
TaqII GACCGA 1 cut(s) 32
TasI AATT 1 cut(s) 19
TseI GCWGC 1 cut(s) 35
TspDTI ATGAA 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.