Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001707

Physical Location & Seq

Genomic Coordinates Reverse (-)

29467155 .. 29468324

Gene Structure 1170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00406930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGAATTCTTGCCAACAACAGGACAAGGGCTGTTCAAAAGGTTATTGAAACCCTCAAAACTCCGAGCAGTTTTCCATGGTTGTTTCCTCACTAAAGCCTGCGATAGTGAACTTGATAAAGAACACAAATGGCAACCACATTGCGCAGCGCTGCTTGCGTATTTAACACCTGAATATCGTGAGTCATTCGATGGTGAGCAAAGAGACCGATTGATCTGCAAGATCACTTCCAATGCACTAATCCTTTCCCAAGATCCATTTGGGAACTATGTCGTGCAATTCGTCTTTGAGCTTCGACTTCCGTGGGCGACAGTAGACATTCTTGAGCAGTTGGAGGGTAATTATGGGGATTTGTCCGTGCAGAAGTATAGCAGTAATGTGGTTGAAAAAAGCCTGAAATACGCAGGTGAAGAGCGCCGTGCTCGCATTATTCAGAACCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUF zf-CCCH

Protein Analysis

147

Amino Acids

16.99

Weight (kDa)

7.66

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUF	PF00806	115 - 145	1e-05	Pumilio-family RNA binding repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56510 AT5G56510 AT5G56510 AT5G56510 AT5G56510 AT5G56510
fragaria_vesca	FvH4_3g45790 FvH4_3g45790 FvH4_3g45790 FvH4_3g45790
malus_domestica	MD03G1003000.v1.1 MD11G1002800.v1.1
prunus_persica	Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1
pyrus_communis	pycom03g00290 pycom03g00300 pycom11g00260
rosa_chinensis	RchiOBHm_Chr3g0468621 RchiOBHm_Chr5g0083871
rosa_laevigata	RLG00000037060
rosa_multiflora	Rmu_sc0001152.1_g000020 Rmu_sc0012873.1_g000001 Rmu_sc0014979.1_g000001 Rmu_sc0024007.1_g000007 Rmu_sc0026864.1_g000002
rosa_roxburghii	Rroxscaffold_1G00000720 Rroxscaffold_1G00026610 Rroxscaffold_3G00221790 Rroxscaffold_6G00406920 Rroxscaffold_6G00406930 Rroxscaffold_7G00203860
rosa_rugosa	Rorug05G0486900.1 Rorug05G0487000
rosa_samantha	Rh1AG075100 Rh1CG090400 Rh3AG144600 Rh5AG539900 Rh5BG565100 Rh5CG586900
rosa_wichuraiana	Rw2G018590 Rw5G048100 Rw5G050200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	395
Acc16I	TGCGCA	1 cut(s)	145
Acc36I	ACCTGC	1 cut(s)	395
AccI	GTMKAC	1 cut(s)	315
AclWI	GGATC	1 cut(s)	248
AcsI	RAATTY	1 cut(s)	5
AfeI	AGCGCT	1 cut(s)	150
AfiI	CCNNNNNNNGG	1 cut(s)	20
AgsI	TTSAA	3 cut(s)	37, 49, 386
AluBI	AGCT	1 cut(s)	292
AluI	AGCT	1 cut(s)	292
Alw21I	GWGCWC	1 cut(s)	424
Alw26I	GTCTC	1 cut(s)	198
AlwI	GGATC	1 cut(s)	248
Aor51HI	AGCGCT	1 cut(s)	150
ApeKI	GCWGC	2 cut(s)	146, 151
ApoI	RAATTY	1 cut(s)	5
AspLEI	GCGC	3 cut(s)	146, 151, 417
AsuHPI	GGTGA	2 cut(s)	206, 419
Bbv12I	GWGCWC	1 cut(s)	424
BbvI	GCAGC	2 cut(s)	138, 158
BccI	CCATC	1 cut(s)	185
BceAI	ACGGC	1 cut(s)	402
BcgI	CGANNNNNNTGC	2 cut(s)	198, 232
BcoDI	GTCTC	1 cut(s)	198
BfoI	RGCGCY	2 cut(s)	152, 418
BfuAI	ACCTGC	1 cut(s)	395
BisI	GCNGC	2 cut(s)	147, 152
BlsI	GCNGC	2 cut(s)	148, 153
BpuEI	CTTGAG	1 cut(s)	344
BsaI	GGTCTC	1 cut(s)	198
BsaJI	CCNNGG	2 cut(s)	76, 302
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
Bse3DI	GCAATG	1 cut(s)	139
BseDI	CCNNGG	2 cut(s)	76, 302
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseMI	GCAATG	1 cut(s)	139
BseXI	GCAGC	2 cut(s)	138, 158
BsgI	GTGCAG	1 cut(s)	380
BsiHKAI	GWGCWC	1 cut(s)	424
BslI	CCNNNNNNNGG	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	198
Bso31I	GGTCTC	1 cut(s)	198
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp143I	GATC	3 cut(s)	213, 222, 253
Bsp19I	CCATGG	1 cut(s)	76
BspMI	ACCTGC	1 cut(s)	395
BspPI	GGATC	1 cut(s)	248
BspQI	GCTCTTC	1 cut(s)	405
BspTNI	GGTCTC	1 cut(s)	198
BsrDI	GCAATG	1 cut(s)	139
BssECI	CCNNGG	2 cut(s)	76, 302
BssMI	GATC	3 cut(s)	213, 222, 253
BssT1I	CCWWGG	1 cut(s)	76
Bst4CI	ACNGT	1 cut(s)	313
Bst6I	CTCTTC	1 cut(s)	405
BstC8I	GCNNGC	3 cut(s)	100, 156, 424
BstDSI	CCRYGG	2 cut(s)	76, 302
BstH2I	RGCGCY	2 cut(s)	152, 418
BstHHI	GCGC	3 cut(s)	146, 151, 417
BstKTI	GATC	3 cut(s)	216, 225, 256
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	3 cut(s)	213, 222, 253
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 423
BstV1I	GCAGC	2 cut(s)	138, 158
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
BtgI	CCRYGG	2 cut(s)	76, 302
BveI	ACCTGC	1 cut(s)	395
Cac8I	GCNNGC	3 cut(s)	100, 156, 424
CfoI	GCGC	3 cut(s)	146, 151, 417
CviAII	CATG	1 cut(s)	77
CviJI	RGCY	4 cut(s)	31, 98, 292, 393
CviKI_1	RGCY	4 cut(s)	31, 98, 292, 393
DpnI	GATC	3 cut(s)	215, 224, 255
DpnII	GATC	3 cut(s)	213, 222, 253
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco130I	CCWWGG	1 cut(s)	76
Eco31I	GGTCTC	1 cut(s)	198
Eco47III	AGCGCT	1 cut(s)	150
EcoRI	GAATTC	1 cut(s)	5
EcoT14I	CCWWGG	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	1 cut(s)	80
FaiI	YATR	4 cut(s)	78, 270, 345, 369
FatI	CATG	1 cut(s)	76
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	2 cut(s)	147, 152
Fsp4HI	GCNGC	2 cut(s)	147, 152
FspI	TGCGCA	1 cut(s)	145
GlaI	GCGC	3 cut(s)	145, 150, 416
GluI	GCNGC	2 cut(s)	147, 152
HaeII	RGCGCY	2 cut(s)	152, 418
HhaI	GCGC	3 cut(s)	146, 151, 417
Hin1II	CATG	1 cut(s)	80
Hin6I	GCGC	3 cut(s)	144, 149, 415
HinP1I	GCGC	3 cut(s)	144, 149, 415
HinfI	GANTC	1 cut(s)	182
HphI	GGTGA	2 cut(s)	206, 419
Hpy166II	GTNNAC	2 cut(s)	110, 316
Hpy188I	TCNGA	2 cut(s)	65, 435
Hpy188III	TCNNGA	2 cut(s)	179, 323
Hpy8I	GTNNAC	2 cut(s)	110, 316
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4V	TGCA	4 cut(s)	219, 236, 277, 361
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 423
Hsp92II	CATG	1 cut(s)	80
HspAI	GCGC	3 cut(s)	144, 149, 415
Kzo9I	GATC	3 cut(s)	213, 222, 253
LguI	GCTCTTC	1 cut(s)	405
LpnPI	CCDG	5 cut(s)	6, 112, 183, 390, 407
Lsp1109I	GCAGC	2 cut(s)	138, 158
MalI	GATC	3 cut(s)	215, 224, 255
MboI	GATC	3 cut(s)	213, 222, 253
MboII	GAAGA	1 cut(s)	422
MflI	RGATCY	1 cut(s)	253
MhlI	GDGCHC	1 cut(s)	424
MluCI	AATT	3 cut(s)	5, 278, 340
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	3 cut(s)	64, 98, 328
MseI	TTAA	1 cut(s)	164
MteI	GCGCNGCGC	1 cut(s)	147
MwoI	GCNNNNNNNGC	2 cut(s)	155, 423
NcoI	CCATGG	1 cut(s)	76
NdeII	GATC	3 cut(s)	213, 222, 253
NlaIII	CATG	1 cut(s)	80
NsbI	TGCGCA	1 cut(s)	145
PaqCI	CACCTGC	1 cut(s)	395
PciSI	GCTCTTC	1 cut(s)	405
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PkrI	GCNGC	2 cut(s)	148, 153
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	253
SapI	GCTCTTC	1 cut(s)	405
SaqAI	TTAA	1 cut(s)	164
SatI	GCNGC	2 cut(s)	147, 152
Sau3AI	GATC	3 cut(s)	213, 222, 253
SchI	GAGTC	1 cut(s)	191
SduI	GDGCHC	1 cut(s)	424
SetI	ASST	4 cut(s)	44, 172, 294, 409
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	3 cut(s)	5, 278, 340
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	1 cut(s)	313
TaqI	TCGA	2 cut(s)	189, 295
TaqII	GACCGA	1 cut(s)	222
TasI	AATT	3 cut(s)	5, 278, 340
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TseI	GCWGC	2 cut(s)	146, 151
TspGWI	ACGGA	2 cut(s)	291, 346
XapI	RAATTY	1 cut(s)	5
XcmI	CCANNNNNNNNNTGG	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.