Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026864.1

Orthogroup ID

OG0001707

Physical Location & Seq

Genomic Coordinates Reverse (-)

2780 .. 3173

Gene Structure 394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026864.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atggccagattgatctctcagttgaagggacactttgtactcctctccatgcagaaatgcagtagtcatgttgttgaaaaatgcctcaagcactatgaagagagccgagcaaaagtcatccaggaattgctctcagtttctcactttgaacagctgttgcaagacccttatgctaactatgtcattcaatctgctctttcagttaccaagggccctcttcacgctgcactggttgaagctgtcaagcctcatacaatcttgcgccacagcccatattgcaagaggatcttcacaaaggacctcctgaagaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUF

Protein Analysis

104

Amino Acids

11.9

Weight (kDa)

9.51

Isoelectric Point (pI)

44.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56510 AT5G56510 AT5G56510 AT5G56510 AT5G56510 AT5G56510
fragaria_vesca	FvH4_3g45790 FvH4_3g45790 FvH4_3g45790 FvH4_3g45790
malus_domestica	MD03G1003000.v1.1 MD11G1002800.v1.1
prunus_persica	Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1
pyrus_communis	pycom03g00290 pycom03g00300 pycom11g00260
rosa_chinensis	RchiOBHm_Chr3g0468621 RchiOBHm_Chr5g0083871
rosa_laevigata	RLG00000037060
rosa_multiflora	Rmu_sc0001152.1_g000020 Rmu_sc0012873.1_g000001 Rmu_sc0014979.1_g000001 Rmu_sc0024007.1_g000007 Rmu_sc0026864.1_g000002
rosa_roxburghii	Rroxscaffold_1G00000720 Rroxscaffold_1G00026610 Rroxscaffold_3G00221790 Rroxscaffold_6G00406920 Rroxscaffold_6G00406930 Rroxscaffold_7G00203860
rosa_rugosa	Rorug05G0486900.1 Rorug05G0487000
rosa_samantha	Rh1AG075100 Rh1CG090400 Rh3AG144600 Rh5AG539900 Rh5BG565100 Rh5CG586900
rosa_wichuraiana	Rw2G018590 Rw5G048100 Rw5G050200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	293
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	39
AgsI	TTSAA	5 cut(s)	25, 77, 149, 188, 236
AjnI	CCWGG	1 cut(s)	120
AluBI	AGCT	2 cut(s)	154, 239
AluI	AGCT	2 cut(s)	154, 239
AlwI	GGATC	1 cut(s)	293
AoxI	GGCC	2 cut(s)	3, 211
ApaI	GGGCCC	1 cut(s)	215
ApeKI	GCWGC	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	264
AspS9I	GGNCC	3 cut(s)	211, 212, 298
AvaII	GGWCC	1 cut(s)	298
BaeGI	GKGCMC	1 cut(s)	215
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	211
BciT130I	CCWGG	1 cut(s)	122
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
Bme1390I	CCNGG	1 cut(s)	122
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	3 cut(s)	211, 212, 298
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	1 cut(s)	122
BpuEI	CTTGAG	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	207
Bse1I	ACTGG	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	1 cut(s)	117
BseMII	CTCAG	2 cut(s)	32, 147
BseNI	ACTGG	1 cut(s)	234
BseRI	GAGGAG	1 cut(s)	32
BseSI	GKGCMC	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	211
BsgI	GTGCAG	1 cut(s)	210
BshFI	GGCC	2 cut(s)	5, 213
BslFI	GGGAC	1 cut(s)	42
BsmFI	GGGAC	1 cut(s)	42
BsnI	GGCC	2 cut(s)	5, 213
Bsp120I	GGGCCC	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp143I	GATC	2 cut(s)	12, 285
BspANI	GGCC	2 cut(s)	5, 213
BspCNI	CTCAG	2 cut(s)	31, 146
BspLI	GGNNCC	1 cut(s)	213
BspPI	GGATC	1 cut(s)	293
BsrI	ACTGG	1 cut(s)	234
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	2 cut(s)	12, 285
BssT1I	CCWWGG	1 cut(s)	207
Bst2UI	CCWGG	1 cut(s)	122
Bst6I	CTCTTC	2 cut(s)	93, 222
BstDEI	CTNAG	2 cut(s)	18, 133
BstF5I	GGATG	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	264
BstKTI	GATC	2 cut(s)	15, 288
BstMBI	GATC	2 cut(s)	12, 285
BstMWI	GCNNNNNNNGC	1 cut(s)	276
BstNI	CCWGG	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	120
BstSLI	GKGCMC	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	211
BstX2I	RGATCY	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	285
BsuRI	GGCC	2 cut(s)	5, 213
BtsCI	GGATG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	227
CfoI	GCGC	1 cut(s)	264
Cfr13I	GGNCC	3 cut(s)	211, 212, 298
Csp6I	GTAC	1 cut(s)	38
CviAII	CATG	2 cut(s)	49, 68
CviJI	RGCY	7 cut(s)	5, 105, 154, 213, 239, 247, 270
CviKI_1	RGCY	7 cut(s)	5, 105, 154, 213, 239, 247, 270
CviQI	GTAC	1 cut(s)	38
DdeI	CTNAG	2 cut(s)	18, 133
DpnI	GATC	2 cut(s)	14, 287
DpnII	GATC	2 cut(s)	12, 285
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	93, 222
EarI	CTCTTC	2 cut(s)	93, 222
Eco130I	CCWWGG	1 cut(s)	207
Eco24I	GRGCYC	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	298
EcoO109I	RGGNCCY	3 cut(s)	211, 212, 298
EcoRII	CCWGG	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	215
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	2 cut(s)	52, 71
FaiI	YATR	7 cut(s)	50, 69, 96, 171, 180, 252, 274
FalI	AAGNNNNNCTT	4 cut(s)	17, 49, 272, 304
FaqI	GGGAC	1 cut(s)	42
FatI	CATG	2 cut(s)	48, 67
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	1 cut(s)	104
FriOI	GRGCYC	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	225
GlaI	GCGC	1 cut(s)	263
GluI	GCNGC	1 cut(s)	225
HaeIII	GGCC	2 cut(s)	5, 213
HhaI	GCGC	1 cut(s)	264
Hin1II	CATG	2 cut(s)	52, 71
Hin6I	GCGC	1 cut(s)	262
HinP1I	GCGC	1 cut(s)	262
Hpy188III	TCNNGA	1 cut(s)	304
HpyAV	CCTTC	1 cut(s)	19
HpyCH4V	TGCA	5 cut(s)	52, 60, 160, 227, 279
HpyF10VI	GCNNNNNNNGC	1 cut(s)	276
HpyF3I	CTNAG	2 cut(s)	18, 133
Hsp92II	CATG	2 cut(s)	52, 71
HspAI	GCGC	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	12, 285
LpnPI	CCDG	4 cut(s)	19, 107, 134, 215
Lsp1109I	GCAGC	1 cut(s)	211
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	2 cut(s)	14, 287
MboI	GATC	2 cut(s)	12, 285
MboII	GAAGA	3 cut(s)	110, 209, 280
MflI	RGATCY	1 cut(s)	285
MhlI	GDGCHC	1 cut(s)	215
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	125
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	6 cut(s)	53, 95, 225, 258, 276, 311
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	154
MspR9I	CCNGG	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	1 cut(s)	276
NdeII	GATC	2 cut(s)	12, 285
NlaIII	CATG	2 cut(s)	52, 71
NlaIV	GGNNCC	1 cut(s)	213
NmeAIII	GCCGAG	1 cut(s)	131
PfoI	TCCNGGA	1 cut(s)	120
PkrI	GCNGC	1 cut(s)	226
PpuMI	RGGWCCY	1 cut(s)	298
Psp5II	RGGWCCY	1 cut(s)	298
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	213
PspOMI	GGGCCC	1 cut(s)	211
PspPI	GGNCC	3 cut(s)	211, 212, 298
PspPPI	RGGWCCY	1 cut(s)	298
PsuI	RGATCY	1 cut(s)	285
PvuII	CAGCTG	1 cut(s)	154
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	2 cut(s)	12, 285
Sau96I	GGNCC	3 cut(s)	211, 212, 298
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	1 cut(s)	215
SetI	ASST	3 cut(s)	156, 241, 303
SinI	GGWCC	1 cut(s)	298
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	1 cut(s)	125
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	207
TasI	AATT	1 cut(s)	125
TatI	WGTACW	1 cut(s)	37
TscAI	CASTG	1 cut(s)	234
TseI	GCWGC	1 cut(s)	224
TspDTI	ATGAA	1 cut(s)	111
TspRI	CASTG	1 cut(s)	234
VpaK11BI	GGWCC	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.