Rh1AG075100

pumilio homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001707
Physical Location & Seq
Reverse (-)
12401257 .. 12404608
3352 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG075100.1

Sequence Viewer

Length: 981 bp
ATGTTGGAGCTCCATTTCCGCCATGATGACCCCTATTCGCATCCTGCATTTGGAGACCTTCGTCCCTGCAACAGTTTTCTGCTTAAAATATCTAAAACTAAGTCTGCTGGTGGACAAAACGATCAAGTTTCCGTGCAAGATGCACATAACTTGGATACTTCTATACAGTTAACTCAACCTGAAAGTGACTTACTTGATGGCAAACAACCTGCAACTGATCAATACCGAATCACTGAATCGGTGCTCTGCATCAATTCCGAATTTCAAAGGTTTTTGAGGTCGATTTGGACAAGGGCTGTTCAAAAGGTTATTGAAACCCTCAAAACTCCAGAGCGGTTTTCCATGGTTGTTTCCTCACTAAAGCCTGGGATAGTGAACTTGATAAAGAACACAAATGGCAACCACGTTGCGCAGCGCTGCTTGCAGTATTTAACACCTGAATATCGTGAGTTTCTTTTTGAAGCTGCAACTAGTAATTGTGTTGAGCTTGCAACCGACCGTCATGGCTGTTGTGTGCTTCAAAAATGTCTTAGTCATTCTGATGGTGAGCAAAGAGACCGATTGATCTGCAAGATCACTTCCAATGCACTAATCCTTTCCCAAGATCCATTTGGGAACTATGTCGTGCAATTCGTCTTTGAGCTTCAGCTTCCGTGGGAGACAGTAGACATTCTTGAGCAGTTGGAGGGTAATTATGGGGATTTGTCTGTGCAGAAGTATAGCAGTAATGTGGTTGAAAAAAGCCTGAAATACGCAGGTGAAGAGCGCCGTGCTCGCATTATTCAGGAACTGATAGGGAATATGCGATTGGACCAAATCATGCAAGACCCTTATGGCAATTATGTTATCCAAGCAGCACTCAGTCAATCAAAGGGAACACTTCATTCTAAACTGGTAGAAGCAATAAAACCTCATATGCCAGTTCTCCGGACCAGTCCCTATGGGAAGAAAATCCTCTCTACCAATATTTTGAAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUF

Protein Analysis

326

Amino Acids

36.99

Weight (kDa)

7.1

Isoelectric Point (pI)

31.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tau95_N PF17682 2 - 55 1.1e-07 Tau95 Triple barrel domain
PUF PF00806 124 - 154 4.1e-06 Pumilio-family RNA binding repeat
PUF PF00806 159 - 193 5.5e-16 Pumilio-family RNA binding repeat
PUF PF00806 232 - 265 5.7e-07 Pumilio-family RNA binding repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 746
Acc16I TGCGCA 1 cut(s) 411
Acc36I ACCTGC 2 cut(s) 217, 746
AccBSI CCGCTC 1 cut(s) 334
AccI GTMKAC 1 cut(s) 666
AccIII TCCGGA 1 cut(s) 927
AciI CCGC 2 cut(s) 19, 334
AclWI GGATC 1 cut(s) 599
AcsI RAATTY 1 cut(s) 260
AcuI CTGAAG 1 cut(s) 629
AfeI AGCGCT 1 cut(s) 416
AfiI CCNNNNNNNGG 1 cut(s) 50
AgsI TTSAA 7 cut(s) 266, 302, 314, 461, 521, 737, 973
AhlI ACTAGT 1 cut(s) 470
AjnI CCWGG 1 cut(s) 364
AjuI GAANNNNNNNTTGG 2 cut(s) 791, 823
AluBI AGCT 5 cut(s) 10, 464, 487, 643, 649
AluI AGCT 5 cut(s) 10, 464, 487, 643, 649
Alw21I GWGCWC 3 cut(s) 12, 246, 775
Alw26I GTCTC 3 cut(s) 48, 549, 653
AlwI GGATC 1 cut(s) 599
AlwNI CAGNNNCTG 1 cut(s) 790
Aor13HI TCCGGA 1 cut(s) 927
Aor51HI AGCGCT 1 cut(s) 416
ApeKI GCWGC 4 cut(s) 412, 417, 464, 854
ApoI RAATTY 1 cut(s) 260
AspLEI GCGC 3 cut(s) 412, 417, 768
AspS9I GGNCC 2 cut(s) 811, 930
AsuHPI GGTGA 2 cut(s) 557, 770
AvaII GGWCC 2 cut(s) 811, 930
BanII GRGCYC 1 cut(s) 12
Bbv12I GWGCWC 3 cut(s) 12, 246, 775
BbvI GCAGC 4 cut(s) 404, 424, 451, 866
BccI CCATC 2 cut(s) 191, 536
BceAI ACGGC 1 cut(s) 753
BcgI CGANNNNNNTGC 2 cut(s) 549, 583
BciT130I CCWGG 1 cut(s) 366
BciVI GTATCC 1 cut(s) 148
BclI TGATCA 1 cut(s) 217
BcoDI GTCTC 3 cut(s) 48, 549, 653
BcuI ACTAGT 1 cut(s) 470
BfaI CTAG 1 cut(s) 471
BfoI RGCGCY 2 cut(s) 418, 769
BfuAI ACCTGC 2 cut(s) 217, 746
BfuI GTATCC 1 cut(s) 148
BisI GCNGC 4 cut(s) 413, 418, 465, 855
BlsI GCNGC 4 cut(s) 414, 419, 466, 856
Bme1390I CCNGG 1 cut(s) 366
Bme18I GGWCC 2 cut(s) 811, 930
BmgT120I GGNCC 2 cut(s) 811, 930
BmrFI CCNGG 1 cut(s) 366
BmsI GCATC 3 cut(s) 49, 130, 258
BoxI GACNNNNGTC 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 695
BsaI GGTCTC 2 cut(s) 48, 549
BsaJI CCNNGG 3 cut(s) 342, 365, 653
BsaWI WCCGGW 1 cut(s) 927
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse1I ACTGG 3 cut(s) 897, 920, 933
BseAI TCCGGA 1 cut(s) 927
BseBI CCWGG 1 cut(s) 366
BseDI CCNNGG 3 cut(s) 342, 365, 653
BseGI GGATG 1 cut(s) 40
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMII CTCAG 1 cut(s) 874
BseNI ACTGG 3 cut(s) 897, 920, 933
BseXI GCAGC 4 cut(s) 404, 424, 451, 866
BsgI GTGCAG 1 cut(s) 731
Bsh1285I CGRYCG 1 cut(s) 499
BsiEI CGRYCG 1 cut(s) 499
BsiHKAI GWGCWC 3 cut(s) 12, 246, 775
BsiSI CCGG 1 cut(s) 928
BslFI GGGAC 2 cut(s) 48, 921
BslI CCNNNNNNNGG 1 cut(s) 50
BsmAI GTCTC 3 cut(s) 48, 549, 653
BsmFI GGGAC 2 cut(s) 48, 921
Bso31I GGTCTC 2 cut(s) 48, 549
Bsp1286I GDGCHC 3 cut(s) 12, 246, 775
Bsp13I TCCGGA 1 cut(s) 927
Bsp143I GATC 5 cut(s) 121, 217, 564, 573, 604
Bsp19I CCATGG 1 cut(s) 342
BspACI CCGC 2 cut(s) 19, 334
BspCNI CTCAG 1 cut(s) 873
BspEI TCCGGA 1 cut(s) 927
BspMI ACCTGC 2 cut(s) 217, 746
BspPI GGATC 1 cut(s) 599
BspQI GCTCTTC 1 cut(s) 756
BspTNI GGTCTC 2 cut(s) 48, 549
BsrBI CCGCTC 1 cut(s) 334
BsrI ACTGG 3 cut(s) 897, 920, 933
BssECI CCNNGG 3 cut(s) 342, 365, 653
BssMI GATC 5 cut(s) 121, 217, 564, 573, 604
BssT1I CCWWGG 1 cut(s) 342
Bst2UI CCWGG 1 cut(s) 366
Bst4CI ACNGT 4 cut(s) 74, 168, 500, 664
Bst6I CTCTTC 1 cut(s) 756
BstC8I GCNNGC 3 cut(s) 422, 489, 775
BstDEI CTNAG 3 cut(s) 99, 530, 860
BstDSI CCRYGG 2 cut(s) 342, 653
BstF5I GGATG 1 cut(s) 40
BstH2I RGCGCY 2 cut(s) 418, 769
BstHHI GCGC 3 cut(s) 412, 417, 768
BstKTI GATC 5 cut(s) 124, 220, 567, 576, 607
BstMAI GTCTC 3 cut(s) 48, 549, 653
BstMBI GATC 5 cut(s) 121, 217, 564, 573, 604
BstMCI CGRYCG 1 cut(s) 499
BstMWI GCNNNNNNNGC 2 cut(s) 421, 774
BstNI CCWGG 1 cut(s) 366
BstPAI GACNNNNGTC 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 364
BstV1I GCAGC 4 cut(s) 404, 424, 451, 866
BstX2I RGATCY 1 cut(s) 604
BstYI RGATCY 1 cut(s) 604
BsuI GTATCC 1 cut(s) 148
BtgI CCRYGG 2 cut(s) 342, 653
BtsCI GGATG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 231
BveI ACCTGC 2 cut(s) 217, 746
Cac8I GCNNGC 3 cut(s) 422, 489, 775
CaiI CAGNNNCTG 1 cut(s) 790
CfoI GCGC 3 cut(s) 412, 417, 768
Cfr13I GGNCC 2 cut(s) 811, 930
CviAII CATG 4 cut(s) 23, 343, 503, 820
CviJI RGCY 9 cut(s) 10, 296, 364, 464, 487, 507, 643, 649, 744
CviKI_1 RGCY 9 cut(s) 10, 296, 364, 464, 487, 507, 643, 649, 744
DdeI CTNAG 3 cut(s) 99, 530, 860
DpnI GATC 5 cut(s) 123, 219, 566, 575, 606
DpnII GATC 5 cut(s) 121, 217, 564, 573, 604
Eam1104I CTCTTC 1 cut(s) 756
EarI CTCTTC 1 cut(s) 756
EciI GGCGGA 1 cut(s) 8
Ecl136II GAGCTC 1 cut(s) 10
Eco130I CCWWGG 1 cut(s) 342
Eco24I GRGCYC 1 cut(s) 12
Eco31I GGTCTC 2 cut(s) 48, 549
Eco47I GGWCC 2 cut(s) 811, 930
Eco47III AGCGCT 1 cut(s) 416
Eco53kI GAGCTC 1 cut(s) 10
Eco57I CTGAAG 1 cut(s) 629
EcoICRI GAGCTC 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 342
EcoT38I GRGCYC 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 4 cut(s) 26, 346, 506, 823
FaqI GGGAC 2 cut(s) 48, 921
FatI CATG 4 cut(s) 22, 342, 502, 819
FauNDI CATATG 1 cut(s) 915
FbaI TGATCA 1 cut(s) 217
FblI GTMKAC 1 cut(s) 666
Fnu4HI GCNGC 4 cut(s) 413, 418, 465, 855
FokI GGATG 1 cut(s) 27
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 4 cut(s) 413, 418, 465, 855
FspBI CTAG 1 cut(s) 471
FspI TGCGCA 1 cut(s) 411
GlaI GCGC 3 cut(s) 411, 416, 767
GluI GCNGC 4 cut(s) 413, 418, 465, 855
GsuI CTGGAG 1 cut(s) 312
HaeII RGCGCY 2 cut(s) 418, 769
HapII CCGG 1 cut(s) 928
HhaI GCGC 3 cut(s) 412, 417, 768
Hin1II CATG 4 cut(s) 26, 346, 506, 823
Hin6I GCGC 3 cut(s) 410, 415, 766
HinP1I GCGC 3 cut(s) 410, 415, 766
HincII GTYRAC 1 cut(s) 171
HindII GTYRAC 1 cut(s) 171
HinfI GANTC 2 cut(s) 228, 236
HpaI GTTAAC 1 cut(s) 171
HpaII CCGG 1 cut(s) 928
HphI GGTGA 2 cut(s) 557, 770
Hpy166II GTNNAC 4 cut(s) 113, 171, 376, 667
Hpy188I TCNGA 2 cut(s) 259, 541
Hpy188III TCNNGA 5 cut(s) 329, 446, 674, 785, 928
Hpy8I GTNNAC 4 cut(s) 113, 171, 376, 667
HpyAV CCTTC 1 cut(s) 68
HpyCH4III ACNGT 4 cut(s) 74, 168, 500, 664
HpyCH4IV ACGT 1 cut(s) 405
HpyF10VI GCNNNNNNNGC 2 cut(s) 421, 774
HpyF3I CTNAG 3 cut(s) 99, 530, 860
HpySE526I ACGT 1 cut(s) 405
Hsp92II CATG 4 cut(s) 26, 346, 506, 823
HspAI GCGC 3 cut(s) 410, 415, 766
Kpn2I TCCGGA 1 cut(s) 927
Ksp22I TGATCA 1 cut(s) 217
KspAI GTTAAC 1 cut(s) 171
Kzo9I GATC 5 cut(s) 121, 217, 564, 573, 604
LguI GCTCTTC 1 cut(s) 756
LmnI GCTCC 2 cut(s) 7, 15
Lsp1109I GCAGC 4 cut(s) 404, 424, 451, 866
LweI GCATC 3 cut(s) 49, 130, 258
MaeI CTAG 1 cut(s) 471
MaeII ACGT 1 cut(s) 405
MaeIII GTNAC 1 cut(s) 185
MalI GATC 5 cut(s) 123, 219, 566, 575, 606
MbiI CCGCTC 1 cut(s) 334
MboI GATC 5 cut(s) 121, 217, 564, 573, 604
MboII GAAGA 2 cut(s) 773, 958
MflI RGATCY 1 cut(s) 604
MhlI GDGCHC 3 cut(s) 12, 246, 775
MluCI AATT 6 cut(s) 253, 260, 475, 629, 691, 838
MmeI TCCRAC 1 cut(s) 663
MnlI CCTC 6 cut(s) 270, 329, 364, 679, 921, 965
MroI TCCGGA 1 cut(s) 927
MseI TTAA 3 cut(s) 84, 170, 431
MslI CAYNNNNRTG 1 cut(s) 540
MspI CCGG 1 cut(s) 928
MspR9I CCNGG 1 cut(s) 366
MteI GCGCNGCGC 1 cut(s) 413
MvaI CCWGG 1 cut(s) 366
MwoI GCNNNNNNNGC 2 cut(s) 421, 774
NcoI CCATGG 1 cut(s) 342
NdeI CATATG 1 cut(s) 915
NdeII GATC 5 cut(s) 121, 217, 564, 573, 604
NlaIII CATG 4 cut(s) 26, 346, 506, 823
NmuCI GTSAC 1 cut(s) 185
NsbI TGCGCA 1 cut(s) 411
PaqCI CACCTGC 1 cut(s) 746
PciSI GCTCTTC 1 cut(s) 756
PcsI WCGNNNNNNNCGW 1 cut(s) 630
PfeI GAWTC 2 cut(s) 228, 236
PkrI GCNGC 4 cut(s) 414, 419, 466, 856
PshAI GACNNNNGTC 1 cut(s) 60
Psp124BI GAGCTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 364
PspGI CCWGG 1 cut(s) 364
PspPI GGNCC 2 cut(s) 811, 930
PstNI CAGNNNCTG 1 cut(s) 790
PsuI RGATCY 1 cut(s) 604
RseI CAYNNNNRTG 1 cut(s) 540
SacI GAGCTC 1 cut(s) 12
SapI GCTCTTC 1 cut(s) 756
SaqAI TTAA 3 cut(s) 84, 170, 431
SatI GCNGC 4 cut(s) 413, 418, 465, 855
Sau3AI GATC 5 cut(s) 121, 217, 564, 573, 604
Sau96I GGNCC 2 cut(s) 811, 930
ScrFI CCNGG 1 cut(s) 366
SduI GDGCHC 3 cut(s) 12, 246, 775
SfaNI GCATC 3 cut(s) 49, 130, 258
SinI GGWCC 2 cut(s) 811, 930
SmiMI CAYNNNNRTG 1 cut(s) 540
SmlI CTYRAG 1 cut(s) 674
SmoI CTYRAG 1 cut(s) 674
SpeI ACTAGT 1 cut(s) 470
Sse9I AATT 6 cut(s) 253, 260, 475, 629, 691, 838
SsiI CCGC 2 cut(s) 19, 334
SspI AATATT 1 cut(s) 967
SspMI CTAG 1 cut(s) 471
SstI GAGCTC 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 364
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 4 cut(s) 74, 168, 500, 664
TaiI ACGT 1 cut(s) 408
TaqI TCGA 1 cut(s) 281
TaqII GACCGA 1 cut(s) 573
TasI AATT 6 cut(s) 253, 260, 475, 629, 691, 838
TfiI GAWTC 2 cut(s) 228, 236
Tru1I TTAA 3 cut(s) 84, 170, 431
Tru9I TTAA 3 cut(s) 84, 170, 431
TscAI CASTG 1 cut(s) 238
TseFI GTSAC 1 cut(s) 185
TseI GCWGC 4 cut(s) 412, 417, 464, 854
Tsp45I GTSAC 1 cut(s) 185
TspDTI ATGAA 1 cut(s) 872
TspGWI ACGGA 2 cut(s) 121, 642
TspRI CASTG 1 cut(s) 238
VpaK11BI GGWCC 2 cut(s) 811, 930
XapI RAATTY 1 cut(s) 260
XcmI CCANNNNNNNNNTGG 1 cut(s) 608
XmiI GTMKAC 1 cut(s) 666
XspI CTAG 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.