Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001707

Physical Location & Seq

Genomic Coordinates Reverse (-)

33533213 .. 33534457

Gene Structure 1245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00026610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGTTGTTTCCTCACTAAAGCCTGGGATAGTGAACTTGATAAAGAACACAAATGGCAACCACATTGCGCAGCCGCTTGCGTATTTAACACCCGAATATCGTGAGTTTCTTTTTGAAGCTGCAACTAGTAATTGTGTTGAGCTTGCAACCGACCGTCATGGCTGTTGTGTGCTTCAAAAATGTCTTAGTCATTCCGATGGTGAGCAAAGAGACCGATTGATCCGCAAGATCACTTCCAATGCACTAATCCTTTCCCAAGATCCATTTGGTTGGGAGGGTAATTATGGGGATTTGTCCGTGCAGAAGTATAGCAGTAATGTGGTTGAAAAAAGCCCGAAATACGCAGTGAAGAGCGCCGTGCTCGCATTATTCAGAACCGATAGGGAATATGCGATTGGACCAAATCATGCAAGACCCTTATGGCAATTATGTTATCCAAGCAAGCACTCGGTCAATCAAAGGTCGGTAAATGCATTACAAGTCTATGTTATTTGTATTTGTTACACCGCAGTTGTTATATCTCGATTTGTGAGTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUF zf-CCCH

Protein Analysis

179

Amino Acids

20.01

Weight (kDa)

8.84

Isoelectric Point (pI)

28.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUF	PF00806	44 - 78	8.4e-17	Pumilio-family RNA binding repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56510 AT5G56510 AT5G56510 AT5G56510 AT5G56510 AT5G56510
fragaria_vesca	FvH4_3g45790 FvH4_3g45790 FvH4_3g45790 FvH4_3g45790
malus_domestica	MD03G1003000.v1.1 MD11G1002800.v1.1
prunus_persica	Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1
pyrus_communis	pycom03g00290 pycom03g00300 pycom11g00260
rosa_chinensis	RchiOBHm_Chr3g0468621 RchiOBHm_Chr5g0083871
rosa_laevigata	RLG00000037060
rosa_multiflora	Rmu_sc0001152.1_g000020 Rmu_sc0012873.1_g000001 Rmu_sc0014979.1_g000001 Rmu_sc0024007.1_g000007 Rmu_sc0026864.1_g000002
rosa_roxburghii	Rroxscaffold_1G00000720 Rroxscaffold_1G00026610 Rroxscaffold_3G00221790 Rroxscaffold_6G00406920 Rroxscaffold_6G00406930 Rroxscaffold_7G00203860
rosa_rugosa	Rorug05G0486900.1 Rorug05G0487000
rosa_samantha	Rh1AG075100 Rh1CG090400 Rh3AG144600 Rh5AG539900 Rh5BG565100 Rh5CG586900
rosa_wichuraiana	Rw2G018590 Rw5G048100 Rw5G050200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	69
AciI	CCGC	3 cut(s)	74, 223, 507
AclWI	GGATC	2 cut(s)	214, 254
AgsI	TTSAA	3 cut(s)	116, 176, 326
AhlI	ACTAGT	1 cut(s)	125
AjnI	CCWGG	1 cut(s)	22
AjuI	GAANNNNNNNTTGG	2 cut(s)	378, 410
AluBI	AGCT	2 cut(s)	119, 142
AluI	AGCT	2 cut(s)	119, 142
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	1 cut(s)	204
AlwI	GGATC	2 cut(s)	214, 254
ApeKI	GCWGC	2 cut(s)	70, 119
AspLEI	GCGC	2 cut(s)	70, 356
AspS9I	GGNCC	1 cut(s)	398
AsuHPI	GGTGA	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	398
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	2 cut(s)	82, 106
BccI	CCATC	1 cut(s)	191
BceAI	ACGGC	1 cut(s)	341
BciT130I	CCWGG	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	204
BcuI	ACTAGT	1 cut(s)	125
BfaI	CTAG	1 cut(s)	126
BfoI	RGCGCY	1 cut(s)	357
BisI	GCNGC	3 cut(s)	71, 74, 120
BlsI	GCNGC	3 cut(s)	72, 75, 121
Bme1390I	CCNGG	1 cut(s)	24
Bme18I	GGWCC	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	398
BmrFI	CCNGG	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	23
Bse3DI	GCAATG	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	1 cut(s)	23
BseMI	GCAATG	1 cut(s)	63
BseXI	GCAGC	2 cut(s)	82, 106
BsgI	GTGCAG	1 cut(s)	320
Bsh1285I	CGRYCG	1 cut(s)	154
BsiEI	CGRYCG	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	363
BsmAI	GTCTC	1 cut(s)	204
Bso31I	GGTCTC	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	3 cut(s)	219, 228, 259
BspACI	CCGC	3 cut(s)	74, 223, 507
BspPI	GGATC	2 cut(s)	214, 254
BspQI	GCTCTTC	1 cut(s)	344
BspTNI	GGTCTC	1 cut(s)	204
BsrDI	GCAATG	1 cut(s)	63
BssECI	CCNNGG	1 cut(s)	23
BssMI	GATC	3 cut(s)	219, 228, 259
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	155
Bst6I	CTCTTC	1 cut(s)	344
BstC8I	GCNNGC	4 cut(s)	78, 144, 363, 443
BstDEI	CTNAG	1 cut(s)	185
BstH2I	RGCGCY	1 cut(s)	357
BstHHI	GCGC	2 cut(s)	70, 356
BstKTI	GATC	3 cut(s)	222, 231, 262
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	3 cut(s)	219, 228, 259
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstNI	CCWGG	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	22
BstV1I	GCAGC	2 cut(s)	82, 106
BstX2I	RGATCY	1 cut(s)	259
BstXI	CCANNNNNNTGG	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	259
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	1 cut(s)	351
Cac8I	GCNNGC	4 cut(s)	78, 144, 363, 443
CfoI	GCGC	2 cut(s)	70, 356
Cfr13I	GGNCC	1 cut(s)	398
CviAII	CATG	2 cut(s)	158, 407
CviJI	RGCY	6 cut(s)	22, 73, 119, 142, 162, 333
CviKI_1	RGCY	6 cut(s)	22, 73, 119, 142, 162, 333
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	3 cut(s)	221, 230, 261
DpnII	GATC	3 cut(s)	219, 228, 259
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
Eco31I	GGTCTC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	398
EcoRII	CCWGG	1 cut(s)	22
EcoT22I	ATGCAT	1 cut(s)	475
FaeI	CATG	2 cut(s)	161, 410
FatI	CATG	2 cut(s)	157, 406
Fnu4HI	GCNGC	3 cut(s)	71, 74, 120
Fsp4HI	GCNGC	3 cut(s)	71, 74, 120
FspBI	CTAG	1 cut(s)	126
FspI	TGCGCA	1 cut(s)	69
GlaI	GCGC	2 cut(s)	69, 355
GluI	GCNGC	3 cut(s)	71, 74, 120
HaeII	RGCGCY	1 cut(s)	357
HhaI	GCGC	2 cut(s)	70, 356
Hin1II	CATG	2 cut(s)	161, 410
Hin6I	GCGC	2 cut(s)	68, 354
HinP1I	GCGC	2 cut(s)	68, 354
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	2 cut(s)	196, 374
Hpy188III	TCNNGA	2 cut(s)	101, 522
Hpy8I	GTNNAC	1 cut(s)	34
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4V	TGCA	7 cut(s)	122, 146, 242, 301, 410, 473, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	1 cut(s)	185
Hsp92II	CATG	2 cut(s)	161, 410
HspAI	GCGC	2 cut(s)	68, 354
Kzo9I	GATC	3 cut(s)	219, 228, 259
LguI	GCTCTTC	1 cut(s)	344
LpnPI	CCDG	2 cut(s)	9, 36
Lsp1109I	GCAGC	2 cut(s)	82, 106
MaeI	CTAG	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	500
MalI	GATC	3 cut(s)	221, 230, 261
MboI	GATC	3 cut(s)	219, 228, 259
MboII	GAAGA	1 cut(s)	361
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	3 cut(s)	130, 280, 425
MnlI	CCTC	2 cut(s)	22, 268
Mph1103I	ATGCAT	1 cut(s)	475
MseI	TTAA	1 cut(s)	86
MslI	CAYNNNNRTG	1 cut(s)	195
MspR9I	CCNGG	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	1 cut(s)	362
NdeII	GATC	3 cut(s)	219, 228, 259
NlaIII	CATG	2 cut(s)	161, 410
NsbI	TGCGCA	1 cut(s)	69
NsiI	ATGCAT	1 cut(s)	475
PciSI	GCTCTTC	1 cut(s)	344
PkrI	GCNGC	3 cut(s)	72, 75, 121
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspPI	GGNCC	1 cut(s)	398
PsuI	RGATCY	1 cut(s)	259
RseI	CAYNNNNRTG	1 cut(s)	195
SapI	GCTCTTC	1 cut(s)	344
SaqAI	TTAA	1 cut(s)	86
SatI	GCNGC	3 cut(s)	71, 74, 120
Sau3AI	GATC	3 cut(s)	219, 228, 259
Sau96I	GGNCC	1 cut(s)	398
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	1 cut(s)	363
SetI	ASST	3 cut(s)	121, 144, 464
SinI	GGWCC	1 cut(s)	398
SmiMI	CAYNNNNRTG	1 cut(s)	195
SpeI	ACTAGT	1 cut(s)	125
Sse9I	AATT	3 cut(s)	130, 280, 425
SsiI	CCGC	3 cut(s)	74, 223, 507
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	22
TaaI	ACNGT	1 cut(s)	155
TaqI	TCGA	1 cut(s)	523
TaqII	GACCGA	2 cut(s)	228, 439
TasI	AATT	3 cut(s)	130, 280, 425
TauI	GCSGC	1 cut(s)	76
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TscAI	CASTG	1 cut(s)	351
TseI	GCWGC	2 cut(s)	70, 119
TspGWI	ACGGA	1 cut(s)	286
TspRI	CASTG	1 cut(s)	351
VpaK11BI	GGWCC	1 cut(s)	398
XcmI	CCANNNNNNNNNTGG	1 cut(s)	263
XspI	CTAG	1 cut(s)	126
Zsp2I	ATGCAT	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.