Rmu_sc0014979.1_g000001

pumilio homolog

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014979.1
Physical Location & Seq
Reverse (-)
1 .. 569
569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014979.1_g000001.1.cds

Sequence Viewer

Length: 288 bp
atgagcccgtgttacactgttgattatcagaactatgtcgtgcaattcgtctttgagcttcagcttccgtgggcgacagtagacattcttgagcagttggagggtaattatggggatttgtctgtgcagaagtatagcagtaatgtggttgaaaaaagcctgaaatacgcaggtgaagagcgccgtgctcgcattattcaggaactgatagggaatatgcgattggaccaaatcatgcaagacccttatggcaattatgttatccaagcagcactcagtcaatcaaag
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

96

Amino Acids

11.1

Weight (kDa)

4.61

Isoelectric Point (pI)

37.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 161
Acc36I ACCTGC 1 cut(s) 161
AccI GTMKAC 1 cut(s) 81
AcuI CTGAAG 1 cut(s) 44
AgsI TTSAA 1 cut(s) 152
AjuI GAANNNNNNNTTGG 2 cut(s) 206, 238
AluBI AGCT 2 cut(s) 58, 64
AluI AGCT 2 cut(s) 58, 64
Alw21I GWGCWC 1 cut(s) 190
AlwNI CAGNNNCTG 1 cut(s) 205
ApeKI GCWGC 1 cut(s) 269
AspLEI GCGC 1 cut(s) 183
AspS9I GGNCC 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 185
AvaII GGWCC 1 cut(s) 226
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 190
BbvI GCAGC 1 cut(s) 281
BceAI ACGGC 1 cut(s) 168
BfoI RGCGCY 1 cut(s) 184
BfuAI ACCTGC 1 cut(s) 161
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
Bme18I GGWCC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 226
BpuEI CTTGAG 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 68
BseDI CCNNGG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 281
BsgI GTGCAG 1 cut(s) 146
BsiHKAI GWGCWC 1 cut(s) 190
Bsp1286I GDGCHC 2 cut(s) 8, 190
BspCNI CTCAG 1 cut(s) 288
BspMI ACCTGC 1 cut(s) 161
BspQI GCTCTTC 1 cut(s) 171
BssECI CCNNGG 1 cut(s) 68
Bst4CI ACNGT 2 cut(s) 19, 79
Bst6I CTCTTC 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 1 cut(s) 275
BstDSI CCRYGG 1 cut(s) 68
BstH2I RGCGCY 1 cut(s) 184
BstHHI GCGC 1 cut(s) 183
BstMWI GCNNNNNNNGC 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 281
BtgI CCRYGG 1 cut(s) 68
BtsIMutI CAGTG 1 cut(s) 15
BveI ACCTGC 1 cut(s) 161
Cac8I GCNNGC 1 cut(s) 190
CaiI CAGNNNCTG 1 cut(s) 205
CfoI GCGC 1 cut(s) 183
Cfr13I GGNCC 1 cut(s) 226
CviAII CATG 1 cut(s) 235
CviJI RGCY 4 cut(s) 6, 58, 64, 159
CviKI_1 RGCY 4 cut(s) 6, 58, 64, 159
DdeI CTNAG 1 cut(s) 275
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 44
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 1 cut(s) 238
FaiI YATR 7 cut(s) 36, 111, 135, 218, 236, 249, 258
FatI CATG 1 cut(s) 234
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 1 cut(s) 270
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 270
GlaI GCGC 1 cut(s) 182
GluI GCNGC 1 cut(s) 270
HaeII RGCGCY 1 cut(s) 184
HhaI GCGC 1 cut(s) 183
Hin1II CATG 1 cut(s) 238
Hin6I GCGC 1 cut(s) 181
HinP1I GCGC 1 cut(s) 181
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 2 cut(s) 89, 200
Hpy8I GTNNAC 1 cut(s) 82
HpyCH4III ACNGT 2 cut(s) 19, 79
HpyCH4V TGCA 3 cut(s) 43, 127, 238
HpyF10VI GCNNNNNNNGC 1 cut(s) 189
HpyF3I CTNAG 1 cut(s) 275
Hsp92II CATG 1 cut(s) 238
HspAI GCGC 1 cut(s) 181
LguI GCTCTTC 1 cut(s) 171
LpnPI CCDG 3 cut(s) 156, 173, 185
Lsp1109I GCAGC 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 11
MboII GAAGA 1 cut(s) 188
MhlI GDGCHC 2 cut(s) 8, 190
MluCI AATT 3 cut(s) 44, 106, 253
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 1 cut(s) 94
MwoI GCNNNNNNNGC 1 cut(s) 189
NlaIII CATG 1 cut(s) 238
PaqCI CACCTGC 1 cut(s) 161
PciSI GCTCTTC 1 cut(s) 171
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PkrI GCNGC 1 cut(s) 271
PspPI GGNCC 1 cut(s) 226
PstNI CAGNNNCTG 1 cut(s) 205
SapI GCTCTTC 1 cut(s) 171
SatI GCNGC 1 cut(s) 270
Sau96I GGNCC 1 cut(s) 226
SduI GDGCHC 2 cut(s) 8, 190
SetI ASST 3 cut(s) 60, 66, 175
SinI GGWCC 1 cut(s) 226
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 3 cut(s) 44, 106, 253
TaaI ACNGT 2 cut(s) 19, 79
TasI AATT 3 cut(s) 44, 106, 253
TscAI CASTG 1 cut(s) 22
TseI GCWGC 1 cut(s) 269
TspGWI ACGGA 1 cut(s) 57
TspRI CASTG 1 cut(s) 22
VpaK11BI GGWCC 1 cut(s) 226
XmiI GTMKAC 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.