Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001707

Physical Location & Seq

Genomic Coordinates Forward (+)

14580966 .. 14581770

Gene Structure 805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43450

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGCGATTGGACCAAATCATGCAAGACCCTTATGGCAATTATGTTATCCAAGCAGCACTCAGTCAATCAAAGGGAACACTTCATTCTAAACTGGTAGAAGCAATAAAACCTCATATGCCAGTTCTCCGGACCAGTCCCTATGGGAAGAAAATCCTCTCTACCAATATTTTGATGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUF

Protein Analysis

59

Amino Acids

6.65

Weight (kDa)

9.9

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56510 AT5G56510 AT5G56510 AT5G56510 AT5G56510 AT5G56510
fragaria_vesca	FvH4_3g45790 FvH4_3g45790 FvH4_3g45790 FvH4_3g45790
malus_domestica	MD03G1003000.v1.1 MD11G1002800.v1.1
prunus_persica	Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1 Prupe.6G002600_v2.0.a1
pyrus_communis	pycom03g00290 pycom03g00300 pycom11g00260
rosa_chinensis	RchiOBHm_Chr3g0468621 RchiOBHm_Chr5g0083871
rosa_laevigata	RLG00000037060
rosa_multiflora	Rmu_sc0001152.1_g000020 Rmu_sc0012873.1_g000001 Rmu_sc0014979.1_g000001 Rmu_sc0024007.1_g000007 Rmu_sc0026864.1_g000002
rosa_roxburghii	Rroxscaffold_1G00000720 Rroxscaffold_1G00026610 Rroxscaffold_3G00221790 Rroxscaffold_6G00406920 Rroxscaffold_6G00406930 Rroxscaffold_7G00203860
rosa_rugosa	Rorug05G0486900.1 Rorug05G0487000
rosa_samantha	Rh1AG075100 Rh1CG090400 Rh3AG144600 Rh5AG539900 Rh5BG565100 Rh5CG586900
rosa_wichuraiana	Rw2G018590 Rw5G048100 Rw5G050200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	126
Aor13HI	TCCGGA	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	53
AspS9I	GGNCC	2 cut(s)	10, 129
AvaII	GGWCC	2 cut(s)	10, 129
BbvI	GCAGC	1 cut(s)	65
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme18I	GGWCC	2 cut(s)	10, 129
BmgT120I	GGNCC	2 cut(s)	10, 129
BsaWI	WCCGGW	1 cut(s)	126
Bse1I	ACTGG	3 cut(s)	96, 119, 132
BseAI	TCCGGA	1 cut(s)	126
BseMII	CTCAG	1 cut(s)	73
BseNI	ACTGG	3 cut(s)	96, 119, 132
BseXI	GCAGC	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	127
BslFI	GGGAC	1 cut(s)	120
BsmFI	GGGAC	1 cut(s)	120
Bsp13I	TCCGGA	1 cut(s)	126
BspCNI	CTCAG	1 cut(s)	72
BspEI	TCCGGA	1 cut(s)	126
BsrI	ACTGG	3 cut(s)	96, 119, 132
BstDEI	CTNAG	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	65
Cfr13I	GGNCC	2 cut(s)	10, 129
CviAII	CATG	1 cut(s)	19
DdeI	CTNAG	1 cut(s)	59
Eco47I	GGWCC	2 cut(s)	10, 129
FaeI	CATG	1 cut(s)	22
FaiI	YATR	6 cut(s)	20, 33, 42, 114, 116, 141
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	1 cut(s)	18
FauNDI	CATATG	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	54
GluI	GCNGC	1 cut(s)	54
HapII	CCGG	1 cut(s)	127
Hin1II	CATG	1 cut(s)	22
HpaII	CCGG	1 cut(s)	127
Hpy188III	TCNNGA	1 cut(s)	127
HpyCH4V	TGCA	1 cut(s)	22
HpyF3I	CTNAG	1 cut(s)	59
Hsp92II	CATG	1 cut(s)	22
Kpn2I	TCCGGA	1 cut(s)	126
LpnPI	CCDG	4 cut(s)	77, 132, 140, 145
Lsp1109I	GCAGC	1 cut(s)	65
MboII	GAAGA	1 cut(s)	157
MluCI	AATT	1 cut(s)	37
MnlI	CCTC	2 cut(s)	120, 164
MroI	TCCGGA	1 cut(s)	126
MspI	CCGG	1 cut(s)	127
NdeI	CATATG	1 cut(s)	114
NlaIII	CATG	1 cut(s)	22
PkrI	GCNGC	1 cut(s)	55
PspPI	GGNCC	2 cut(s)	10, 129
SatI	GCNGC	1 cut(s)	54
Sau96I	GGNCC	2 cut(s)	10, 129
SetI	ASST	1 cut(s)	112
SgeI	CNNG	7 cut(s)	31, 35, 62, 104, 131, 139, 144
SinI	GGWCC	2 cut(s)	10, 129
Sse9I	AATT	1 cut(s)	37
SspI	AATATT	1 cut(s)	166
TasI	AATT	1 cut(s)	37
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	1 cut(s)	71
VpaK11BI	GGWCC	2 cut(s)	10, 129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.