Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002309

Physical Location & Seq

Genomic Coordinates Reverse (-)

10940097 .. 10941225

Gene Structure 1129 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1119500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGGGAATTCTAGTCAGAACTCGGAGAAGCCTGATAATGTTAAGAAACACAAGTTTTTACTCTTCGGTCAACCAATACTTACAGAGCAGCAGATTTCTCGGAGTTGTTCAAGCGAAGCAGTTTCACAACTTCTTCCTGGGAAAAATTCAAAAGACGGAAGTCAAGACAAAACTACGTTTTTCTTTAACGGTTCAGAATCAGTACTTGGGCGACAGGTTTCGCTAGAAAAATCCACCAGTGCTGGGTTCTCATGGAACAAGGATTTTCAAGCTACTGACTTAGACCTAGAAACTGGTCATTGCAAGGTGTTTATGGAGTCAGAGGATGTGGGACGGACTCTTGACCTCTCGGCCCTTTGTTCTTATGAAGAGCTATACAGGCGGCTGGCCAACATGTTTGAAATAGAAAAACCAGAGATGATGAGCCATGTTCTTTACCGAGATGTAACAGGTGCTGTCAAACAAACTGGAGTTGAACCATTCAGCGATTTTATGAAAACTGCAAAAAGACTGACTATTTTAACACATCCAGCCAGTGAAAGTATTGGAAGGACGTGGATTCGAGGAATGCAAAATGCAGAAAATGGACTGGGAGCAACAAATAAGACCGGTCCTTTGAGCATATTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

211

Amino Acids

23.3

Weight (kDa)

6.11

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28350 AT2G28350
fragaria_vesca	FvH4_3g32000 FvH4_3g32000 FvH4_6g15960 FvH4_6g15960 FvH4_6g15960
malus_domestica	MD03G1119500.v1.1 MD03G1119700.v1.1 MD04G1096900.v1.1
prunus_persica	Prupe.6G102800_v2.0.a1 Prupe.6G102800_v2.0.a1 Prupe.6G102800_v2.0.a1 Prupe.6G236200_v2.0.a1 Prupe.6G236200_v2.0.a1 Prupe.6G236200_v2.0.a1
pyrus_communis	pycom04g09200 pycom11g11370 pycom12g11700
rosa_chinensis	RchiOBHm_Chr3g0469661 RchiOBHm_Chr5g0058761
rosa_laevigata	RLG00000024330 RLG00000035245
rosa_multiflora	Rmu_sc0000367.1_g000238 Rmu_sc0006483.1_g000023 Rmu_sc0030116.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021650 Rroxscaffold_6G00411580
rosa_rugosa	Rorug03G0103100 Rorug03G0103200 Rorug03G0103300 Rorug05G0317900
rosa_samantha	Rh3AG152700 Rh3BG176500 Rh3CG167500 Rh3DG199100 Rh5AG383600 Rh5BG395500 Rh5CG419200 Rh5DG410900
rosa_wichuraiana	Rw3G014400 Rw5G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	382
AcoI	YGGCCR	1 cut(s)	387
AcsI	RAATTY	2 cut(s)	7, 145
AfaI	GTAC	1 cut(s)	204
AfiI	CCNNNNNNNGG	1 cut(s)	243
AflIII	ACRYGT	1 cut(s)	393
AgeI	ACCGGT	1 cut(s)	608
AgsI	TTSAA	5 cut(s)	111, 150, 269, 401, 476
AjiI	CACGTC	1 cut(s)	555
AjnI	CCWGG	1 cut(s)	136
AjuI	GAANNNNNNNTTGG	2 cut(s)	189, 221
AluBI	AGCT	2 cut(s)	272, 373
AluI	AGCT	2 cut(s)	272, 373
AlwNI	CAGNNNCTG	1 cut(s)	455
AoxI	GGCC	2 cut(s)	351, 387
ApeKI	GCWGC	1 cut(s)	88
ApoI	RAATTY	2 cut(s)	7, 145
ArsI	GACNNNNNNTTYG	2 cut(s)	598, 630
AsiGI	ACCGGT	1 cut(s)	608
AspS9I	GGNCC	2 cut(s)	352, 611
AvaII	GGWCC	1 cut(s)	611
BalI	TGGCCA	1 cut(s)	389
BbvI	GCAGC	1 cut(s)	100
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BciT130I	CCWGG	1 cut(s)	138
BfaI	CTAG	3 cut(s)	12, 224, 287
BisI	GCNGC	2 cut(s)	89, 383
BlsI	GCNGC	2 cut(s)	90, 384
BmcAI	AGTACT	1 cut(s)	204
Bme1390I	CCNGG	1 cut(s)	138
Bme18I	GGWCC	1 cut(s)	611
BmgBI	CACGTC	1 cut(s)	555
BmgT120I	GGNCC	2 cut(s)	352, 611
BmrFI	CCNGG	1 cut(s)	138
BmrI	ACTGGG	1 cut(s)	599
BmuI	ACTGGG	1 cut(s)	599
BoxI	GACNNNNGTC	1 cut(s)	159
BpmI	CTGGAG	1 cut(s)	489
BsaJI	CCNNGG	1 cut(s)	137
BsaWI	WCCGGW	1 cut(s)	608
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
Bse118I	RCCGGY	1 cut(s)	608
Bse1I	ACTGG	5 cut(s)	237, 298, 472, 534, 594
Bse3DI	GCAATG	1 cut(s)	298
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	2 cut(s)	331, 526
BseLI	CCNNNNNNNGG	1 cut(s)	243
BseMI	GCAATG	1 cut(s)	298
BseNI	ACTGG	5 cut(s)	237, 298, 472, 534, 594
BseXI	GCAGC	1 cut(s)	100
BseYI	CCCAGC	1 cut(s)	242
BshFI	GGCC	2 cut(s)	353, 389
BshTI	ACCGGT	1 cut(s)	608
BsiSI	CCGG	1 cut(s)	609
BslFI	GGGAC	1 cut(s)	345
BslI	CCNNNNNNNGG	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	345
BsmI	GAATGC	1 cut(s)	573
BsnI	GGCC	2 cut(s)	353, 389
BspACI	CCGC	1 cut(s)	382
BspANI	GGCC	2 cut(s)	353, 389
BspQI	GCTCTTC	1 cut(s)	363
BsrDI	GCAATG	1 cut(s)	298
BsrFI	RCCGGY	1 cut(s)	608
BsrI	ACTGG	5 cut(s)	237, 298, 472, 534, 594
BssAI	RCCGGY	1 cut(s)	608
BssECI	CCNNGG	1 cut(s)	137
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	191
Bst6I	CTCTTC	2 cut(s)	68, 363
BstC8I	GCNNGC	1 cut(s)	387
BstDEI	CTNAG	2 cut(s)	280, 630
BstF5I	GGATG	2 cut(s)	331, 526
BstMWI	GCNNNNNNNGC	1 cut(s)	379
BstNI	CCWGG	1 cut(s)	138
BstNSI	RCATGY	1 cut(s)	397
BstPAI	GACNNNNGTC	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	100
BsuRI	GGCC	2 cut(s)	353, 389
BtrI	CACGTC	1 cut(s)	555
BtsCI	GGATG	2 cut(s)	331, 526
BtsIMutI	CAGTG	2 cut(s)	244, 541
Cac8I	GCNNGC	1 cut(s)	387
CaiI	CAGNNNCTG	1 cut(s)	455
Cfr10I	RCCGGY	1 cut(s)	608
Cfr13I	GGNCC	2 cut(s)	352, 611
Csp6I	GTAC	1 cut(s)	203
CspAI	ACCGGT	1 cut(s)	608
CviAII	CATG	3 cut(s)	252, 394, 428
CviJI	RGCY	8 cut(s)	31, 272, 353, 373, 385, 389, 426, 533
CviKI_1	RGCY	8 cut(s)	31, 272, 353, 373, 385, 389, 426, 533
CviQI	GTAC	1 cut(s)	203
DdeI	CTNAG	2 cut(s)	280, 630
EaeI	YGGCCR	1 cut(s)	387
Eam1104I	CTCTTC	2 cut(s)	68, 363
EarI	CTCTTC	2 cut(s)	68, 363
Eco47I	GGWCC	1 cut(s)	611
EcoRI	GAATTC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	136
FaeI	CATG	3 cut(s)	255, 397, 431
FaiI	YATR	8 cut(s)	253, 314, 366, 376, 395, 429, 494, 623
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	3 cut(s)	251, 393, 427
Fnu4HI	GCNGC	2 cut(s)	89, 383
FokI	GGATG	2 cut(s)	338, 513
Fsp4HI	GCNGC	2 cut(s)	89, 383
FspBI	CTAG	3 cut(s)	12, 224, 287
GluI	GCNGC	2 cut(s)	89, 383
GsaI	CCCAGC	1 cut(s)	246
GsuI	CTGGAG	1 cut(s)	489
HaeIII	GGCC	2 cut(s)	353, 389
HapII	CCGG	1 cut(s)	609
Hin1II	CATG	3 cut(s)	255, 397, 431
HincII	GTYRAC	1 cut(s)	71
HindII	GTYRAC	1 cut(s)	71
HinfI	GANTC	4 cut(s)	197, 317, 337, 559
HpaII	CCGG	1 cut(s)	609
Hpy166II	GTNNAC	1 cut(s)	71
Hpy188I	TCNGA	5 cut(s)	18, 25, 102, 196, 322
Hpy188III	TCNNGA	2 cut(s)	164, 341
Hpy8I	GTNNAC	1 cut(s)	71
HpyAV	CCTTC	1 cut(s)	543
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4IV	ACGT	2 cut(s)	176, 554
HpyCH4V	TGCA	4 cut(s)	303, 503, 571, 578
HpyF10VI	GCNNNNNNNGC	1 cut(s)	379
HpyF3I	CTNAG	2 cut(s)	280, 630
HpySE526I	ACGT	2 cut(s)	176, 554
Hsp92II	CATG	3 cut(s)	255, 397, 431
LguI	GCTCTTC	1 cut(s)	363
LmnI	GCTCC	1 cut(s)	593
Lsp1109I	GCAGC	1 cut(s)	100
MaeI	CTAG	3 cut(s)	12, 224, 287
MaeII	ACGT	2 cut(s)	176, 554
MaeIII	GTNAC	1 cut(s)	445
MboII	GAAGA	3 cut(s)	55, 125, 380
MlsI	TGGCCA	1 cut(s)	389
MluCI	AATT	2 cut(s)	7, 145
MluNI	TGGCCA	1 cut(s)	389
MlyI	GAGTC	2 cut(s)	326, 331
MnlI	CCTC	3 cut(s)	316, 356, 557
Mox20I	TGGCCA	1 cut(s)	389
MscI	TGGCCA	1 cut(s)	389
MseI	TTAA	3 cut(s)	42, 186, 521
Msp20I	TGGCCA	1 cut(s)	389
MspI	CCGG	1 cut(s)	609
MspR9I	CCNGG	1 cut(s)	138
Mva1269I	GAATGC	1 cut(s)	573
MvaI	CCWGG	1 cut(s)	138
MwoI	GCNNNNNNNGC	1 cut(s)	379
NlaIII	CATG	3 cut(s)	255, 397, 431
NmeAIII	GCCGAG	1 cut(s)	329
NspI	RCATGY	1 cut(s)	397
PciI	ACATGT	1 cut(s)	393
PciSI	GCTCTTC	1 cut(s)	363
PctI	GAATGC	1 cut(s)	573
PfeI	GAWTC	2 cut(s)	197, 559
PinAI	ACCGGT	1 cut(s)	608
PkrI	GCNGC	2 cut(s)	90, 384
PleI	GAGTC	2 cut(s)	325, 331
PpsI	GAGTC	2 cut(s)	325, 331
PscI	ACATGT	1 cut(s)	393
PshAI	GACNNNNGTC	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	136
PspFI	CCCAGC	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	136
PspPI	GGNCC	2 cut(s)	352, 611
PstNI	CAGNNNCTG	1 cut(s)	455
RsaI	GTAC	1 cut(s)	204
RsaNI	GTAC	1 cut(s)	203
SapI	GCTCTTC	1 cut(s)	363
SaqAI	TTAA	3 cut(s)	42, 186, 521
SatI	GCNGC	2 cut(s)	89, 383
Sau96I	GGNCC	2 cut(s)	352, 611
ScaI	AGTACT	1 cut(s)	204
SchI	GAGTC	2 cut(s)	326, 331
ScrFI	CCNGG	1 cut(s)	138
SetI	ASST	9 cut(s)	179, 219, 274, 288, 309, 348, 375, 454, 557
SinI	GGWCC	1 cut(s)	611
Sse9I	AATT	2 cut(s)	7, 145
SsiI	CCGC	1 cut(s)	382
SspMI	CTAG	3 cut(s)	12, 224, 287
StyD4I	CCNGG	1 cut(s)	136
TaaI	ACNGT	1 cut(s)	191
TaiI	ACGT	2 cut(s)	179, 557
TaqI	TCGA	1 cut(s)	562
TaqII	GACCGA	1 cut(s)	56
TasI	AATT	2 cut(s)	7, 145
TatI	WGTACW	1 cut(s)	202
TauI	GCSGC	1 cut(s)	385
TfiI	GAWTC	2 cut(s)	197, 559
Tru1I	TTAA	3 cut(s)	42, 186, 521
Tru9I	TTAA	3 cut(s)	42, 186, 521
TscAI	CASTG	2 cut(s)	244, 541
TseI	GCWGC	1 cut(s)	88
TspDTI	ATGAA	2 cut(s)	381, 509
TspGWI	ACGGA	2 cut(s)	171, 349
TspRI	CASTG	2 cut(s)	244, 541
VpaK11BI	GGWCC	1 cut(s)	611
XapI	RAATTY	2 cut(s)	7, 145
XceI	RCATGY	1 cut(s)	397
XspI	CTAG	3 cut(s)	12, 224, 287
ZrmI	AGTACT	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.