Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002309

Physical Location & Seq

Genomic Coordinates Forward (+)

34707201 .. 34710866

Gene Structure 3666 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024330

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2232 bp

ATGCATTGTATTAAGAAATTTTTGCTGGTTGCCTCGTGTGTGCTGTCTAAGCATTTACTCAGAGCTAAGAAGAAAAGGGGGTTTGCAAAATTTTGGTTCTTTTGTTTTAGAGATTTGGAGATGATTACGTTTATGGATTCGAAAGAAAAATTGAAGGAGGGAGAGAAGTGCTTGGATCCTCAGCTATGGCATGCCTGTGCTGGAGGGATGGTTCAAATGCCATCGGTGAATGCCAAAGTGTTTTACTTCCCTCAGGGCCATGCCGAACACGCTTGTGGCTCTGTCGATTTCAGGAACTGCCCGAGGATTCCGCCTTACATACTATGCAGGGTCTCGGCCATCAAGTTCATGGCTGATCCTGAGACTGATGAGGTTTATGCCAAGATTAGACTGGTTCCTTTGAGCTCCAGTGAGGCTGGTTATGAGGATAATGGAATTGGGGGGATTAATGGGGGTGATTCGCAAGATAAGCCGGCCTCATTTGCGAAGACTCTGACTCAGTCGGATGCTAACAACGGTGGGGGGTTTTCTGTGCCGAGATACTGTGCTGAAACCATCTTTCCCAGATTGGACTACTCAGCCGATCCTCCTGTGCAGACAATTCTCGCTAAGGATGTTCATGGCGAGACTTGGAAGTTTAGGCACATATATAGGGGGACGCCGAGGCGGCATCTATTGACCACAGGGTGGAGTACTTTTGTGAACCACAAGAAGCTTGTTGCTGGGGACTCGATTGTGTTTTTGAGGGCAGAGAATGGTGATCTTTGTGTTGGAATTCGGCGAGCCAAGAGGGGAATTGGGGGTGGGCCGGAGTCATCTTCTGGGTGGAATCCGGCGGGTGGGAATTGTGCCATGCCATATGGAGGGTTCTCTTCCTATTTGAGGGAGGATGAGGGGAAACTGATGAGAAATGGCAATGGTAGTGGCTCGAATTCGAATGGAAGTCTAATGGGGAAGGGGAAAGTTGGTCCTGAATCGGTTTTGGAAGCTGCAACACTTGCTTCAAATGGACAACCCTTTGAGGTTGTTTACTACCCTCGAGCAAGTACTCCAGAGTTTTGTGTGAAAGCCTCGTTGGTGAAGGCAGCATTGCAGATCCGTTGGTGCCCCGGAATGAGATTTAAGATGGCCTTTGAAACCGAAGATTCTTCCAGGATAAGTTGGTTCATGGGAACCATATCCTCTGTTCATGTTTCTGAGCCTATGCGCTGGCCTGAATCACCTTGGCGGCTTCTCCAGGTTAGCTGGGATGAACCTGATTTGCTTCAGAATGTTAAGCGCGTTAGCCCGTGGCTGGTAGAATTGGTGTCAAACATGCCCACCATCCATCTGACACCCTTCTCACCACCAAGGAAGAAGATGAGACTGCCACAACACCCCGATTTCCCATTTGAGGGACAACTTCCAATGCCGACATTTTCCGGCAATCACCACCTCCTTGGAACCAGCAGCCCCTTCGGTTGTCTGCCCGACAAAACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTACGGTCTATCCTTACCAGATATCCACCTCAATAAACTGCAATCAGGTCTATTTCCGGCTGGTTTCCCGCCACTTGATCATGTTGCTACACCCACCAAATTCTCCAATAACACAATGATTCAAAGGCCTACCATGAGCGAGAATGTGTCTTGCTTGTTAACTATGGCACATTCTCCACAGTCTTCAAAGAAACCCGATGATGTCAAGCCACCGCAACTCATGCTCTTCGGTCAACCAATACTTACTGAGCAGCAAATCTCTTTGAGCTCCTCTGGCGATACTGTCTCACCAGTGCTTACTGGAAATAGTTCGTCAGATGGAAGTGGAGATAAAATGGCAAACCATTCTGATAATTCTGGATCTGCACTTCACCAACAAAGCGTACAAGAGCGATCATCTGGTGAAGGTTTCCATTGGTATAAGGACACTCGGCATGAAGCTGAACCAAATTTGGAAACTGGTCACTGTAAAGTCTTTATGGAATCTGAAGATGTGGGCCGCACTCTTGACTTTTCACAGTTCAAGTCTTATGATGAATTGTATACAAAACTGGCAGACATGTTTGGCATAGAAAATTCCGAGACATTGAACCATGTGCTCTATCGAGATGCTACTGGTGCAGTCAAACACATTGGAGACGAACCATTCAGTGACTTTGTGAAAACAGCAAGGAGATTGACGATTCTAATGGATTCAGGCAGCAACAATGTAGGAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

744

Amino Acids

82.05

Weight (kDa)

7.85

Isoelectric Point (pI)

51.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	161 - 262	3.8e-23	B3 DNA binding domain
BRWD_AD	PF25313	335 - 436	8.5e-09	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	353 - 436	2e-33	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28350 AT2G28350
fragaria_vesca	FvH4_3g32000 FvH4_3g32000 FvH4_6g15960 FvH4_6g15960 FvH4_6g15960
malus_domestica	MD03G1119500.v1.1 MD03G1119700.v1.1 MD04G1096900.v1.1
prunus_persica	Prupe.6G102800_v2.0.a1 Prupe.6G102800_v2.0.a1 Prupe.6G102800_v2.0.a1 Prupe.6G236200_v2.0.a1 Prupe.6G236200_v2.0.a1 Prupe.6G236200_v2.0.a1
pyrus_communis	pycom04g09200 pycom11g11370 pycom12g11700
rosa_chinensis	RchiOBHm_Chr3g0469661 RchiOBHm_Chr5g0058761
rosa_laevigata	RLG00000024330 RLG00000035245
rosa_multiflora	Rmu_sc0000367.1_g000238 Rmu_sc0006483.1_g000023 Rmu_sc0030116.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021650 Rroxscaffold_6G00411580
rosa_rugosa	Rorug03G0103100 Rorug03G0103200 Rorug03G0103300 Rorug05G0317900
rosa_samantha	Rh3AG152700 Rh3BG176500 Rh3CG167500 Rh3DG199100 Rh5AG383600 Rh5BG395500 Rh5CG419200 Rh5DG410900
rosa_wichuraiana	Rw3G014400 Rw5G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1104
AccB7I	CCANNNNNTGG	1 cut(s)	687
AccI	GTMKAC	1 cut(s)	2054
AccII	CGCG	1 cut(s)	1281
AciI	CCGC	7 cut(s)	311, 667, 836, 1228, 1580, 1724, 2011
AclWI	GGATC	6 cut(s)	170, 183, 350, 578, 1090, 1879
AcoI	YGGCCR	1 cut(s)	336
AcsI	RAATTY	7 cut(s)	17, 89, 774, 931, 1610, 1960, 2086
AcuI	CTGAAG	2 cut(s)	1250, 2019
AcyI	GRCGYC	1 cut(s)	659
AdeI	CACNNNGTG	1 cut(s)	687
AfaI	GTAC	3 cut(s)	694, 1048, 1896
AfiI	CCNNNNNNNGG	7 cut(s)	687, 839, 863, 882, 1294, 1393, 1394
AflIII	ACRYGT	1 cut(s)	2070
AgsI	TTSAA	8 cut(s)	154, 215, 1005, 1136, 1634, 1698, 2035, 2101
AjnI	CCWGG	3 cut(s)	1151, 1236, 1499
AjuI	GAANNNNNNNTTGG	2 cut(s)	1058, 1090
AleI	CACNNNNGTG	1 cut(s)	273
AloI	GAACNNNNNNTCC	2 cut(s)	195, 227
AluBI	AGCT	8 cut(s)	65, 184, 405, 715, 989, 1245, 1779, 1952
AluI	AGCT	8 cut(s)	65, 184, 405, 715, 989, 1245, 1779, 1952
Alw21I	GWGCWC	3 cut(s)	407, 1781, 2112
Alw26I	GTCTC	7 cut(s)	337, 356, 620, 1357, 1801, 2087, 2142
AlwI	GGATC	6 cut(s)	170, 183, 350, 578, 1090, 1879
AlwNI	CAGNNNCTG	1 cut(s)	297
Ama87I	CYCGRG	2 cut(s)	301, 1038
AoxI	GGCC	8 cut(s)	256, 336, 474, 806, 1128, 1211, 1637, 2008
ApeKI	GCWGC	5 cut(s)	989, 1085, 1449, 1762, 2211
ApoI	RAATTY	7 cut(s)	17, 89, 774, 931, 1610, 1960, 2086
AseI	ATTAAT	1 cut(s)	447
Asp700I	GAANNNNTTC	1 cut(s)	1819
AspLEI	GCGC	2 cut(s)	1209, 1281
AspS9I	GGNCC	4 cut(s)	256, 806, 968, 2008
AsuC2I	CCSGG	1 cut(s)	1110
AsuII	TTCGAA	2 cut(s)	140, 935
AvaI	CYCGRG	2 cut(s)	301, 1038
AvaII	GGWCC	1 cut(s)	968
AxyI	CCTNAGG	1 cut(s)	252
BaeGI	GKGCMC	1 cut(s)	1109
BamHI	GGATCC	1 cut(s)	175
BanI	GGYRCC	1 cut(s)	1104
BanII	GRGCYC	2 cut(s)	407, 1781
BauI	CACGAG	1 cut(s)	34
BbsI	GAAGAC	2 cut(s)	494, 1686
Bbv12I	GWGCWC	3 cut(s)	407, 1781, 2112
BbvCI	CCTCAGC	1 cut(s)	180
BbvI	GCAGC	5 cut(s)	976, 1097, 1461, 1774, 2223
BccI	CCATC	8 cut(s)	202, 229, 347, 563, 1120, 1331, 1335, 1823
BcgI	CGANNNNNNTGC	2 cut(s)	1438, 1472
BciT130I	CCWGG	3 cut(s)	1153, 1238, 1501
BclI	TGATCA	1 cut(s)	1588
BcnI	CCSGG	1 cut(s)	1110
BcoDI	GTCTC	7 cut(s)	337, 356, 620, 1357, 1801, 2087, 2142
BglI	GCCNNNNNGGC	1 cut(s)	667
BisI	GCNGC	8 cut(s)	668, 990, 1086, 1229, 1450, 1763, 2011, 2212
BlsI	GCNGC	8 cut(s)	669, 991, 1087, 1230, 1451, 1764, 2012, 2213
BmcAI	AGTACT	2 cut(s)	694, 1048
Bme1390I	CCNGG	4 cut(s)	1110, 1153, 1238, 1501
Bme18I	GGWCC	1 cut(s)	968
BmeT110I	CYCGRG	2 cut(s)	301, 1038
BmgT120I	GGNCC	4 cut(s)	256, 806, 968, 2008
BmiI	GGNNCC	6 cut(s)	177, 396, 1106, 1174, 1444, 1498
BmrFI	CCNGG	4 cut(s)	1110, 1153, 1238, 1501
BmsI	GCATC	3 cut(s)	496, 679, 2110
BpiI	GAAGAC	2 cut(s)	494, 1686
BpmI	CTGGAG	4 cut(s)	222, 391, 1035, 1220
Bpu10I	CCTNAGC	2 cut(s)	180, 609
Bpu14I	TTCGAA	2 cut(s)	140, 935
BpuMI	CCSGG	1 cut(s)	1110
BsaHI	GRCGYC	1 cut(s)	659
BsaI	GGTCTC	1 cut(s)	337
BsaJI	CCNNGG	7 cut(s)	302, 662, 1108, 1223, 1289, 1349, 1438
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bsc4I	CCNNNNNNNGG	7 cut(s)	687, 839, 863, 882, 1294, 1393, 1394
Bse118I	RCCGGY	1 cut(s)	472
Bse1I	ACTGG	7 cut(s)	396, 408, 1802, 1816, 1975, 2067, 2131
Bse21I	CCTNAGG	1 cut(s)	252
Bse3DI	GCAATG	2 cut(s)	922, 1088
BseBI	CCWGG	3 cut(s)	1153, 1238, 1501
BseDI	CCNNGG	7 cut(s)	302, 662, 1108, 1223, 1289, 1349, 1438
BseGI	GGATG	6 cut(s)	213, 511, 619, 895, 1255, 1323
BseLI	CCNNNNNNNGG	7 cut(s)	687, 839, 863, 882, 1294, 1393, 1394
BseMI	GCAATG	2 cut(s)	922, 1088
BseMII	CTCAG	8 cut(s)	73, 194, 266, 351, 512, 591, 1188, 1749
BseNI	ACTGG	7 cut(s)	396, 408, 1802, 1816, 1975, 2067, 2131
BseRI	GAGGAG	1 cut(s)	1771
BseSI	GKGCMC	1 cut(s)	1109
BseXI	GCAGC	5 cut(s)	976, 1097, 1461, 1774, 2223
BseYI	CCCAGC	2 cut(s)	722, 1245
BsgI	GTGCAG	3 cut(s)	614, 1860, 2151
Bsh1236I	CGCG	1 cut(s)	1281
BshFI	GGCC	8 cut(s)	258, 338, 476, 808, 1130, 1213, 1639, 2010
BshNI	GGYRCC	1 cut(s)	1104
BsiHKAI	GWGCWC	3 cut(s)	407, 1781, 2112
BsiHKCI	CYCGRG	2 cut(s)	301, 1038
BsiSI	CCGG	6 cut(s)	473, 809, 833, 1110, 1422, 1568
BslFI	GGGAC	3 cut(s)	670, 740, 1410
BslI	CCNNNNNNNGG	7 cut(s)	687, 839, 863, 882, 1294, 1393, 1394
BsmAI	GTCTC	7 cut(s)	337, 356, 620, 1357, 1801, 2087, 2142
BsmBI	CGTCTC	1 cut(s)	2142
BsmFI	GGGAC	3 cut(s)	670, 740, 1410
BsmI	GAATGC	1 cut(s)	235
BsnI	GGCC	8 cut(s)	258, 338, 476, 808, 1130, 1213, 1639, 2010
Bso31I	GGTCTC	1 cut(s)	337
BsoBI	CYCGRG	2 cut(s)	301, 1038
Bsp119I	TTCGAA	2 cut(s)	140, 935
Bsp1286I	GDGCHC	4 cut(s)	407, 1109, 1781, 2112
Bsp143I	GATC	8 cut(s)	175, 355, 583, 760, 1095, 1588, 1871, 1904
BspACI	CCGC	7 cut(s)	311, 667, 836, 1228, 1580, 1724, 2011
BspANI	GGCC	8 cut(s)	258, 338, 476, 808, 1130, 1213, 1639, 2010
BspCNI	CTCAG	8 cut(s)	72, 193, 265, 352, 511, 590, 1189, 1750
BspFNI	CGCG	1 cut(s)	1281
BspLI	GGNNCC	6 cut(s)	177, 396, 1106, 1174, 1444, 1498
BspPI	GGATC	6 cut(s)	170, 183, 350, 578, 1090, 1879
BspQI	GCTCTTC	1 cut(s)	1742
BspT104I	TTCGAA	2 cut(s)	140, 935
BspT107I	GGYRCC	1 cut(s)	1104
BspTNI	GGTCTC	1 cut(s)	337
BsrDI	GCAATG	2 cut(s)	922, 1088
BsrFI	RCCGGY	1 cut(s)	472
BsrI	ACTGG	7 cut(s)	396, 408, 1802, 1816, 1975, 2067, 2131
BssAI	RCCGGY	1 cut(s)	472
BssECI	CCNNGG	7 cut(s)	302, 662, 1108, 1223, 1289, 1349, 1438
BssMI	GATC	8 cut(s)	175, 355, 583, 760, 1095, 1588, 1871, 1904
BssNAI	GTATAC	1 cut(s)	2055
BssNI	GRCGYC	1 cut(s)	659
BssSI	CACGAG	1 cut(s)	34
BssT1I	CCWWGG	3 cut(s)	1223, 1349, 1438
Bst1107I	GTATAC	1 cut(s)	2055
Bst2BI	CACGAG	1 cut(s)	34
Bst2UI	CCWGG	3 cut(s)	1153, 1238, 1501
Bst4CI	ACNGT	7 cut(s)	518, 545, 1517, 1692, 1795, 1979, 2031
Bst6I	CTCTTC	2 cut(s)	877, 1742
BstACI	GRCGYC	1 cut(s)	659
BstAPI	GCANNNNNTGC	2 cut(s)	998, 1732
BstBI	TTCGAA	2 cut(s)	140, 935
BstC8I	GCNNGC	7 cut(s)	192, 474, 783, 1211, 1486, 1490, 1506
BstDSI	CCRYGG	1 cut(s)	1289
BstENI	CCTNNNNNAGG	1 cut(s)	880
BstF5I	GGATG	6 cut(s)	213, 511, 619, 895, 1255, 1323
BstFNI	CGCG	1 cut(s)	1281
BstHHI	GCGC	2 cut(s)	1209, 1281
BstKTI	GATC	8 cut(s)	178, 358, 586, 763, 1098, 1591, 1874, 1907
BstMAI	GTCTC	7 cut(s)	337, 356, 620, 1357, 1801, 2087, 2142
BstMBI	GATC	8 cut(s)	175, 355, 583, 760, 1095, 1588, 1871, 1904
BstNI	CCWGG	3 cut(s)	1153, 1238, 1501
BstNSI	RCATGY	5 cut(s)	194, 1318, 1492, 1508, 2074
BstSCI	CCNGG	4 cut(s)	1108, 1151, 1236, 1499
BstSLI	GKGCMC	1 cut(s)	1109
BstUI	CGCG	1 cut(s)	1281
BstV1I	GCAGC	5 cut(s)	976, 1097, 1461, 1774, 2223
BstV2I	GAAGAC	2 cut(s)	494, 1686
BstX2I	RGATCY	3 cut(s)	175, 1095, 1871
BstXI	CCANNNNNNTGG	1 cut(s)	1439
BstYI	RGATCY	3 cut(s)	175, 1095, 1871
BstZ17I	GTATAC	1 cut(s)	2055
Bsu36I	CCTNAGG	1 cut(s)	252
BsuRI	GGCC	8 cut(s)	258, 338, 476, 808, 1130, 1213, 1639, 2010
BtgI	CCRYGG	1 cut(s)	1289
BtsCI	GGATG	6 cut(s)	213, 511, 619, 895, 1255, 1323
BtsIMutI	CAGTG	4 cut(s)	415, 1809, 1975, 2167
Cac8I	GCNNGC	7 cut(s)	192, 474, 783, 1211, 1486, 1490, 1506
CaiI	CAGNNNCTG	1 cut(s)	297
CfoI	GCGC	2 cut(s)	1209, 1281
Cfr10I	RCCGGY	1 cut(s)	472
Cfr13I	GGNCC	4 cut(s)	256, 806, 968, 2008
CseI	GACGC	1 cut(s)	667
Csp6I	GTAC	3 cut(s)	693, 1047, 1895
CspCI	CAANNNNNGTGG	2 cut(s)	904, 939
CviQI	GTAC	3 cut(s)	693, 1047, 1895
DpnI	GATC	8 cut(s)	177, 357, 585, 762, 1097, 1590, 1873, 1906
DpnII	GATC	8 cut(s)	175, 355, 583, 760, 1095, 1588, 1871, 1904
DraIII	CACNNNGTG	1 cut(s)	687
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	2 cut(s)	877, 1742
EarI	CTCTTC	2 cut(s)	877, 1742
EciI	GGCGGA	1 cut(s)	300
Ecl136II	GAGCTC	2 cut(s)	405, 1779
Eco130I	CCWWGG	3 cut(s)	1223, 1349, 1438
Eco147I	AGGCCT	1 cut(s)	1639
Eco24I	GRGCYC	2 cut(s)	407, 1781
Eco31I	GGTCTC	1 cut(s)	337
Eco32I	GATATC	1 cut(s)	1534
Eco47I	GGWCC	1 cut(s)	968
Eco53kI	GAGCTC	2 cut(s)	405, 1779
Eco57I	CTGAAG	2 cut(s)	1250, 2019
Eco81I	CCTNAGG	1 cut(s)	252
Eco88I	CYCGRG	2 cut(s)	301, 1038
EcoICRI	GAGCTC	2 cut(s)	405, 1779
EcoNI	CCTNNNNNAGG	1 cut(s)	880
EcoRI	GAATTC	2 cut(s)	774, 931
EcoRII	CCWGG	3 cut(s)	1151, 1236, 1499
EcoRV	GATATC	1 cut(s)	1534
EcoT14I	CCWWGG	3 cut(s)	1223, 1349, 1438
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	407, 1781
ErhI	CCWWGG	3 cut(s)	1223, 1349, 1438
Esp3I	CGTCTC	1 cut(s)	2142
FalI	AAGNNNNNCTT	2 cut(s)	1115, 1147
FaqI	GGGAC	3 cut(s)	670, 740, 1410
FauI	CCCGC	2 cut(s)	829, 1587
FauNDI	CATATG	1 cut(s)	859
FbaI	TGATCA	1 cut(s)	1588
FblI	GTMKAC	1 cut(s)	2054
Fnu4HI	GCNGC	8 cut(s)	668, 990, 1086, 1229, 1450, 1763, 2011, 2212
FokI	GGATG	6 cut(s)	220, 518, 626, 902, 1262, 1310
FriOI	GRGCYC	2 cut(s)	407, 1781
Fsp4HI	GCNGC	8 cut(s)	668, 990, 1086, 1229, 1450, 1763, 2011, 2212
GlaI	GCGC	2 cut(s)	1208, 1280
GluI	GCNGC	8 cut(s)	668, 990, 1086, 1229, 1450, 1763, 2011, 2212
GsaI	CCCAGC	2 cut(s)	726, 1249
GsuI	CTGGAG	4 cut(s)	222, 391, 1035, 1220
HaeIII	GGCC	8 cut(s)	258, 338, 476, 808, 1130, 1213, 1639, 2010
HapII	CCGG	6 cut(s)	473, 809, 833, 1110, 1422, 1568
HgaI	GACGC	1 cut(s)	667
HhaI	GCGC	2 cut(s)	1209, 1281
Hin1I	GRCGYC	1 cut(s)	659
Hin6I	GCGC	2 cut(s)	1207, 1279
HinP1I	GCGC	2 cut(s)	1207, 1279
HincII	GTYRAC	2 cut(s)	1671, 1745
HindII	GTYRAC	2 cut(s)	1671, 1745
HindIII	AAGCTT	1 cut(s)	713
HpaI	GTTAAC	1 cut(s)	1671
HpaII	CCGG	6 cut(s)	473, 809, 833, 1110, 1422, 1568
Hpy166II	GTNNAC	5 cut(s)	703, 1030, 1671, 1745, 2055
Hpy188III	TCNNGA	7 cut(s)	292, 359, 971, 1052, 1869, 2018, 2117
Hpy8I	GTNNAC	5 cut(s)	703, 1030, 1671, 1745, 2055
HpyAV	CCTTC	6 cut(s)	148, 949, 1075, 1348, 1465, 1910
HpyCH4III	ACNGT	7 cut(s)	518, 545, 1517, 1692, 1795, 1979, 2031
HpyCH4IV	ACGT	1 cut(s)	128
HpySE526I	ACGT	1 cut(s)	128
Hsp92I	GRCGYC	1 cut(s)	659
HspAI	GCGC	2 cut(s)	1207, 1279
KroI	GCCGGC	1 cut(s)	472
KroNI	GCCGGC	1 cut(s)	474
Ksp22I	TGATCA	1 cut(s)	1588
KspAI	GTTAAC	1 cut(s)	1671
Kzo9I	GATC	8 cut(s)	175, 355, 583, 760, 1095, 1588, 1871, 1904
LguI	GCTCTTC	1 cut(s)	1742
LmnI	GCTCC	3 cut(s)	410, 1496, 1784
Lsp1109I	GCAGC	5 cut(s)	976, 1097, 1461, 1774, 2223
LweI	GCATC	3 cut(s)	496, 679, 2110
MaeII	ACGT	1 cut(s)	128
MaeIII	GTNAC	2 cut(s)	1973, 2162
MalI	GATC	8 cut(s)	177, 357, 585, 762, 1097, 1590, 1873, 1906
MboI	GATC	8 cut(s)	175, 355, 583, 760, 1095, 1588, 1871, 1904
MflI	RGATCY	3 cut(s)	175, 1095, 1871
MhlI	GDGCHC	4 cut(s)	407, 1109, 1781, 2112
MlyI	GAGTC	4 cut(s)	484, 490, 722, 821
MmeI	TCCRAC	2 cut(s)	483, 751
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	472
MroXI	GAANNNNTTC	1 cut(s)	1819
MseI	TTAA	5 cut(s)	12, 447, 1122, 1275, 1670
MslI	CAYNNNNRTG	2 cut(s)	195, 273
MspI	CCGG	6 cut(s)	473, 809, 833, 1110, 1422, 1568
MspR9I	CCNGG	4 cut(s)	1110, 1153, 1238, 1501
Mva1269I	GAATGC	1 cut(s)	235
MvaI	CCWGG	3 cut(s)	1153, 1238, 1501
MvnI	CGCG	1 cut(s)	1281
NaeI	GCCGGC	1 cut(s)	474
NciI	CCSGG	1 cut(s)	1110
NdeI	CATATG	1 cut(s)	859
NdeII	GATC	8 cut(s)	175, 355, 583, 760, 1095, 1588, 1871, 1904
NgoMIV	GCCGGC	1 cut(s)	472
NlaIV	GGNNCC	6 cut(s)	177, 396, 1106, 1174, 1444, 1498
NmeAIII	GCCGAG	4 cut(s)	314, 561, 687, 1921
NmuCI	GTSAC	2 cut(s)	1973, 2162
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	5 cut(s)	194, 1318, 1492, 1508, 2074
NspV	TTCGAA	2 cut(s)	140, 935
OliI	CACNNNNGTG	1 cut(s)	273
PaeI	GCATGC	3 cut(s)	194, 1492, 1508
PaeR7I	CTCGAG	1 cut(s)	1038
PceI	AGGCCT	1 cut(s)	1639
PciI	ACATGT	1 cut(s)	2070
PciSI	GCTCTTC	1 cut(s)	1742
PctI	GAATGC	1 cut(s)	235
PdiI	GCCGGC	1 cut(s)	474
PdmI	GAANNNNTTC	1 cut(s)	1819
PflFI	GACNNNGTC	1 cut(s)	499
PflMI	CCANNNNNTGG	1 cut(s)	687
PfoI	TCCNGGA	1 cut(s)	1151
PkrI	GCNGC	8 cut(s)	669, 991, 1087, 1230, 1451, 1764, 2012, 2213
PleI	GAGTC	4 cut(s)	484, 490, 722, 820
PpsI	GAGTC	4 cut(s)	484, 490, 722, 820
PscI	ACATGT	1 cut(s)	2070
PshBI	ATTAAT	1 cut(s)	447
Psp124BI	GAGCTC	2 cut(s)	407, 1781
Psp6I	CCWGG	3 cut(s)	1151, 1236, 1499
PspFI	CCCAGC	2 cut(s)	722, 1245
PspGI	CCWGG	3 cut(s)	1151, 1236, 1499
PspN4I	GGNNCC	6 cut(s)	177, 396, 1106, 1174, 1444, 1498
PspPI	GGNCC	4 cut(s)	256, 806, 968, 2008
PspXI	VCTCGAGB	1 cut(s)	1038
PstNI	CAGNNNCTG	1 cut(s)	297
PsuI	RGATCY	3 cut(s)	175, 1095, 1871
PsyI	GACNNNGTC	1 cut(s)	499
RsaI	GTAC	3 cut(s)	694, 1048, 1896
RsaNI	GTAC	3 cut(s)	693, 1047, 1895
RseI	CAYNNNNRTG	2 cut(s)	195, 273
SacI	GAGCTC	2 cut(s)	407, 1781
SapI	GCTCTTC	1 cut(s)	1742
SaqAI	TTAA	5 cut(s)	12, 447, 1122, 1275, 1670
SatI	GCNGC	8 cut(s)	668, 990, 1086, 1229, 1450, 1763, 2011, 2212
Sau3AI	GATC	8 cut(s)	175, 355, 583, 760, 1095, 1588, 1871, 1904
Sau96I	GGNCC	4 cut(s)	256, 806, 968, 2008
ScaI	AGTACT	2 cut(s)	694, 1048
SchI	GAGTC	4 cut(s)	484, 490, 722, 821
ScrFI	CCNGG	4 cut(s)	1110, 1153, 1238, 1501
SduI	GDGCHC	4 cut(s)	407, 1109, 1781, 2112
SfaNI	GCATC	3 cut(s)	496, 679, 2110
Sfr274I	CTCGAG	1 cut(s)	1038
SfuI	TTCGAA	2 cut(s)	140, 935
SinI	GGWCC	1 cut(s)	968
SlaI	CTCGAG	1 cut(s)	1038
SmiMI	CAYNNNNRTG	2 cut(s)	195, 273
SmlI	CTYRAG	1 cut(s)	1038
SmoI	CTYRAG	1 cut(s)	1038
SphI	GCATGC	3 cut(s)	194, 1492, 1508
SseBI	AGGCCT	1 cut(s)	1639
SsiI	CCGC	7 cut(s)	311, 667, 836, 1228, 1580, 1724, 2011
SstI	GAGCTC	2 cut(s)	407, 1781
StuI	AGGCCT	1 cut(s)	1639
StyD4I	CCNGG	4 cut(s)	1108, 1151, 1236, 1499
StyI	CCWWGG	3 cut(s)	1223, 1349, 1438
TaaI	ACNGT	7 cut(s)	518, 545, 1517, 1692, 1795, 1979, 2031
TaiI	ACGT	1 cut(s)	131
TaqI	TCGA	7 cut(s)	140, 285, 731, 929, 935, 1039, 2116
TaqII	GACCGA	1 cut(s)	1730
TatI	WGTACW	2 cut(s)	692, 1046
TauI	GCSGC	3 cut(s)	670, 1231, 2013
Tru1I	TTAA	5 cut(s)	12, 447, 1122, 1275, 1670
Tru9I	TTAA	5 cut(s)	12, 447, 1122, 1275, 1670
TscAI	CASTG	4 cut(s)	415, 1809, 1982, 2167
TseFI	GTSAC	2 cut(s)	1973, 2162
TseI	GCWGC	5 cut(s)	989, 1085, 1449, 1762, 2211
Tsp45I	GTSAC	2 cut(s)	1973, 2162
TspDTI	ATGAA	7 cut(s)	337, 608, 1156, 1178, 1266, 1962, 2061
TspGWI	ACGGA	1 cut(s)	1088
TspRI	CASTG	4 cut(s)	415, 1809, 1982, 2167
Tth111I	GACNNNGTC	1 cut(s)	499
Van91I	CCANNNNNTGG	1 cut(s)	687
VpaK11BI	GGWCC	1 cut(s)	968
VspI	ATTAAT	1 cut(s)	447
XagI	CCTNNNNNAGG	1 cut(s)	880
XapI	RAATTY	7 cut(s)	17, 89, 774, 931, 1610, 1960, 2086
XceI	RCATGY	5 cut(s)	194, 1318, 1492, 1508, 2074
XcmI	CCANNNNNNNNNTGG	2 cut(s)	346, 388
XhoI	CTCGAG	1 cut(s)	1038
XmiI	GTMKAC	1 cut(s)	2054
XmnI	GAANNNNTTC	1 cut(s)	1819
ZrmI	AGTACT	2 cut(s)	694, 1048
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.