Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0002309

Physical Location & Seq

Genomic Coordinates Forward (+)

17913236 .. 17917408

Gene Structure 4173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1096900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2106 bp

ATGATTACATTTATGGATTCAAAAGAGAAATTGAAGGAGGGGGATAGGTGCTTAGATCCTCAGCTATGGCATGCCTGCGCCGGCGGCATGGTTCAAATGCCACCGGTGAATGCCAAGGTCTTCTACTTCCCTCAGGGCCATGCTGAGCATGCCTGTGGACCTGTTGATTTCAGGAATTGCCCAAGAGTTTCTCCCTATATACTTTGCCGGGTTGCCGCCATTAGGTTCATGGCTGATCCTGAGACTGATGAGGTTTATGCCAAGATTAGGTTGGTTCCTTTGAATGGGGTCGAGGCGGGCTACGAGGATGATGGAATTGGAGGGCTTAATGGGTCTGAAACGCCGGATAAACCCGCCTCATTTGCAAAAACATTGACGCAATCCGATGCAAACAATGGCGGTGGGTTCTCTGTTCCGAGATATTGTGCAGAAACCATCTTTCCGCGATTGGATTACTCTGCCAATCCCCCAGTTCAGACAATTCTTGCTAAGGATGTTCATGGTGAAACTTGGAAGTTTAAGCACATTTACAGGGGGACCCCTAGGCGGCATCTATTAACCACGGGGTGGAGTACCTTTGTGAACCACAAGAAGCTTGTTTCTGGGGACTCAATTGTGTTTTTGAGGGCAGAGAATGGTGATCTCTGTGTCGGGATTCGTCGAGCAAAGAGGGGAAGTGGAAGTGGACCGGAGTCATCTTCAGGGTGGAATCCAATGGGTGGGAATTGTACTGTGCCATATGGTGGATTCTCGGCGTTTTTGAGGGAGGATGAGAACAATCTAATGAGAAATGGCAATGGTAATATCTCTAATTCGAATGGAAGTCTAGTGGGTAAGGGGAAAGTCGGGCCTGAATCTGTTTCTGAAGCTGCAACACTTGCTGCAAATGGACAGCCCTTTGAGGTTGTTTACTACCCTAGAGCAAGTACCCCAGAATTCTGTGTGAAGGCCTCATTGGTGAAAGCAGCATTGCAGATCCGGTGGTGCCCCGGAATGAGATTCAAGATGGCCTTTGAAACTGAGGATTCTTCCCGGATAAGTTGGTTCATGGGAACTATATCCTCTGTTCAGGTTGCTGAGCCTTTGCGCTGGCCCGAGTCACCTTGGAGGCTTCTCCAGGTTACCTGGGATGAACCCGATTTACTTCAAAATGTGAAACGTGTTAGCCCATGGTTGGTAGAGTTGGTATCCAACATGCCCGCGATCCATCTGACACCTTTCTCACTGCCAAGAAAGAAGATGAGACTACCTCAATACCCAGATTTCCCTTTTGAAGGCCAACTTCCAATGCCGACTTTTTCCGGCAACCTCCTTGGACCCAGCAGCCCCTTTGGTTGTCTGCCCGACAAAACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTCTATCCTTATCAGATATGCACCTCAATAAACTGCACACAGATCTATTTCCGGCTGGTTTCCCGCCACTTTATCATGCTGCTGCACCCACTAAATTCACCAATAACATGGTGATTCATAAGCCTACCATAAGCGAGAATGTTTCATGCTTATTGACTATGTCACATTTTACCCCGACGTCAAAGAAACCTGATGATGTAAAGCCACCGCAGCTCATACTCTTTGGTCAGCCAATACTTACTGAGCAGCAGATCTCTCTGAGCAGCTCTGGCGATACAGTCTCACCAGTTCTTACCGGAAATAGTTTGTCCGATGGGAATGCAGATAGAATGGTAAATCATTCTGATAATTCTGGATCTGCACTTCACCGACAAAGCATACAAGAGCGCTCATCTTGTGAAGGTTTCCAATGGTACAAGGATACTCGAAATGAAACCGAACTAAGTCTGGAAACTGGTCACTGTAAAGTCTTTATGGAATCAGAAGACGTAGGTCGCACTCTTGACCTTTCACTTCTGGGGTCTTATGATGAATTGTACAGAAAACTGGCAGATATGTTTGACATAGACAACTCTGAGACACTGAACCATGTGCTCTATCGAGATGGTACTGGTGCAGTTAAACACATTGGAGAAGAACCTTTCAGTGACTTCGTGAAAACGGCAAGGAGATTGACGATTCTAATAGATTCAGGCAGCAACAACGTAGGAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

702

Amino Acids

77.27

Weight (kDa)

6.3

Isoelectric Point (pI)

49.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	121 - 222	6.8e-23	B3 DNA binding domain
BRWD_AD	PF25313	294 - 396	5.5e-09	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	313 - 396	4.6e-34	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28350 AT2G28350
fragaria_vesca	FvH4_3g32000 FvH4_3g32000 FvH4_6g15960 FvH4_6g15960 FvH4_6g15960
malus_domestica	MD03G1119500.v1.1 MD03G1119700.v1.1 MD04G1096900.v1.1
prunus_persica	Prupe.6G102800_v2.0.a1 Prupe.6G102800_v2.0.a1 Prupe.6G102800_v2.0.a1 Prupe.6G236200_v2.0.a1 Prupe.6G236200_v2.0.a1 Prupe.6G236200_v2.0.a1
pyrus_communis	pycom04g09200 pycom11g11370 pycom12g11700
rosa_chinensis	RchiOBHm_Chr3g0469661 RchiOBHm_Chr5g0058761
rosa_laevigata	RLG00000024330 RLG00000035245
rosa_multiflora	Rmu_sc0000367.1_g000238 Rmu_sc0006483.1_g000023 Rmu_sc0030116.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021650 Rroxscaffold_6G00411580
rosa_rugosa	Rorug03G0103100 Rorug03G0103200 Rorug03G0103300 Rorug05G0317900
rosa_samantha	Rh3AG152700 Rh3BG176500 Rh3CG167500 Rh3DG199100 Rh5AG383600 Rh5BG395500 Rh5CG419200 Rh5DG410900
rosa_wichuraiana	Rw3G014400 Rw5G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1571
AccB1I	GGYRCC	1 cut(s)	984
AccB7I	CCANNNNNTGG	3 cut(s)	567, 719, 743
AccII	CGCG	2 cut(s)	445, 1202
AclWI	GGATC	5 cut(s)	50, 230, 970, 1198, 1753
AcsI	RAATTY	2 cut(s)	935, 1484
AcuI	CTGAAG	2 cut(s)	684, 885
AcyI	GRCGYC	1 cut(s)	1568
AdeI	CACNNNGTG	1 cut(s)	567
AfaI	GTAC	6 cut(s)	574, 730, 928, 1805, 1928, 1999
AfeI	AGCGCT	1 cut(s)	1778
AfiI	CCNNNNNNNGG	9 cut(s)	222, 267, 284, 546, 567, 719, 743, 1174, 1274
AflIII	ACRYGT	1 cut(s)	1159
AgeI	ACCGGT	1 cut(s)	103
AgsI	TTSAA	8 cut(s)	21, 34, 95, 283, 1003, 1016, 1148, 1274
AjnI	CCWGG	3 cut(s)	1116, 1124, 1373
AjuI	GAANNNNNNNTTGG	2 cut(s)	938, 970
AluBI	AGCT	5 cut(s)	64, 595, 869, 1603, 1656
AluI	AGCT	5 cut(s)	64, 595, 869, 1603, 1656
Alw21I	GWGCWC	1 cut(s)	1986
Alw26I	GTCTC	4 cut(s)	236, 1237, 1675, 1961
AlwI	GGATC	5 cut(s)	50, 230, 970, 1198, 1753
Ama87I	CYCGRG	1 cut(s)	1094
Aor51HI	AGCGCT	1 cut(s)	1778
AoxI	GGCC	6 cut(s)	136, 848, 948, 1008, 1091, 1276
ApoI	RAATTY	2 cut(s)	935, 1484
AsiGI	ACCGGT	1 cut(s)	103
AspA2I	CCTAGG	1 cut(s)	542
AspLEI	GCGC	3 cut(s)	80, 1089, 1779
AspS9I	GGNCC	7 cut(s)	136, 158, 537, 686, 848, 1092, 1316
AsuC2I	CCSGG	3 cut(s)	209, 990, 1033
AsuHPI	GGTGA	9 cut(s)	118, 515, 650, 970, 1092, 1480, 1513, 1665, 1748
AsuII	TTCGAA	1 cut(s)	815
AvaI	CYCGRG	1 cut(s)	1094
AvaII	GGWCC	4 cut(s)	158, 537, 686, 1316
AvrII	CCTAGG	1 cut(s)	542
AxyI	CCTNAGG	1 cut(s)	132
BaeGI	GKGCMC	1 cut(s)	989
BanI	GGYRCC	1 cut(s)	984
BbsI	GAAGAC	2 cut(s)	112, 1881
Bbv12I	GWGCWC	1 cut(s)	1986
BbvCI	CCTCAGC	1 cut(s)	60
BccI	CCATC	6 cut(s)	305, 443, 1000, 1215, 1697, 1988
BceAI	ACGGC	1 cut(s)	2067
BcgI	CGANNNNNNTGC	2 cut(s)	1691, 1725
BciT130I	CCWGG	3 cut(s)	1118, 1126, 1375
BciVI	GTATCC	2 cut(s)	1198, 1804
BcnI	CCSGG	3 cut(s)	209, 990, 1033
BcoDI	GTCTC	4 cut(s)	236, 1237, 1675, 1961
BfaI	CTAG	3 cut(s)	543, 827, 918
BfoI	RGCGCY	1 cut(s)	1780
BfuI	GTATCC	2 cut(s)	1198, 1804
BglII	AGATCT	2 cut(s)	1432, 1641
BlnI	CCTAGG	1 cut(s)	542
BlpI	GCTNAGC	2 cut(s)	144, 1077
Bme1390I	CCNGG	6 cut(s)	209, 990, 1033, 1118, 1126, 1375
Bme18I	GGWCC	4 cut(s)	158, 537, 686, 1316
BmeT110I	CYCGRG	1 cut(s)	1094
BmgT120I	GGNCC	7 cut(s)	136, 158, 537, 686, 848, 1092, 1316
BmiI	GGNNCC	6 cut(s)	276, 538, 539, 986, 1318, 1372
BmrFI	CCNGG	6 cut(s)	209, 990, 1033, 1118, 1126, 1375
BmrI	ACTGGG	1 cut(s)	464
BmsI	GCATC	2 cut(s)	376, 559
BmuI	ACTGGG	1 cut(s)	464
BoxI	GACNNNNGTC	2 cut(s)	691, 1881
BpiI	GAAGAC	2 cut(s)	112, 1881
BplI	GAGNNNNNCTC	2 cut(s)	1234, 1266
BpmI	CTGGAG	1 cut(s)	1100
Bpu10I	CCTNAGC	2 cut(s)	60, 489
Bpu1102I	GCTNAGC	2 cut(s)	144, 1077
Bpu14I	TTCGAA	1 cut(s)	815
BpuMI	CCSGG	3 cut(s)	209, 990, 1033
BsaHI	GRCGYC	1 cut(s)	1568
BsaJI	CCNNGG	8 cut(s)	114, 542, 561, 988, 1103, 1125, 1169, 1312
BsaWI	WCCGGW	4 cut(s)	103, 688, 978, 1685
Bsc4I	CCNNNNNNNGG	9 cut(s)	222, 267, 284, 546, 567, 719, 743, 1174, 1274
Bse118I	RCCGGY	2 cut(s)	80, 103
Bse1I	ACTGG	5 cut(s)	470, 1676, 1849, 1941, 2005
Bse21I	CCTNAGG	1 cut(s)	132
Bse3DI	GCAATG	2 cut(s)	802, 968
BseBI	CCWGG	3 cut(s)	1118, 1126, 1375
BseDI	CCNNGG	8 cut(s)	114, 542, 561, 988, 1103, 1125, 1169, 1312
BseGI	GGATG	4 cut(s)	313, 499, 775, 1135
BseLI	CCNNNNNNNGG	9 cut(s)	222, 267, 284, 546, 567, 719, 743, 1174, 1274
BseMI	GCAATG	2 cut(s)	802, 968
BseMII	CTCAG	9 cut(s)	74, 135, 146, 231, 1011, 1068, 1623, 1640, 1956
BseNI	ACTGG	5 cut(s)	470, 1676, 1849, 1941, 2005
BseSI	GKGCMC	1 cut(s)	989
BseYI	CCCAGC	1 cut(s)	1319
BsgI	GTGCAG	5 cut(s)	447, 1409, 1458, 1734, 2025
Bsh1236I	CGCG	2 cut(s)	445, 1202
BshFI	GGCC	6 cut(s)	138, 850, 950, 1010, 1093, 1278
BshNI	GGYRCC	1 cut(s)	984
BshTI	ACCGGT	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	1986
BsiHKCI	CYCGRG	1 cut(s)	1094
BslFI	GGGAC	2 cut(s)	550, 620
BslI	CCNNNNNNNGG	9 cut(s)	222, 267, 284, 546, 567, 719, 743, 1174, 1274
BsmAI	GTCTC	4 cut(s)	236, 1237, 1675, 1961
BsmFI	GGGAC	2 cut(s)	550, 620
BsmI	GAATGC	2 cut(s)	115, 1714
BsnI	GGCC	6 cut(s)	138, 850, 950, 1010, 1093, 1278
BsoBI	CYCGRG	1 cut(s)	1094
Bsp119I	TTCGAA	1 cut(s)	815
Bsp1286I	GDGCHC	2 cut(s)	989, 1986
Bsp1407I	TGTACA	1 cut(s)	1926
Bsp143I	GATC	8 cut(s)	55, 235, 640, 975, 1203, 1432, 1641, 1745
Bsp1720I	GCTNAGC	2 cut(s)	144, 1077
Bsp19I	CCATGG	1 cut(s)	1169
BspANI	GGCC	6 cut(s)	138, 850, 950, 1010, 1093, 1278
BspCNI	CTCAG	9 cut(s)	73, 136, 145, 232, 1012, 1069, 1624, 1641, 1957
BspFNI	CGCG	2 cut(s)	445, 1202
BspLI	GGNNCC	6 cut(s)	276, 538, 539, 986, 1318, 1372
BspPI	GGATC	5 cut(s)	50, 230, 970, 1198, 1753
BspT104I	TTCGAA	1 cut(s)	815
BspT107I	GGYRCC	1 cut(s)	984
BsrDI	GCAATG	2 cut(s)	802, 968
BsrFI	RCCGGY	2 cut(s)	80, 103
BsrGI	TGTACA	1 cut(s)	1926
BsrI	ACTGG	5 cut(s)	470, 1676, 1849, 1941, 2005
BssAI	RCCGGY	2 cut(s)	80, 103
BssECI	CCNNGG	8 cut(s)	114, 542, 561, 988, 1103, 1125, 1169, 1312
BssMI	GATC	8 cut(s)	55, 235, 640, 975, 1203, 1432, 1641, 1745
BssNI	GRCGYC	1 cut(s)	1568
BssT1I	CCWWGG	5 cut(s)	114, 542, 1103, 1169, 1312
Bst2UI	CCWGG	3 cut(s)	1118, 1126, 1375
Bst4CI	ACNGT	3 cut(s)	733, 1669, 1853
BstACI	GRCGYC	1 cut(s)	1568
BstAPI	GCANNNNNTGC	1 cut(s)	878
BstAUI	TGTACA	1 cut(s)	1926
BstBI	TTCGAA	1 cut(s)	815
BstDSI	CCRYGG	2 cut(s)	561, 1169
BstEII	GGTNACC	1 cut(s)	1120
BstENI	CCTNNNNNAGG	1 cut(s)	1272
BstF5I	GGATG	4 cut(s)	313, 499, 775, 1135
BstFNI	CGCG	2 cut(s)	445, 1202
BstH2I	RGCGCY	1 cut(s)	1780
BstHHI	GCGC	3 cut(s)	80, 1089, 1779
BstKTI	GATC	8 cut(s)	58, 238, 643, 978, 1206, 1435, 1644, 1748
BstMAI	GTCTC	4 cut(s)	236, 1237, 1675, 1961
BstMBI	GATC	8 cut(s)	55, 235, 640, 975, 1203, 1432, 1641, 1745
BstMWI	GCNNNNNNNGC	7 cut(s)	84, 149, 362, 878, 1379, 1600, 1659
BstNI	CCWGG	3 cut(s)	1118, 1126, 1375
BstNSI	RCATGY	5 cut(s)	74, 152, 1198, 1366, 1382
BstPAI	GACNNNNGTC	2 cut(s)	691, 1881
BstPI	GGTNACC	1 cut(s)	1120
BstSCI	CCNGG	6 cut(s)	207, 988, 1031, 1116, 1124, 1373
BstSLI	GKGCMC	1 cut(s)	989
BstUI	CGCG	2 cut(s)	445, 1202
BstV2I	GAAGAC	2 cut(s)	112, 1881
BstX2I	RGATCY	5 cut(s)	55, 975, 1432, 1641, 1745
BstXI	CCANNNNNNTGG	1 cut(s)	1498
BstYI	RGATCY	5 cut(s)	55, 975, 1432, 1641, 1745
Bsu36I	CCTNAGG	1 cut(s)	132
BsuI	GTATCC	2 cut(s)	1198, 1804
BsuRI	GGCC	6 cut(s)	138, 850, 950, 1010, 1093, 1278
BtgI	CCRYGG	2 cut(s)	561, 1169
BtsCI	GGATG	4 cut(s)	313, 499, 775, 1135
BtsI	GCAGTG	1 cut(s)	1223
BtsIMutI	CAGTG	4 cut(s)	1223, 1849, 1970, 2041
CfoI	GCGC	3 cut(s)	80, 1089, 1779
Cfr10I	RCCGGY	2 cut(s)	80, 103
Cfr13I	GGNCC	7 cut(s)	136, 158, 537, 686, 848, 1092, 1316
CseI	GACGC	1 cut(s)	385
Csp6I	GTAC	6 cut(s)	573, 729, 927, 1804, 1927, 1998
CspAI	ACCGGT	1 cut(s)	103
CspCI	CAANNNNNGTGG	2 cut(s)	382, 417
CviQI	GTAC	6 cut(s)	573, 729, 927, 1804, 1927, 1998
DpnI	GATC	8 cut(s)	57, 237, 642, 977, 1205, 1434, 1643, 1747
DpnII	GATC	8 cut(s)	55, 235, 640, 975, 1203, 1432, 1641, 1745
DraIII	CACNNNGTG	1 cut(s)	567
Eco130I	CCWWGG	5 cut(s)	114, 542, 1103, 1169, 1312
Eco147I	AGGCCT	1 cut(s)	950
Eco47I	GGWCC	4 cut(s)	158, 537, 686, 1316
Eco47III	AGCGCT	1 cut(s)	1778
Eco57I	CTGAAG	2 cut(s)	684, 885
Eco81I	CCTNAGG	1 cut(s)	132
Eco88I	CYCGRG	1 cut(s)	1094
Eco91I	GGTNACC	1 cut(s)	1120
EcoNI	CCTNNNNNAGG	1 cut(s)	1272
EcoO109I	RGGNCCY	1 cut(s)	537
EcoO65I	GGTNACC	1 cut(s)	1120
EcoRI	GAATTC	1 cut(s)	935
EcoRII	CCWGG	3 cut(s)	1116, 1124, 1373
EcoT14I	CCWWGG	5 cut(s)	114, 542, 1103, 1169, 1312
ErhI	CCWWGG	5 cut(s)	114, 542, 1103, 1169, 1312
FalI	AAGNNNNNCTT	4 cut(s)	995, 1027, 1266, 1298
FaqI	GGGAC	2 cut(s)	550, 620
FauI	CCCGC	4 cut(s)	289, 361, 1207, 1461
FauNDI	CATATG	1 cut(s)	739
FokI	GGATG	4 cut(s)	320, 506, 782, 1142
FspBI	CTAG	3 cut(s)	543, 827, 918
GlaI	GCGC	3 cut(s)	79, 1088, 1778
GsaI	CCCAGC	1 cut(s)	1323
GsuI	CTGGAG	1 cut(s)	1100
HaeII	RGCGCY	1 cut(s)	1780
HaeIII	GGCC	6 cut(s)	138, 850, 950, 1010, 1093, 1278
HgaI	GACGC	1 cut(s)	385
HhaI	GCGC	3 cut(s)	80, 1089, 1779
Hin1I	GRCGYC	1 cut(s)	1568
Hin6I	GCGC	3 cut(s)	78, 1087, 1777
HinP1I	GCGC	3 cut(s)	78, 1087, 1777
HindIII	AAGCTT	1 cut(s)	593
HphI	GGTGA	9 cut(s)	118, 515, 650, 970, 1092, 1480, 1513, 1665, 1748
Hpy166II	GTNNAC	4 cut(s)	158, 583, 686, 910
Hpy188III	TCNNGA	9 cut(s)	172, 239, 652, 1003, 1743, 1838, 1892, 1991, 2044
Hpy8I	GTNNAC	4 cut(s)	158, 583, 686, 910
Hpy99I	CGWCG	2 cut(s)	663, 1570
HpyAV	CCTTC	4 cut(s)	28, 940, 1268, 1784
HpyCH4III	ACNGT	3 cut(s)	733, 1669, 1853
HpyCH4IV	ACGT	4 cut(s)	1159, 1568, 1878, 2094
HpyF10VI	GCNNNNNNNGC	7 cut(s)	84, 149, 362, 878, 1379, 1600, 1659
HpySE526I	ACGT	4 cut(s)	1159, 1568, 1878, 2094
Hsp92I	GRCGYC	1 cut(s)	1568
HspAI	GCGC	3 cut(s)	78, 1087, 1777
KflI	GGGWCCC	1 cut(s)	537
KroI	GCCGGC	1 cut(s)	80
KroNI	GCCGGC	1 cut(s)	82
Kzo9I	GATC	8 cut(s)	55, 235, 640, 975, 1203, 1432, 1641, 1745
LmnI	GCTCC	1 cut(s)	1370
LweI	GCATC	2 cut(s)	376, 559
MaeI	CTAG	3 cut(s)	543, 827, 918
MaeII	ACGT	4 cut(s)	1159, 1568, 1878, 2094
MaeIII	GTNAC	5 cut(s)	1098, 1120, 1551, 1847, 2036
MalI	GATC	8 cut(s)	57, 237, 642, 977, 1205, 1434, 1643, 1747
MboI	GATC	8 cut(s)	55, 235, 640, 975, 1203, 1432, 1641, 1745
MboII	GAAGA	6 cut(s)	112, 690, 1020, 1249, 1886, 2036
MfeI	CAATTG	1 cut(s)	612
MflI	RGATCY	5 cut(s)	55, 975, 1432, 1641, 1745
MhlI	GDGCHC	2 cut(s)	989, 1986
MlyI	GAGTC	3 cut(s)	602, 701, 1106
MmeI	TCCRAC	1 cut(s)	1215
MreI	CGCCGGCG	1 cut(s)	80
MroNI	GCCGGC	1 cut(s)	80
MseI	TTAA	4 cut(s)	327, 519, 557, 2010
MslI	CAYNNNNRTG	1 cut(s)	153
MspR9I	CCNGG	6 cut(s)	209, 990, 1033, 1118, 1126, 1375
MunI	CAATTG	1 cut(s)	612
Mva1269I	GAATGC	2 cut(s)	115, 1714
MvaI	CCWGG	3 cut(s)	1118, 1126, 1375
MvnI	CGCG	2 cut(s)	445, 1202
MwoI	GCNNNNNNNGC	7 cut(s)	84, 149, 362, 878, 1379, 1600, 1659
NaeI	GCCGGC	1 cut(s)	82
NciI	CCSGG	3 cut(s)	209, 990, 1033
NcoI	CCATGG	1 cut(s)	1169
NdeI	CATATG	1 cut(s)	739
NdeII	GATC	8 cut(s)	55, 235, 640, 975, 1203, 1432, 1641, 1745
NgoMIV	GCCGGC	1 cut(s)	80
NlaIV	GGNNCC	6 cut(s)	276, 538, 539, 986, 1318, 1372
NmeAIII	GCCGAG	1 cut(s)	731
NmuCI	GTSAC	4 cut(s)	1098, 1551, 1847, 2036
NspI	RCATGY	5 cut(s)	74, 152, 1198, 1366, 1382
NspV	TTCGAA	1 cut(s)	815
PaeI	GCATGC	4 cut(s)	74, 152, 1366, 1382
PceI	AGGCCT	1 cut(s)	950
PctI	GAATGC	2 cut(s)	115, 1714
PdiI	GCCGGC	1 cut(s)	82
PflFI	GACNNNGTC	1 cut(s)	1549
PflMI	CCANNNNNTGG	3 cut(s)	567, 719, 743
PfoI	TCCNGGA	1 cut(s)	1031
PinAI	ACCGGT	1 cut(s)	103
PleI	GAGTC	3 cut(s)	602, 700, 1105
PpsI	GAGTC	3 cut(s)	602, 700, 1105
PpuMI	RGGWCCY	1 cut(s)	537
PshAI	GACNNNNGTC	2 cut(s)	691, 1881
Psp5II	RGGWCCY	1 cut(s)	537
Psp6I	CCWGG	3 cut(s)	1116, 1124, 1373
PspEI	GGTNACC	1 cut(s)	1120
PspFI	CCCAGC	1 cut(s)	1319
PspGI	CCWGG	3 cut(s)	1116, 1124, 1373
PspN4I	GGNNCC	6 cut(s)	276, 538, 539, 986, 1318, 1372
PspPI	GGNCC	7 cut(s)	136, 158, 537, 686, 848, 1092, 1316
PspPPI	RGGWCCY	1 cut(s)	537
PsrI	GAACNNNNNNTAC	2 cut(s)	1125, 1157
PsuI	RGATCY	5 cut(s)	55, 975, 1432, 1641, 1745
PsyI	GACNNNGTC	1 cut(s)	1549
RsaI	GTAC	6 cut(s)	574, 730, 928, 1805, 1928, 1999
RsaNI	GTAC	6 cut(s)	573, 729, 927, 1804, 1927, 1998
RseI	CAYNNNNRTG	1 cut(s)	153
SaqAI	TTAA	4 cut(s)	327, 519, 557, 2010
Sau3AI	GATC	8 cut(s)	55, 235, 640, 975, 1203, 1432, 1641, 1745
Sau96I	GGNCC	7 cut(s)	136, 158, 537, 686, 848, 1092, 1316
SchI	GAGTC	3 cut(s)	602, 701, 1106
ScrFI	CCNGG	6 cut(s)	209, 990, 1033, 1118, 1126, 1375
SduI	GDGCHC	2 cut(s)	989, 1986
SfaNI	GCATC	2 cut(s)	376, 559
SfuI	TTCGAA	1 cut(s)	815
SgrAI	CRCCGGYG	2 cut(s)	80, 103
SinI	GGWCC	4 cut(s)	158, 537, 686, 1316
SmiMI	CAYNNNNRTG	1 cut(s)	153
SphI	GCATGC	4 cut(s)	74, 152, 1366, 1382
SseBI	AGGCCT	1 cut(s)	950
SspMI	CTAG	3 cut(s)	543, 827, 918
StuI	AGGCCT	1 cut(s)	950
StyD4I	CCNGG	6 cut(s)	207, 988, 1031, 1116, 1124, 1373
StyI	CCWWGG	5 cut(s)	114, 542, 1103, 1169, 1312
TaaI	ACNGT	3 cut(s)	733, 1669, 1853
TaiI	ACGT	4 cut(s)	1162, 1571, 1881, 2097
TaqI	TCGA	5 cut(s)	291, 661, 815, 1816, 1990
TatI	WGTACW	2 cut(s)	728, 1926
TauI	GCSGC	3 cut(s)	87, 218, 550
Tru1I	TTAA	4 cut(s)	327, 519, 557, 2010
Tru9I	TTAA	4 cut(s)	327, 519, 557, 2010
TscAI	CASTG	4 cut(s)	1230, 1856, 1977, 2041
TseFI	GTSAC	4 cut(s)	1098, 1551, 1847, 2036
Tsp45I	GTSAC	4 cut(s)	1098, 1551, 1847, 2036
TspDTI	ATGAA	8 cut(s)	217, 488, 1036, 1146, 1496, 1524, 1836, 1935
TspRI	CASTG	4 cut(s)	1230, 1856, 1977, 2041
Tth111I	GACNNNGTC	1 cut(s)	1549
Van91I	CCANNNNNTGG	3 cut(s)	567, 719, 743
VpaK11BI	GGWCC	4 cut(s)	158, 537, 686, 1316
XagI	CCTNNNNNAGG	1 cut(s)	1272
XapI	RAATTY	2 cut(s)	935, 1484
XceI	RCATGY	5 cut(s)	74, 152, 1198, 1366, 1382
XcmI	CCANNNNNNNNNTGG	2 cut(s)	226, 268
XmaJI	CCTAGG	1 cut(s)	542
XspI	CTAG	3 cut(s)	543, 827, 918
ZraI	GACGTC	1 cut(s)	1569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.