Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0002309

Physical Location & Seq

Genomic Coordinates Forward (+)

11640962 .. 11642343

Gene Structure 1382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g09200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGATCGATCTCTGTGTCGGGATTCGTCGAGCAAAGAGGGGAAGTGGAAGTGGACCAGAGTCATCTTCAGGGTGGAATCCAATGGGTGGGAATTGTACTGTGCCATATGGTGGATTCTCGGCGTTTTTGAGGGAGGATGAGAACAAACTAATGAGAAATGGCAATGGTAATAGCTCTAATTCGAATGGAAGTCTAGTGGGTAAGGGGAAAGTCGGGCCTGAATCTGTTTCTGAAGCTGCAACACTTGCTGCAAATGGACAGCCCTTTGAGGTTGTTTACTACCCTAGAGCAAGTACCCCAGAATTCTGTGTGAAGGCCTCATTGGTGAAAGCAGCATTGCAGATCCGGTGGTGCCCTGGAATGCGATTCAAGATGGCCTTTGAAACTGAGGATTCTTCCCGGATAAGTTGGTTCATGGGAACTATATCCTCTGTTCAGGTTGCTGAGCCTTTGCGCTGGCCCGAGTCACCTTGGAGGCTTCTCCAGGTTACCTGGGATGAACCCGATTTACTTCAAAATGTGAAACGCGTTAGCCCATGGTTGGTAGAGTTGGTATCCAACATGCGCGCGATCCATCTGACACCTTTCTCACTGCCAAGAAAGAAGATGAGACTACCTCAATACCCAGATTTCCCTTTTGAAGGCCAACTTCCAATGCCGACTTTTTCCGGCAACCTCCTTGGACCCAGCAGCCCCTTTGGTTGTCTGCCCGACAAAACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTCTATCCTCATCAGATATGCACCTCAATAAACTGCACACGGGTCTATTTCCGGCTGGTTTCCCGCCACATTGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

279

Amino Acids

30.56

Weight (kDa)

8.99

Isoelectric Point (pI)

57.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRWD_AD	PF25313	83 - 185	1.1e-09	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	102 - 185	1e-34	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28350 AT2G28350
fragaria_vesca	FvH4_3g32000 FvH4_3g32000 FvH4_6g15960 FvH4_6g15960 FvH4_6g15960
malus_domestica	MD03G1119500.v1.1 MD03G1119700.v1.1 MD04G1096900.v1.1
prunus_persica	Prupe.6G102800_v2.0.a1 Prupe.6G102800_v2.0.a1 Prupe.6G102800_v2.0.a1 Prupe.6G236200_v2.0.a1 Prupe.6G236200_v2.0.a1 Prupe.6G236200_v2.0.a1
pyrus_communis	pycom04g09200 pycom11g11370 pycom12g11700
rosa_chinensis	RchiOBHm_Chr3g0469661 RchiOBHm_Chr5g0058761
rosa_laevigata	RLG00000024330 RLG00000035245
rosa_multiflora	Rmu_sc0000367.1_g000238 Rmu_sc0006483.1_g000023 Rmu_sc0030116.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021650 Rroxscaffold_6G00411580
rosa_rugosa	Rorug03G0103100 Rorug03G0103200 Rorug03G0103300 Rorug05G0317900
rosa_samantha	Rh3AG152700 Rh3BG176500 Rh3CG167500 Rh3DG199100 Rh5AG383600 Rh5BG395500 Rh5CG419200 Rh5DG410900
rosa_wichuraiana	Rw3G014400 Rw5G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	351
AccB7I	CCANNNNNTGG	2 cut(s)	86, 110
AccII	CGCG	3 cut(s)	528, 567, 569
AciI	CCGC	1 cut(s)	821
AclWI	GGATC	2 cut(s)	337, 565
AcsI	RAATTY	1 cut(s)	302
AcuI	CTGAAG	2 cut(s)	51, 252
AfaI	GTAC	2 cut(s)	97, 295
AfiI	CCNNNNNNNGG	4 cut(s)	86, 110, 541, 641
AflIII	ACRYGT	1 cut(s)	526
AgsI	TTSAA	4 cut(s)	370, 383, 515, 641
AjnI	CCWGG	4 cut(s)	355, 483, 491, 740
AjuI	GAANNNNNNNTTGG	2 cut(s)	305, 337
AluBI	AGCT	2 cut(s)	174, 236
AluI	AGCT	2 cut(s)	174, 236
Alw26I	GTCTC	1 cut(s)	604
AlwI	GGATC	2 cut(s)	337, 565
Ama87I	CYCGRG	1 cut(s)	461
AoxI	GGCC	5 cut(s)	215, 315, 375, 458, 643
ApeKI	GCWGC	4 cut(s)	236, 248, 332, 690
ApoI	RAATTY	1 cut(s)	302
AspLEI	GCGC	3 cut(s)	456, 567, 569
AspS9I	GGNCC	4 cut(s)	53, 215, 459, 683
AsuC2I	CCSGG	1 cut(s)	400
AsuHPI	GGTGA	2 cut(s)	337, 459
AsuII	TTCGAA	1 cut(s)	182
AvaI	CYCGRG	1 cut(s)	461
AvaII	GGWCC	2 cut(s)	53, 683
BaeGI	GKGCMC	1 cut(s)	356
BanI	GGYRCC	1 cut(s)	351
BbvI	GCAGC	4 cut(s)	223, 235, 344, 702
BccI	CCATC	2 cut(s)	367, 582
BciT130I	CCWGG	4 cut(s)	357, 485, 493, 742
BciVI	GTATCC	1 cut(s)	565
BcnI	CCSGG	1 cut(s)	400
BcoDI	GTCTC	1 cut(s)	604
BfaI	CTAG	2 cut(s)	194, 285
BfuI	GTATCC	1 cut(s)	565
BisI	GCNGC	4 cut(s)	237, 249, 333, 691
BlpI	GCTNAGC	1 cut(s)	444
BlsI	GCNGC	4 cut(s)	238, 250, 334, 692
Bme1390I	CCNGG	5 cut(s)	357, 400, 485, 493, 742
Bme18I	GGWCC	2 cut(s)	53, 683
BmeT110I	CYCGRG	1 cut(s)	461
BmgT120I	GGNCC	4 cut(s)	53, 215, 459, 683
BmiI	GGNNCC	3 cut(s)	353, 685, 739
BmrFI	CCNGG	5 cut(s)	357, 400, 485, 493, 742
BoxI	GACNNNNGTC	1 cut(s)	58
BplI	GAGNNNNNCTC	2 cut(s)	601, 633
BpmI	CTGGAG	1 cut(s)	467
Bpu1102I	GCTNAGC	1 cut(s)	444
Bpu14I	TTCGAA	1 cut(s)	182
BpuMI	CCSGG	1 cut(s)	400
Bsa29I	ATCGAT	1 cut(s)	6
BsaJI	CCNNGG	5 cut(s)	355, 470, 492, 536, 679
BsaWI	WCCGGW	1 cut(s)	345
Bsc4I	CCNNNNNNNGG	4 cut(s)	86, 110, 541, 641
Bse3DI	GCAATG	2 cut(s)	169, 335
BseBI	CCWGG	4 cut(s)	357, 485, 493, 742
BseCI	ATCGAT	1 cut(s)	6
BseDI	CCNNGG	5 cut(s)	355, 470, 492, 536, 679
BseGI	GGATG	2 cut(s)	142, 502
BseLI	CCNNNNNNNGG	4 cut(s)	86, 110, 541, 641
BseMI	GCAATG	2 cut(s)	169, 335
BseMII	CTCAG	2 cut(s)	378, 435
BsePI	GCGCGC	1 cut(s)	565
BseSI	GKGCMC	1 cut(s)	356
BseXI	GCAGC	4 cut(s)	223, 235, 344, 702
BseYI	CCCAGC	1 cut(s)	686
BsgI	GTGCAG	1 cut(s)	776
Bsh1236I	CGCG	3 cut(s)	528, 567, 569
BshFI	GGCC	5 cut(s)	217, 317, 377, 460, 645
BshNI	GGYRCC	1 cut(s)	351
BshVI	ATCGAT	1 cut(s)	6
BsiHKCI	CYCGRG	1 cut(s)	461
BsiSI	CCGG	4 cut(s)	346, 400, 669, 809
BslI	CCNNNNNNNGG	4 cut(s)	86, 110, 541, 641
BsmAI	GTCTC	1 cut(s)	604
BsmI	GAATGC	1 cut(s)	366
BsnI	GGCC	5 cut(s)	217, 317, 377, 460, 645
BsoBI	CYCGRG	1 cut(s)	461
Bsp119I	TTCGAA	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	356
Bsp143I	GATC	4 cut(s)	3, 7, 342, 570
Bsp1720I	GCTNAGC	1 cut(s)	444
Bsp19I	CCATGG	1 cut(s)	536
BspACI	CCGC	1 cut(s)	821
BspANI	GGCC	5 cut(s)	217, 317, 377, 460, 645
BspCNI	CTCAG	2 cut(s)	379, 436
BspDI	ATCGAT	1 cut(s)	6
BspFNI	CGCG	3 cut(s)	528, 567, 569
BspLI	GGNNCC	3 cut(s)	353, 685, 739
BspPI	GGATC	2 cut(s)	337, 565
BspT104I	TTCGAA	1 cut(s)	182
BspT107I	GGYRCC	1 cut(s)	351
BsrDI	GCAATG	2 cut(s)	169, 335
BssECI	CCNNGG	5 cut(s)	355, 470, 492, 536, 679
BssHII	GCGCGC	1 cut(s)	565
BssMI	GATC	4 cut(s)	3, 7, 342, 570
BssT1I	CCWWGG	3 cut(s)	470, 536, 679
Bst2UI	CCWGG	4 cut(s)	357, 485, 493, 742
Bst4CI	ACNGT	1 cut(s)	100
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstBI	TTCGAA	1 cut(s)	182
BstC8I	GCNNGC	5 cut(s)	458, 567, 727, 731, 747
BstDEI	CTNAG	2 cut(s)	387, 444
BstDSI	CCRYGG	1 cut(s)	536
BstEII	GGTNACC	1 cut(s)	487
BstENI	CCTNNNNNAGG	1 cut(s)	639
BstF5I	GGATG	2 cut(s)	142, 502
BstFNI	CGCG	3 cut(s)	528, 567, 569
BstHHI	GCGC	3 cut(s)	456, 567, 569
BstKTI	GATC	4 cut(s)	6, 10, 345, 573
BstMAI	GTCTC	1 cut(s)	604
BstMBI	GATC	4 cut(s)	3, 7, 342, 570
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 746
BstNI	CCWGG	4 cut(s)	357, 485, 493, 742
BstNSI	RCATGY	3 cut(s)	565, 733, 749
BstPAI	GACNNNNGTC	1 cut(s)	58
BstPI	GGTNACC	1 cut(s)	487
BstSCI	CCNGG	5 cut(s)	355, 398, 483, 491, 740
BstSLI	GKGCMC	1 cut(s)	356
BstUI	CGCG	3 cut(s)	528, 567, 569
BstV1I	GCAGC	4 cut(s)	223, 235, 344, 702
BstX2I	RGATCY	1 cut(s)	342
BstYI	RGATCY	1 cut(s)	342
Bsu15I	ATCGAT	1 cut(s)	6
BsuI	GTATCC	1 cut(s)	565
BsuRI	GGCC	5 cut(s)	217, 317, 377, 460, 645
BsuTUI	ATCGAT	1 cut(s)	6
BtgI	CCRYGG	1 cut(s)	536
BtsCI	GGATG	2 cut(s)	142, 502
BtsI	GCAGTG	1 cut(s)	590
BtsIMutI	CAGTG	1 cut(s)	590
Cac8I	GCNNGC	5 cut(s)	458, 567, 727, 731, 747
CfoI	GCGC	3 cut(s)	456, 567, 569
Cfr13I	GGNCC	4 cut(s)	53, 215, 459, 683
ClaI	ATCGAT	1 cut(s)	6
Csp6I	GTAC	2 cut(s)	96, 294
CviAII	CATG	5 cut(s)	415, 537, 562, 730, 746
CviQI	GTAC	2 cut(s)	96, 294
DdeI	CTNAG	2 cut(s)	387, 444
DpnI	GATC	4 cut(s)	5, 9, 344, 572
DpnII	GATC	4 cut(s)	3, 7, 342, 570
Eco130I	CCWWGG	3 cut(s)	470, 536, 679
Eco147I	AGGCCT	1 cut(s)	317
Eco47I	GGWCC	2 cut(s)	53, 683
Eco57I	CTGAAG	2 cut(s)	51, 252
Eco88I	CYCGRG	1 cut(s)	461
Eco91I	GGTNACC	1 cut(s)	487
EcoNI	CCTNNNNNAGG	1 cut(s)	639
EcoO65I	GGTNACC	1 cut(s)	487
EcoRI	GAATTC	1 cut(s)	302
EcoRII	CCWGG	4 cut(s)	355, 483, 491, 740
EcoT14I	CCWWGG	3 cut(s)	470, 536, 679
ErhI	CCWWGG	3 cut(s)	470, 536, 679
FaeI	CATG	5 cut(s)	418, 540, 565, 733, 749
FalI	AAGNNNNNCTT	4 cut(s)	362, 394, 633, 665
FatI	CATG	5 cut(s)	414, 536, 561, 729, 745
FauI	CCCGC	1 cut(s)	828
FauNDI	CATATG	1 cut(s)	106
Fnu4HI	GCNGC	4 cut(s)	237, 249, 333, 691
FokI	GGATG	2 cut(s)	149, 509
Fsp4HI	GCNGC	4 cut(s)	237, 249, 333, 691
FspBI	CTAG	2 cut(s)	194, 285
GlaI	GCGC	3 cut(s)	455, 566, 568
GluI	GCNGC	4 cut(s)	237, 249, 333, 691
GsaI	CCCAGC	1 cut(s)	690
GsuI	CTGGAG	1 cut(s)	467
HaeIII	GGCC	5 cut(s)	217, 317, 377, 460, 645
HapII	CCGG	4 cut(s)	346, 400, 669, 809
HhaI	GCGC	3 cut(s)	456, 567, 569
Hin1II	CATG	5 cut(s)	418, 540, 565, 733, 749
Hin6I	GCGC	3 cut(s)	454, 565, 567
HinP1I	GCGC	3 cut(s)	454, 565, 567
HinfI	GANTC	8 cut(s)	22, 59, 76, 114, 221, 366, 392, 464
HpaII	CCGG	4 cut(s)	346, 400, 669, 809
HphI	GGTGA	2 cut(s)	337, 459
Hpy166II	GTNNAC	2 cut(s)	53, 277
Hpy188I	TCNGA	3 cut(s)	232, 579, 772
Hpy188III	TCNNGA	2 cut(s)	19, 370
Hpy8I	GTNNAC	2 cut(s)	53, 277
Hpy99I	CGWCG	1 cut(s)	30
HpyAV	CCTTC	2 cut(s)	307, 635
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4V	TGCA	6 cut(s)	239, 251, 340, 733, 778, 793
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 746
HpyF3I	CTNAG	2 cut(s)	387, 444
Hsp92II	CATG	5 cut(s)	418, 540, 565, 733, 749
HspAI	GCGC	3 cut(s)	454, 565, 567
Kzo9I	GATC	4 cut(s)	3, 7, 342, 570
LmnI	GCTCC	1 cut(s)	737
Lsp1109I	GCAGC	4 cut(s)	223, 235, 344, 702
MaeI	CTAG	2 cut(s)	194, 285
MaeIII	GTNAC	2 cut(s)	465, 487
MalI	GATC	4 cut(s)	5, 9, 344, 572
MboI	GATC	4 cut(s)	3, 7, 342, 570
MboII	GAAGA	3 cut(s)	57, 387, 616
MflI	RGATCY	1 cut(s)	342
MhlI	GDGCHC	1 cut(s)	356
MluCI	AATT	3 cut(s)	91, 178, 302
MluI	ACGCGT	1 cut(s)	526
MlyI	GAGTC	2 cut(s)	68, 473
MmeI	TCCRAC	1 cut(s)	582
MspI	CCGG	4 cut(s)	346, 400, 669, 809
MspR9I	CCNGG	5 cut(s)	357, 400, 485, 493, 742
Mva1269I	GAATGC	1 cut(s)	366
MvaI	CCWGG	4 cut(s)	357, 485, 493, 742
MvnI	CGCG	3 cut(s)	528, 567, 569
MwoI	GCNNNNNNNGC	2 cut(s)	245, 746
NciI	CCSGG	1 cut(s)	400
NcoI	CCATGG	1 cut(s)	536
NdeI	CATATG	1 cut(s)	106
NdeII	GATC	4 cut(s)	3, 7, 342, 570
NlaIII	CATG	5 cut(s)	418, 540, 565, 733, 749
NlaIV	GGNNCC	3 cut(s)	353, 685, 739
NmeAIII	GCCGAG	1 cut(s)	98
NmuCI	GTSAC	1 cut(s)	465
NspI	RCATGY	3 cut(s)	565, 733, 749
NspV	TTCGAA	1 cut(s)	182
PaeI	GCATGC	2 cut(s)	733, 749
PauI	GCGCGC	1 cut(s)	565
PceI	AGGCCT	1 cut(s)	317
PctI	GAATGC	1 cut(s)	366
PfeI	GAWTC	6 cut(s)	22, 76, 114, 221, 366, 392
PflMI	CCANNNNNTGG	2 cut(s)	86, 110
PfoI	TCCNGGA	1 cut(s)	398
PkrI	GCNGC	4 cut(s)	238, 250, 334, 692
PleI	GAGTC	2 cut(s)	67, 472
PpsI	GAGTC	2 cut(s)	67, 472
PshAI	GACNNNNGTC	1 cut(s)	58
Psp6I	CCWGG	4 cut(s)	355, 483, 491, 740
PspEI	GGTNACC	1 cut(s)	487
PspFI	CCCAGC	1 cut(s)	686
PspGI	CCWGG	4 cut(s)	355, 483, 491, 740
PspN4I	GGNNCC	3 cut(s)	353, 685, 739
PspPI	GGNCC	4 cut(s)	53, 215, 459, 683
PsrI	GAACNNNNNNTAC	2 cut(s)	492, 524
PsuI	RGATCY	1 cut(s)	342
PteI	GCGCGC	1 cut(s)	565
RsaI	GTAC	2 cut(s)	97, 295
RsaNI	GTAC	2 cut(s)	96, 294
SatI	GCNGC	4 cut(s)	237, 249, 333, 691
Sau3AI	GATC	4 cut(s)	3, 7, 342, 570
Sau96I	GGNCC	4 cut(s)	53, 215, 459, 683
SchI	GAGTC	2 cut(s)	68, 473
ScrFI	CCNGG	5 cut(s)	357, 400, 485, 493, 742
SduI	GDGCHC	1 cut(s)	356
SfuI	TTCGAA	1 cut(s)	182
SinI	GGWCC	2 cut(s)	53, 683
SphI	GCATGC	2 cut(s)	733, 749
Sse9I	AATT	3 cut(s)	91, 178, 302
SseBI	AGGCCT	1 cut(s)	317
SsiI	CCGC	1 cut(s)	821
SspMI	CTAG	2 cut(s)	194, 285
StuI	AGGCCT	1 cut(s)	317
StyD4I	CCNGG	5 cut(s)	355, 398, 483, 491, 740
StyI	CCWWGG	3 cut(s)	470, 536, 679
TaaI	ACNGT	1 cut(s)	100
TaqI	TCGA	3 cut(s)	6, 28, 182
TasI	AATT	3 cut(s)	91, 178, 302
TatI	WGTACW	1 cut(s)	95
TfiI	GAWTC	6 cut(s)	22, 76, 114, 221, 366, 392
TscAI	CASTG	1 cut(s)	597
TseFI	GTSAC	1 cut(s)	465
TseI	GCWGC	4 cut(s)	236, 248, 332, 690
Tsp45I	GTSAC	1 cut(s)	465
TspDTI	ATGAA	2 cut(s)	403, 513
TspRI	CASTG	1 cut(s)	597
Van91I	CCANNNNNTGG	2 cut(s)	86, 110
VpaK11BI	GGWCC	2 cut(s)	53, 683
XagI	CCTNNNNNAGG	1 cut(s)	639
XapI	RAATTY	1 cut(s)	302
XceI	RCATGY	3 cut(s)	565, 733, 749
XspI	CTAG	2 cut(s)	194, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.