Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G28350 AT2G28350 |
| fragaria_vesca | FvH4_3g32000 FvH4_3g32000 FvH4_6g15960 FvH4_6g15960 FvH4_6g15960 |
| malus_domestica | MD03G1119500.v1.1 MD03G1119700.v1.1 MD04G1096900.v1.1 |
| prunus_persica | Prupe.6G102800_v2.0.a1 Prupe.6G102800_v2.0.a1 Prupe.6G102800_v2.0.a1 Prupe.6G236200_v2.0.a1 Prupe.6G236200_v2.0.a1 Prupe.6G236200_v2.0.a1 |
| pyrus_communis | pycom04g09200 pycom11g11370 pycom12g11700 |
| rosa_chinensis | RchiOBHm_Chr3g0469661 RchiOBHm_Chr5g0058761 |
| rosa_laevigata | RLG00000024330 RLG00000035245 |
| rosa_multiflora | Rmu_sc0000367.1_g000238 Rmu_sc0006483.1_g000023 Rmu_sc0030116.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00021650 Rroxscaffold_6G00411580 |
| rosa_rugosa | Rorug03G0103100 Rorug03G0103200 Rorug03G0103300 Rorug05G0317900 |
| rosa_samantha | Rh3AG152700 Rh3BG176500 Rh3CG167500 Rh3DG199100 Rh5AG383600 Rh5BG395500 Rh5CG419200 Rh5DG410900 |
| rosa_wichuraiana | Rw3G014400 Rw5G036140 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 620 |
| AatII | GACGTC | 1 cut(s) | 471 |
| AccB1I | GGYRCC | 2 cut(s) | 509, 1201 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 540 |
| AccI | GTMKAC | 2 cut(s) | 1321, 2089 |
| AccII | CGCG | 1 cut(s) | 183 |
| AccIII | TCCGGA | 1 cut(s) | 316 |
| AclI | AACGTT | 1 cut(s) | 1268 |
| AclWI | GGATC | 3 cut(s) | 20, 33, 1940 |
| AcoI | YGGCCR | 4 cut(s) | 204, 870, 1483, 2034 |
| AcsI | RAATTY | 6 cut(s) | 781, 1180, 1453, 1461, 1772, 1991 |
| AcyI | GRCGYC | 2 cut(s) | 468, 1202 |
| AdeI | CACNNNGTG | 1 cut(s) | 540 |
| AfeI | AGCGCT | 1 cut(s) | 1736 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 240, 421, 519, 540, 645, 719 |
| AflIII | ACRYGT | 1 cut(s) | 2027 |
| AgeI | ACCGGT | 1 cut(s) | 1796 |
| AgsI | TTSAA | 3 cut(s) | 1675, 1765, 1778 |
| AjiI | CACGTC | 2 cut(s) | 133, 2030 |
| AjnI | CCWGG | 1 cut(s) | 1355 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2076, 2108 |
| AleI | CACNNNNGTG | 1 cut(s) | 551 |
| AluBI | AGCT | 8 cut(s) | 21, 34, 568, 1049, 1171, 1629, 1781, 1856 |
| AluI | AGCT | 8 cut(s) | 21, 34, 568, 1049, 1171, 1629, 1781, 1856 |
| Alw21I | GWGCWC | 3 cut(s) | 120, 548, 977 |
| Alw26I | GTCTC | 3 cut(s) | 398, 998, 2005 |
| AlwI | GGATC | 3 cut(s) | 20, 33, 1940 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1724 |
| Ama87I | CYCGRG | 2 cut(s) | 415, 1295 |
| Aor13HI | TCCGGA | 1 cut(s) | 316 |
| Aor51HI | AGCGCT | 1 cut(s) | 1736 |
| AoxI | GGCC | 8 cut(s) | 204, 636, 836, 870, 936, 1079, 1483, 2034 |
| ApeKI | GCWGC | 4 cut(s) | 857, 1305, 1612, 1629 |
| ApoI | RAATTY | 6 cut(s) | 781, 1180, 1453, 1461, 1772, 1991 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 212, 244, 2101, 2133 |
| AsiGI | ACCGGT | 1 cut(s) | 1796 |
| AspLEI | GCGC | 4 cut(s) | 50, 401, 1204, 1737 |
| AspS9I | GGNCC | 6 cut(s) | 61, 247, 280, 636, 1299, 2114 |
| AsuC2I | CCSGG | 3 cut(s) | 212, 538, 721 |
| AsuHPI | GGTGA | 6 cut(s) | 88, 466, 958, 1120, 1203, 2000 |
| AvaI | CYCGRG | 2 cut(s) | 415, 1295 |
| AvaII | GGWCC | 5 cut(s) | 61, 247, 280, 1299, 2114 |
| AxyI | CCTNAGG | 1 cut(s) | 840 |
| BalI | TGGCCA | 1 cut(s) | 1485 |
| BamHI | GGATCC | 1 cut(s) | 25 |
| BanI | GGYRCC | 2 cut(s) | 509, 1201 |
| BbsI | GAAGAC | 2 cut(s) | 82, 220 |
| Bbv12I | GWGCWC | 3 cut(s) | 120, 548, 977 |
| BbvCI | CCTCAGC | 1 cut(s) | 30 |
| BbvI | GCAGC | 4 cut(s) | 844, 1317, 1616, 1624 |
| BccI | CCATC | 3 cut(s) | 296, 1282, 1901 |
| BceAI | ACGGC | 5 cut(s) | 490, 625, 697, 700, 868 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 254, 288, 946, 980, 1276, 1310, 1604, 1638 |
| BciT130I | CCWGG | 1 cut(s) | 1357 |
| BciVI | GTATCC | 2 cut(s) | 1244, 1786 |
| BcnI | CCSGG | 3 cut(s) | 212, 538, 721 |
| BcoDI | GTCTC | 3 cut(s) | 398, 998, 2005 |
| BfaI | CTAG | 3 cut(s) | 1020, 1458, 1748 |
| BfmI | CTRYAG | 3 cut(s) | 1103, 1338, 1409 |
| BfoI | RGCGCY | 2 cut(s) | 1205, 1738 |
| BfuI | GTATCC | 2 cut(s) | 1244, 1786 |
| BglII | AGATCT | 1 cut(s) | 1617 |
| BisI | GCNGC | 9 cut(s) | 55, 181, 373, 858, 870, 954, 1306, 1613, 1630 |
| BlpI | GCTNAGC | 1 cut(s) | 1925 |
| BlsI | GCNGC | 9 cut(s) | 56, 182, 374, 859, 871, 955, 1307, 1614, 1631 |
| Bme1390I | CCNGG | 4 cut(s) | 212, 538, 721, 1357 |
| Bme18I | GGWCC | 5 cut(s) | 61, 247, 280, 1299, 2114 |
| BmeT110I | CYCGRG | 2 cut(s) | 415, 1295 |
| BmgBI | CACGTC | 2 cut(s) | 133, 2030 |
| BmgT120I | GGNCC | 6 cut(s) | 61, 247, 280, 636, 1299, 2114 |
| BmiI | GGNNCC | 8 cut(s) | 27, 249, 511, 680, 1042, 1203, 1300, 1354 |
| BmrFI | CCNGG | 4 cut(s) | 212, 538, 721, 1357 |
| BmrI | ACTGGG | 1 cut(s) | 346 |
| BmsI | GCATC | 3 cut(s) | 984, 1630, 2108 |
| BmuI | ACTGGG | 1 cut(s) | 346 |
| BpiI | GAAGAC | 2 cut(s) | 82, 220 |
| BpmI | CTGGAG | 2 cut(s) | 1618, 1992 |
| Bpu10I | CCTNAGC | 3 cut(s) | 30, 276, 976 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1925 |
| BpuEI | CTTGAG | 2 cut(s) | 87, 1751 |
| BpuMI | CCSGG | 3 cut(s) | 212, 538, 721 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1683 |
| BsaHI | GRCGYC | 2 cut(s) | 468, 1202 |
| BsaI | GGTCTC | 1 cut(s) | 398 |
| BsaWI | WCCGGW | 4 cut(s) | 73, 316, 1796, 1915 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 647, 677, 690, 720, 816, 846 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 240, 421, 519, 540, 645, 719 |
| Bse118I | RCCGGY | 5 cut(s) | 50, 442, 519, 575, 1796 |
| Bse1I | ACTGG | 6 cut(s) | 352, 1431, 1576, 1635, 1975, 2116 |
| Bse21I | CCTNAGG | 1 cut(s) | 840 |
| Bse3DI | GCAATG | 1 cut(s) | 1801 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1683 |
| BseAI | TCCGGA | 1 cut(s) | 316 |
| BseBI | CCWGG | 1 cut(s) | 1357 |
| BseGI | GGATG | 2 cut(s) | 1123, 1834 |
| BseJI | GATNNNNATC | 1 cut(s) | 1683 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 240, 421, 519, 540, 645, 719 |
| BseMI | GCAATG | 1 cut(s) | 1801 |
| BseMII | CTCAG | 8 cut(s) | 44, 290, 831, 990, 999, 1599, 1866, 1916 |
| BseNI | ACTGG | 6 cut(s) | 352, 1431, 1576, 1635, 1975, 2116 |
| BseRI | GAGGAG | 3 cut(s) | 139, 834, 837 |
| BseXI | GCAGC | 4 cut(s) | 844, 1317, 1616, 1624 |
| BseYI | CCCAGC | 1 cut(s) | 1737 |
| BsgI | GTGCAG | 2 cut(s) | 467, 986 |
| Bsh1236I | CGCG | 1 cut(s) | 183 |
| BshFI | GGCC | 8 cut(s) | 206, 638, 838, 872, 938, 1081, 1485, 2036 |
| BshNI | GGYRCC | 2 cut(s) | 509, 1201 |
| BshTI | ACCGGT | 1 cut(s) | 1796 |
| BsiHKAI | GWGCWC | 3 cut(s) | 120, 548, 977 |
| BsiHKCI | CYCGRG | 2 cut(s) | 415, 1295 |
| BslFI | GGGAC | 1 cut(s) | 233 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 240, 421, 519, 540, 645, 719 |
| BsmAI | GTCTC | 3 cut(s) | 398, 998, 2005 |
| BsmFI | GGGAC | 1 cut(s) | 233 |
| BsnI | GGCC | 8 cut(s) | 206, 638, 838, 872, 938, 1081, 1485, 2036 |
| Bso31I | GGTCTC | 1 cut(s) | 398 |
| BsoBI | CYCGRG | 2 cut(s) | 415, 1295 |
| Bsp1286I | GDGCHC | 3 cut(s) | 120, 548, 977 |
| Bsp13I | TCCGGA | 1 cut(s) | 316 |
| Bsp143I | GATC | 5 cut(s) | 25, 456, 1447, 1617, 1945 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1925 |
| Bsp19I | CCATGG | 1 cut(s) | 1157 |
| BspANI | GGCC | 8 cut(s) | 206, 638, 838, 872, 938, 1081, 1485, 2036 |
| BspCNI | CTCAG | 8 cut(s) | 43, 289, 832, 989, 1000, 1600, 1865, 1917 |
| BspEI | TCCGGA | 1 cut(s) | 316 |
| BspFNI | CGCG | 1 cut(s) | 183 |
| BspLI | GGNNCC | 8 cut(s) | 27, 249, 511, 680, 1042, 1203, 1300, 1354 |
| BspMAI | CTGCAG | 2 cut(s) | 1342, 1413 |
| BspPI | GGATC | 3 cut(s) | 20, 33, 1940 |
| BspT107I | GGYRCC | 2 cut(s) | 509, 1201 |
| BspTNI | GGTCTC | 1 cut(s) | 398 |
| BsrDI | GCAATG | 1 cut(s) | 1801 |
| BsrFI | RCCGGY | 5 cut(s) | 50, 442, 519, 575, 1796 |
| BsrI | ACTGG | 6 cut(s) | 352, 1431, 1576, 1635, 1975, 2116 |
| BssAI | RCCGGY | 5 cut(s) | 50, 442, 519, 575, 1796 |
| BssMI | GATC | 5 cut(s) | 25, 456, 1447, 1617, 1945 |
| BssNI | GRCGYC | 2 cut(s) | 468, 1202 |
| BssT1I | CCWWGG | 4 cut(s) | 283, 462, 1091, 1157 |
| Bst2UI | CCWGG | 1 cut(s) | 1357 |
| Bst4CI | ACNGT | 1 cut(s) | 454 |
| Bst6I | CTCTTC | 3 cut(s) | 741, 823, 1021 |
| BstACI | GRCGYC | 2 cut(s) | 468, 1202 |
| BstDSI | CCRYGG | 4 cut(s) | 472, 682, 1157, 1217 |
| BstF5I | GGATG | 2 cut(s) | 1123, 1834 |
| BstFNI | CGCG | 1 cut(s) | 183 |
| BstH2I | RGCGCY | 2 cut(s) | 1205, 1738 |
| BstHHI | GCGC | 4 cut(s) | 50, 401, 1204, 1737 |
| BstKTI | GATC | 5 cut(s) | 28, 459, 1450, 1620, 1948 |
| BstMAI | GTCTC | 3 cut(s) | 398, 998, 2005 |
| BstMBI | GATC | 5 cut(s) | 25, 456, 1447, 1617, 1945 |
| BstNI | CCWGG | 1 cut(s) | 1357 |
| BstNSI | RCATGY | 1 cut(s) | 1364 |
| BstSCI | CCNGG | 4 cut(s) | 210, 536, 719, 1355 |
| BstSFI | CTRYAG | 3 cut(s) | 1103, 1338, 1409 |
| BstUI | CGCG | 1 cut(s) | 183 |
| BstV1I | GCAGC | 4 cut(s) | 844, 1317, 1616, 1624 |
| BstV2I | GAAGAC | 2 cut(s) | 82, 220 |
| BstX2I | RGATCY | 3 cut(s) | 25, 1617, 1945 |
| BstYI | RGATCY | 3 cut(s) | 25, 1617, 1945 |
| Bsu36I | CCTNAGG | 1 cut(s) | 840 |
| BsuI | GTATCC | 2 cut(s) | 1244, 1786 |
| BsuRI | GGCC | 8 cut(s) | 206, 638, 838, 872, 938, 1081, 1485, 2036 |
| BtgI | CCRYGG | 4 cut(s) | 472, 682, 1157, 1217 |
| BtgZI | GCGATG | 1 cut(s) | 971 |
| BtrI | CACGTC | 2 cut(s) | 133, 2030 |
| BtsCI | GGATG | 2 cut(s) | 1123, 1834 |
| BtsI | GCAGTG | 1 cut(s) | 974 |
| BtsIMutI | CAGTG | 2 cut(s) | 974, 1642 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1724 |
| CfoI | GCGC | 4 cut(s) | 50, 401, 1204, 1737 |
| Cfr10I | RCCGGY | 5 cut(s) | 50, 442, 519, 575, 1796 |
| Cfr13I | GGNCC | 6 cut(s) | 61, 247, 280, 636, 1299, 2114 |
| CseI | GACGC | 3 cut(s) | 172, 368, 610 |
| CspAI | ACCGGT | 1 cut(s) | 1796 |
| DinI | GGCGCC | 1 cut(s) | 1203 |
| DpnI | GATC | 5 cut(s) | 27, 458, 1449, 1619, 1947 |
| DpnII | GATC | 5 cut(s) | 25, 456, 1447, 1617, 1945 |
| DraIII | CACNNNGTG | 1 cut(s) | 540 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 620 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 620 |
| EaeI | YGGCCR | 4 cut(s) | 204, 870, 1483, 2034 |
| Eam1104I | CTCTTC | 3 cut(s) | 741, 823, 1021 |
| EarI | CTCTTC | 3 cut(s) | 741, 823, 1021 |
| EciI | GGCGGA | 1 cut(s) | 421 |
| Eco130I | CCWWGG | 4 cut(s) | 283, 462, 1091, 1157 |
| Eco147I | AGGCCT | 2 cut(s) | 838, 938 |
| Eco31I | GGTCTC | 1 cut(s) | 398 |
| Eco47I | GGWCC | 5 cut(s) | 61, 247, 280, 1299, 2114 |
| Eco47III | AGCGCT | 1 cut(s) | 1736 |
| Eco81I | CCTNAGG | 1 cut(s) | 840 |
| Eco88I | CYCGRG | 2 cut(s) | 415, 1295 |
| EcoRI | GAATTC | 2 cut(s) | 781, 1461 |
| EcoRII | CCWGG | 1 cut(s) | 1355 |
| EcoT14I | CCWWGG | 4 cut(s) | 283, 462, 1091, 1157 |
| EgeI | GGCGCC | 1 cut(s) | 1203 |
| EheI | GGCGCC | 1 cut(s) | 1203 |
| ErhI | CCWWGG | 4 cut(s) | 283, 462, 1091, 1157 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1495, 1527 |
| FaqI | GGGAC | 1 cut(s) | 233 |
| FauI | CCCGC | 5 cut(s) | 151, 368, 447, 636, 1245 |
| FblI | GTMKAC | 2 cut(s) | 1321, 2089 |
| Fnu4HI | GCNGC | 9 cut(s) | 55, 181, 373, 858, 870, 954, 1306, 1613, 1630 |
| FokI | GGATG | 2 cut(s) | 1130, 1841 |
| Fsp4HI | GCNGC | 9 cut(s) | 55, 181, 373, 858, 870, 954, 1306, 1613, 1630 |
| FspBI | CTAG | 3 cut(s) | 1020, 1458, 1748 |
| GlaI | GCGC | 4 cut(s) | 49, 400, 1203, 1736 |
| GluI | GCNGC | 9 cut(s) | 55, 181, 373, 858, 870, 954, 1306, 1613, 1630 |
| GsaI | CCCAGC | 1 cut(s) | 1741 |
| GsuI | CTGGAG | 2 cut(s) | 1618, 1992 |
| HaeII | RGCGCY | 2 cut(s) | 1205, 1738 |
| HaeIII | GGCC | 8 cut(s) | 206, 638, 838, 872, 938, 1081, 1485, 2036 |
| HgaI | GACGC | 3 cut(s) | 172, 368, 610 |
| HhaI | GCGC | 4 cut(s) | 50, 401, 1204, 1737 |
| Hin1I | GRCGYC | 2 cut(s) | 468, 1202 |
| Hin6I | GCGC | 4 cut(s) | 48, 399, 1202, 1735 |
| HinP1I | GCGC | 4 cut(s) | 48, 399, 1202, 1735 |
| HincII | GTYRAC | 2 cut(s) | 1266, 1595 |
| HindII | GTYRAC | 2 cut(s) | 1266, 1595 |
| HindIII | AAGCTT | 1 cut(s) | 19 |
| HpaI | GTTAAC | 1 cut(s) | 1266 |
| HphI | GGTGA | 6 cut(s) | 88, 466, 958, 1120, 1203, 2000 |
| Hpy166II | GTNNAC | 8 cut(s) | 79, 295, 472, 556, 1266, 1322, 1595, 2090 |
| Hpy8I | GTNNAC | 8 cut(s) | 79, 295, 472, 556, 1266, 1322, 1595, 2090 |
| Hpy99I | CGWCG | 7 cut(s) | 137, 188, 224, 362, 575, 626, 667 |
| HpyAV | CCTTC | 5 cut(s) | 261, 336, 796, 1830, 2046 |
| HpyCH4III | ACNGT | 1 cut(s) | 454 |
| HpyCH4IV | ACGT | 5 cut(s) | 132, 468, 548, 1268, 2029 |
| HpyCH4V | TGCA | 8 cut(s) | 448, 967, 1340, 1411, 1643, 1760, 1806, 2099 |
| HpySE526I | ACGT | 5 cut(s) | 132, 468, 548, 1268, 2029 |
| Hsp92I | GRCGYC | 2 cut(s) | 468, 1202 |
| HspAI | GCGC | 4 cut(s) | 48, 399, 1202, 1735 |
| KasI | GGCGCC | 1 cut(s) | 1201 |
| Kpn2I | TCCGGA | 1 cut(s) | 316 |
| KroI | GCCGGC | 3 cut(s) | 50, 519, 575 |
| KroNI | GCCGGC | 3 cut(s) | 52, 521, 577 |
| KspAI | GTTAAC | 1 cut(s) | 1266 |
| Kzo9I | GATC | 5 cut(s) | 25, 456, 1447, 1617, 1945 |
| LmnI | GCTCC | 3 cut(s) | 543, 1352, 1637 |
| Lsp1109I | GCAGC | 4 cut(s) | 844, 1317, 1616, 1624 |
| LweI | GCATC | 3 cut(s) | 984, 1630, 2108 |
| MaeI | CTAG | 3 cut(s) | 1020, 1458, 1748 |
| MaeII | ACGT | 5 cut(s) | 132, 468, 548, 1268, 2029 |
| MaeIII | GTNAC | 2 cut(s) | 1108, 1131 |
| MalI | GATC | 5 cut(s) | 27, 458, 1449, 1619, 1947 |
| MboI | GATC | 5 cut(s) | 25, 456, 1447, 1617, 1945 |
| MboII | GAAGA | 9 cut(s) | 82, 220, 321, 574, 758, 840, 1008, 1234, 1579 |
| MflI | RGATCY | 3 cut(s) | 25, 1617, 1945 |
| MhlI | GDGCHC | 3 cut(s) | 120, 548, 977 |
| MlsI | TGGCCA | 1 cut(s) | 1485 |
| MluCI | AATT | 9 cut(s) | 781, 1084, 1180, 1453, 1461, 1602, 1669, 1772, 1991 |
| MluNI | TGGCCA | 1 cut(s) | 1485 |
| Mly113I | GGCGCC | 1 cut(s) | 1202 |
| MlyI | GAGTC | 8 cut(s) | 290, 337, 575, 796, 1007, 1715, 1829, 1834 |
| MmeI | TCCRAC | 4 cut(s) | 381, 645, 1813, 1973 |
| Mox20I | TGGCCA | 1 cut(s) | 1485 |
| MreI | CGCCGGCG | 2 cut(s) | 50, 575 |
| MroI | TCCGGA | 1 cut(s) | 316 |
| MroNI | GCCGGC | 3 cut(s) | 50, 519, 575 |
| MscI | TGGCCA | 1 cut(s) | 1485 |
| MseI | TTAA | 7 cut(s) | 933, 990, 1062, 1265, 1398, 1962, 1995 |
| MslI | CAYNNNNRTG | 1 cut(s) | 551 |
| Msp20I | TGGCCA | 1 cut(s) | 1485 |
| MspA1I | CMGCKG | 1 cut(s) | 1077 |
| MspR9I | CCNGG | 4 cut(s) | 212, 538, 721, 1357 |
| MvaI | CCWGG | 1 cut(s) | 1357 |
| MvnI | CGCG | 1 cut(s) | 183 |
| NaeI | GCCGGC | 3 cut(s) | 52, 521, 577 |
| NarI | GGCGCC | 1 cut(s) | 1202 |
| NciI | CCSGG | 3 cut(s) | 212, 538, 721 |
| NcoI | CCATGG | 1 cut(s) | 1157 |
| NdeII | GATC | 5 cut(s) | 25, 456, 1447, 1617, 1945 |
| NgoMIV | GCCGGC | 3 cut(s) | 50, 519, 575 |
| NlaIV | GGNNCC | 8 cut(s) | 27, 249, 511, 680, 1042, 1203, 1300, 1354 |
| NmeAIII | GCCGAG | 3 cut(s) | 139, 427, 920 |
| NmuCI | GTSAC | 1 cut(s) | 1108 |
| NspI | RCATGY | 1 cut(s) | 1364 |
| OliI | CACNNNNGTG | 1 cut(s) | 551 |
| PaeI | GCATGC | 1 cut(s) | 1364 |
| PceI | AGGCCT | 2 cut(s) | 838, 938 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 465, 474, 576, 710 |
| PdiI | GCCGGC | 3 cut(s) | 52, 521, 577 |
| PfeI | GAWTC | 7 cut(s) | 159, 192, 237, 313, 628, 668, 1684 |
| PflFI | GACNNNGTC | 2 cut(s) | 224, 352 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 540 |
| PinAI | ACCGGT | 1 cut(s) | 1796 |
| PkrI | GCNGC | 9 cut(s) | 56, 182, 374, 859, 871, 955, 1307, 1614, 1631 |
| PleI | GAGTC | 8 cut(s) | 290, 337, 575, 795, 1007, 1715, 1828, 1834 |
| PluTI | GGCGCC | 1 cut(s) | 1205 |
| PpsI | GAGTC | 8 cut(s) | 290, 337, 575, 795, 1007, 1715, 1828, 1834 |
| Psp1406I | AACGTT | 1 cut(s) | 1268 |
| Psp6I | CCWGG | 1 cut(s) | 1355 |
| PspFI | CCCAGC | 1 cut(s) | 1737 |
| PspGI | CCWGG | 1 cut(s) | 1355 |
| PspN4I | GGNNCC | 8 cut(s) | 27, 249, 511, 680, 1042, 1203, 1300, 1354 |
| PspPI | GGNCC | 6 cut(s) | 61, 247, 280, 636, 1299, 2114 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 707, 739 |
| PstI | CTGCAG | 2 cut(s) | 1342, 1413 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1724 |
| PsuI | RGATCY | 3 cut(s) | 25, 1617, 1945 |
| PsyI | GACNNNGTC | 2 cut(s) | 224, 352 |
| RseI | CAYNNNNRTG | 1 cut(s) | 551 |
| SaqAI | TTAA | 7 cut(s) | 933, 990, 1062, 1265, 1398, 1962, 1995 |
| SatI | GCNGC | 9 cut(s) | 55, 181, 373, 858, 870, 954, 1306, 1613, 1630 |
| Sau3AI | GATC | 5 cut(s) | 25, 456, 1447, 1617, 1945 |
| Sau96I | GGNCC | 6 cut(s) | 61, 247, 280, 636, 1299, 2114 |
| SbfI | CCTGCAGG | 1 cut(s) | 1342 |
| SchI | GAGTC | 8 cut(s) | 290, 337, 575, 796, 1007, 1715, 1829, 1834 |
| ScrFI | CCNGG | 4 cut(s) | 212, 538, 721, 1357 |
| SdaI | CCTGCAGG | 1 cut(s) | 1342 |
| SduI | GDGCHC | 3 cut(s) | 120, 548, 977 |
| SfaNI | GCATC | 3 cut(s) | 984, 1630, 2108 |
| SfcI | CTRYAG | 3 cut(s) | 1103, 1338, 1409 |
| SfoI | GGCGCC | 1 cut(s) | 1203 |
| SgrAI | CRCCGGYG | 3 cut(s) | 50, 442, 575 |
| SinI | GGWCC | 5 cut(s) | 61, 247, 280, 1299, 2114 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 551 |
| SmlI | CTYRAG | 2 cut(s) | 102, 1730 |
| SmoI | CTYRAG | 2 cut(s) | 102, 1730 |
| SphI | GCATGC | 1 cut(s) | 1364 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1342 |
| Sse9I | AATT | 9 cut(s) | 781, 1084, 1180, 1453, 1461, 1602, 1669, 1772, 1991 |
| SseBI | AGGCCT | 2 cut(s) | 838, 938 |
| SspDI | GGCGCC | 1 cut(s) | 1201 |
| SspMI | CTAG | 3 cut(s) | 1020, 1458, 1748 |
| StuI | AGGCCT | 2 cut(s) | 838, 938 |
| StyD4I | CCNGG | 4 cut(s) | 210, 536, 719, 1355 |
| StyI | CCWWGG | 4 cut(s) | 283, 462, 1091, 1157 |
| TaaI | ACNGT | 1 cut(s) | 454 |
| TaiI | ACGT | 5 cut(s) | 135, 471, 551, 1271, 2032 |
| TaqI | TCGA | 4 cut(s) | 135, 584, 785, 1446 |
| TasI | AATT | 9 cut(s) | 781, 1084, 1180, 1453, 1461, 1602, 1669, 1772, 1991 |
| TauI | GCSGC | 5 cut(s) | 57, 183, 375, 872, 956 |
| TfiI | GAWTC | 7 cut(s) | 159, 192, 237, 313, 628, 668, 1684 |
| Tru1I | TTAA | 7 cut(s) | 933, 990, 1062, 1265, 1398, 1962, 1995 |
| Tru9I | TTAA | 7 cut(s) | 933, 990, 1062, 1265, 1398, 1962, 1995 |
| TscAI | CASTG | 2 cut(s) | 974, 1642 |
| TseFI | GTSAC | 1 cut(s) | 1108 |
| TseI | GCWGC | 4 cut(s) | 857, 1305, 1612, 1629 |
| Tsp45I | GTSAC | 1 cut(s) | 1108 |
| TspDTI | ATGAA | 6 cut(s) | 17, 759, 1024, 1804, 1992, 2055 |
| TspGWI | ACGGA | 3 cut(s) | 142, 373, 1234 |
| TspRI | CASTG | 2 cut(s) | 974, 1642 |
| Tth111I | GACNNNGTC | 2 cut(s) | 224, 352 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 540 |
| VpaK11BI | GGWCC | 5 cut(s) | 61, 247, 280, 1299, 2114 |
| XapI | RAATTY | 6 cut(s) | 781, 1180, 1453, 1461, 1772, 1991 |
| XbaI | TCTAGA | 1 cut(s) | 1457 |
| XceI | RCATGY | 1 cut(s) | 1364 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 241, 689, 1195 |
| XmiI | GTMKAC | 2 cut(s) | 1321, 2089 |
| XspI | CTAG | 3 cut(s) | 1020, 1458, 1748 |
| ZraI | GACGTC | 1 cut(s) | 469 |