Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G28350 AT2G28350 |
| fragaria_vesca | FvH4_3g32000 FvH4_3g32000 FvH4_6g15960 FvH4_6g15960 FvH4_6g15960 |
| malus_domestica | MD03G1119500.v1.1 MD03G1119700.v1.1 MD04G1096900.v1.1 |
| prunus_persica | Prupe.6G102800_v2.0.a1 Prupe.6G102800_v2.0.a1 Prupe.6G102800_v2.0.a1 Prupe.6G236200_v2.0.a1 Prupe.6G236200_v2.0.a1 Prupe.6G236200_v2.0.a1 |
| pyrus_communis | pycom04g09200 pycom11g11370 pycom12g11700 |
| rosa_chinensis | RchiOBHm_Chr3g0469661 RchiOBHm_Chr5g0058761 |
| rosa_laevigata | RLG00000024330 RLG00000035245 |
| rosa_multiflora | Rmu_sc0000367.1_g000238 Rmu_sc0006483.1_g000023 Rmu_sc0030116.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00021650 Rroxscaffold_6G00411580 |
| rosa_rugosa | Rorug03G0103100 Rorug03G0103200 Rorug03G0103300 Rorug05G0317900 |
| rosa_samantha | Rh3AG152700 Rh3BG176500 Rh3CG167500 Rh3DG199100 Rh5AG383600 Rh5BG395500 Rh5CG419200 Rh5DG410900 |
| rosa_wichuraiana | Rw3G014400 Rw5G036140 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2024 |
| AarI | CACCTGC | 1 cut(s) | 1108 |
| AatII | GACGTC | 1 cut(s) | 141 |
| Acc36I | ACCTGC | 1 cut(s) | 1108 |
| AccII | CGCG | 3 cut(s) | 284, 344, 467 |
| AccIII | TCCGGA | 1 cut(s) | 989 |
| AclWI | GGATC | 6 cut(s) | 20, 33, 160, 173, 1043, 1198 |
| AcoI | YGGCCR | 3 cut(s) | 192, 882, 2034 |
| AcsI | RAATTY | 3 cut(s) | 805, 1192, 1549 |
| AcvI | CACGTG | 1 cut(s) | 67 |
| AcyI | GRCGYC | 3 cut(s) | 138, 335, 366 |
| AfaI | GTAC | 3 cut(s) | 298, 401, 517 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 162, 246, 746, 996 |
| AflIII | ACRYGT | 1 cut(s) | 1896 |
| AgsI | TTSAA | 2 cut(s) | 1653, 1772 |
| AjiI | CACGTC | 2 cut(s) | 1125, 2058 |
| AjnI | CCWGG | 3 cut(s) | 395, 1088, 1373 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1692, 1724 |
| AleI | CACNNNNGTG | 1 cut(s) | 557 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 717, 749 |
| AluBI | AGCT | 8 cut(s) | 21, 34, 128, 1041, 1183, 1438, 1775, 1876 |
| AluI | AGCT | 8 cut(s) | 21, 34, 128, 1041, 1183, 1438, 1775, 1876 |
| Alw21I | GWGCWC | 2 cut(s) | 554, 929 |
| Alw26I | GTCTC | 4 cut(s) | 404, 579, 1010, 1250 |
| AlwI | GGATC | 6 cut(s) | 20, 33, 160, 173, 1043, 1198 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 402, 1958 |
| Aor13HI | TCCGGA | 1 cut(s) | 989 |
| ApaI | GGGCCC | 1 cut(s) | 1320 |
| ApeKI | GCWGC | 5 cut(s) | 708, 892, 1323, 1512, 1630 |
| ApoI | RAATTY | 3 cut(s) | 805, 1192, 1549 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 218, 250 |
| AspLEI | GCGC | 2 cut(s) | 50, 407 |
| AspS9I | GGNCC | 7 cut(s) | 61, 214, 442, 1316, 1317, 1855, 2114 |
| AsuC2I | CCSGG | 1 cut(s) | 218 |
| AsuHPI | GGTGA | 6 cut(s) | 88, 146, 472, 1132, 1206, 1215 |
| AvaII | GGWCC | 4 cut(s) | 61, 214, 442, 2114 |
| BaeGI | GKGCMC | 1 cut(s) | 1320 |
| BamHI | GGATCC | 2 cut(s) | 25, 165 |
| BanII | GRGCYC | 1 cut(s) | 1320 |
| BbrPI | CACGTG | 1 cut(s) | 67 |
| BbsI | GAAGAC | 3 cut(s) | 82, 353, 1577 |
| Bbv12I | GWGCWC | 2 cut(s) | 554, 929 |
| BbvCI | CCTCAGC | 1 cut(s) | 30 |
| BbvI | GCAGC | 5 cut(s) | 720, 904, 1335, 1524, 1642 |
| BccI | CCATC | 7 cut(s) | 178, 206, 302, 653, 684, 1000, 1652 |
| BceAI | ACGGC | 5 cut(s) | 496, 539, 760, 880, 1276 |
| BciT130I | CCWGG | 3 cut(s) | 397, 1090, 1375 |
| BcnI | CCSGG | 1 cut(s) | 218 |
| BcoDI | GTCTC | 4 cut(s) | 404, 579, 1010, 1250 |
| BfaI | CTAG | 6 cut(s) | 1184, 1476, 1554, 1727, 1740, 1790 |
| BfmI | CTRYAG | 4 cut(s) | 184, 1115, 1356, 1427 |
| BfuAI | ACCTGC | 1 cut(s) | 1108 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 526, 1108 |
| BglII | AGATCT | 1 cut(s) | 1405 |
| Bme1390I | CCNGG | 4 cut(s) | 218, 397, 1090, 1375 |
| Bme18I | GGWCC | 4 cut(s) | 61, 214, 442, 2114 |
| BmgBI | CACGTC | 2 cut(s) | 1125, 2058 |
| BmgT120I | GGNCC | 7 cut(s) | 61, 214, 442, 1316, 1317, 1855, 2114 |
| BmiI | GGNNCC | 7 cut(s) | 27, 167, 216, 444, 1318, 1372, 2115 |
| BmrFI | CCNGG | 4 cut(s) | 218, 397, 1090, 1375 |
| BmrI | ACTGGG | 1 cut(s) | 2102 |
| BmsI | GCATC | 1 cut(s) | 1500 |
| BmuI | ACTGGG | 1 cut(s) | 2102 |
| BpiI | GAAGAC | 3 cut(s) | 82, 353, 1577 |
| BpmI | CTGGAG | 3 cut(s) | 603, 744, 1992 |
| Bpu10I | CCTNAGC | 1 cut(s) | 30 |
| BpuMI | CCSGG | 1 cut(s) | 218 |
| BsaAI | YACGTR | 1 cut(s) | 67 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1662 |
| BsaHI | GRCGYC | 3 cut(s) | 138, 335, 366 |
| BsaI | GGTCTC | 1 cut(s) | 404 |
| BsaWI | WCCGGW | 2 cut(s) | 73, 989 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 717, 747 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 162, 246, 746, 996 |
| Bse118I | RCCGGY | 3 cut(s) | 50, 331, 448 |
| Bse1I | ACTGG | 5 cut(s) | 1449, 1594, 1801, 1975, 2097 |
| Bse3DI | GCAATG | 2 cut(s) | 1286, 1522 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1662 |
| BseAI | TCCGGA | 1 cut(s) | 989 |
| BseBI | CCWGG | 3 cut(s) | 397, 1090, 1375 |
| BseGI | GGATG | 4 cut(s) | 255, 695, 1445, 2029 |
| BseJI | GATNNNNATC | 1 cut(s) | 1662 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 162, 246, 746, 996 |
| BseMI | GCAATG | 2 cut(s) | 1286, 1522 |
| BseMII | CTCAG | 7 cut(s) | 44, 96, 593, 843, 1011, 1617, 2111 |
| BseNI | ACTGG | 5 cut(s) | 1449, 1594, 1801, 1975, 2097 |
| BseRI | GAGGAG | 2 cut(s) | 785, 788 |
| BseSI | GKGCMC | 1 cut(s) | 1320 |
| BseXI | GCAGC | 5 cut(s) | 720, 904, 1335, 1524, 1642 |
| BseYI | CCCAGC | 1 cut(s) | 1319 |
| BsgI | GTGCAG | 2 cut(s) | 473, 998 |
| Bsh1236I | CGCG | 3 cut(s) | 284, 344, 467 |
| BsiHKAI | GWGCWC | 2 cut(s) | 554, 929 |
| BsiSI | CCGG | 8 cut(s) | 51, 74, 218, 332, 449, 932, 990, 2033 |
| BslFI | GGGAC | 6 cut(s) | 377, 485, 798, 1066, 1142, 1848 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 162, 246, 746, 996 |
| BsmAI | GTCTC | 4 cut(s) | 404, 579, 1010, 1250 |
| BsmBI | CGTCTC | 1 cut(s) | 1250 |
| BsmFI | GGGAC | 6 cut(s) | 377, 485, 798, 1066, 1142, 1848 |
| BsmI | GAATGC | 1 cut(s) | 2076 |
| Bso31I | GGTCTC | 1 cut(s) | 404 |
| Bsp120I | GGGCCC | 1 cut(s) | 1316 |
| Bsp1286I | GDGCHC | 3 cut(s) | 554, 929, 1320 |
| Bsp13I | TCCGGA | 1 cut(s) | 989 |
| Bsp143I | GATC | 7 cut(s) | 25, 165, 462, 619, 1035, 1203, 1405 |
| Bsp68I | TCGCGA | 2 cut(s) | 344, 467 |
| BspCNI | CTCAG | 7 cut(s) | 43, 95, 594, 844, 1012, 1618, 2112 |
| BspEI | TCCGGA | 1 cut(s) | 989 |
| BspFNI | CGCG | 3 cut(s) | 284, 344, 467 |
| BspLI | GGNNCC | 7 cut(s) | 27, 167, 216, 444, 1318, 1372, 2115 |
| BspMAI | CTGCAG | 4 cut(s) | 188, 1119, 1360, 1431 |
| BspMI | ACCTGC | 1 cut(s) | 1108 |
| BspPI | GGATC | 6 cut(s) | 20, 33, 160, 173, 1043, 1198 |
| BspQI | GCTCTTC | 1 cut(s) | 1866 |
| BspTNI | GGTCTC | 1 cut(s) | 404 |
| BsrDI | GCAATG | 2 cut(s) | 1286, 1522 |
| BsrFI | RCCGGY | 3 cut(s) | 50, 331, 448 |
| BsrI | ACTGG | 5 cut(s) | 1449, 1594, 1801, 1975, 2097 |
| BssAI | RCCGGY | 3 cut(s) | 50, 331, 448 |
| BssMI | GATC | 7 cut(s) | 25, 165, 462, 619, 1035, 1203, 1405 |
| BssNI | GRCGYC | 3 cut(s) | 138, 335, 366 |
| BssT1I | CCWWGG | 3 cut(s) | 422, 816, 1103 |
| Bst2UI | CCWGG | 3 cut(s) | 397, 1090, 1375 |
| Bst4CI | ACNGT | 4 cut(s) | 460, 1057, 1694, 1719 |
| Bst6I | CTCTTC | 2 cut(s) | 1610, 1866 |
| BstACI | GRCGYC | 3 cut(s) | 138, 335, 366 |
| BstBAI | YACGTR | 1 cut(s) | 67 |
| BstDSI | CCRYGG | 3 cut(s) | 282, 521, 1169 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 160 |
| BstF5I | GGATG | 4 cut(s) | 255, 695, 1445, 2029 |
| BstFNI | CGCG | 3 cut(s) | 284, 344, 467 |
| BstHHI | GCGC | 2 cut(s) | 50, 407 |
| BstKTI | GATC | 7 cut(s) | 28, 168, 465, 622, 1038, 1206, 1408 |
| BstMAI | GTCTC | 4 cut(s) | 404, 579, 1010, 1250 |
| BstMBI | GATC | 7 cut(s) | 25, 165, 462, 619, 1035, 1203, 1405 |
| BstNI | CCWGG | 3 cut(s) | 397, 1090, 1375 |
| BstNSI | RCATGY | 3 cut(s) | 122, 1382, 1900 |
| BstSCI | CCNGG | 4 cut(s) | 216, 395, 1088, 1373 |
| BstSFI | CTRYAG | 4 cut(s) | 184, 1115, 1356, 1427 |
| BstSLI | GKGCMC | 1 cut(s) | 1320 |
| BstUI | CGCG | 3 cut(s) | 284, 344, 467 |
| BstV1I | GCAGC | 5 cut(s) | 720, 904, 1335, 1524, 1642 |
| BstV2I | GAAGAC | 3 cut(s) | 82, 353, 1577 |
| BstX2I | RGATCY | 3 cut(s) | 25, 165, 1405 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 131 |
| BstYI | RGATCY | 3 cut(s) | 25, 165, 1405 |
| BtgI | CCRYGG | 3 cut(s) | 282, 521, 1169 |
| BtgZI | GCGATG | 2 cut(s) | 156, 983 |
| BtrI | CACGTC | 2 cut(s) | 1125, 2058 |
| BtsCI | GGATG | 4 cut(s) | 255, 695, 1445, 2029 |
| BtsI | GCAGTG | 3 cut(s) | 963, 986, 1801 |
| BtsIMutI | CAGTG | 4 cut(s) | 963, 986, 1801, 1993 |
| BtuMI | TCGCGA | 2 cut(s) | 344, 467 |
| BveI | ACCTGC | 1 cut(s) | 1108 |
| CaiI | CAGNNNCTG | 2 cut(s) | 402, 1958 |
| CfoI | GCGC | 2 cut(s) | 50, 407 |
| Cfr10I | RCCGGY | 3 cut(s) | 50, 331, 448 |
| Cfr13I | GGNCC | 7 cut(s) | 61, 214, 442, 1316, 1317, 1855, 2114 |
| Cfr42I | CCGCGG | 1 cut(s) | 285 |
| CseI | GACGC | 4 cut(s) | 324, 358, 374, 1232 |
| Csp6I | GTAC | 3 cut(s) | 297, 400, 516 |
| CviQI | GTAC | 3 cut(s) | 297, 400, 516 |
| DpnI | GATC | 7 cut(s) | 27, 167, 464, 621, 1037, 1205, 1407 |
| DpnII | GATC | 7 cut(s) | 25, 165, 462, 619, 1035, 1203, 1405 |
| EaeI | YGGCCR | 3 cut(s) | 192, 882, 2034 |
| Eam1104I | CTCTTC | 2 cut(s) | 1610, 1866 |
| EarI | CTCTTC | 2 cut(s) | 1610, 1866 |
| EciI | GGCGGA | 4 cut(s) | 142, 227, 396, 455 |
| Eco130I | CCWWGG | 3 cut(s) | 422, 816, 1103 |
| Eco147I | AGGCCT | 3 cut(s) | 275, 850, 950 |
| Eco24I | GRGCYC | 1 cut(s) | 1320 |
| Eco31I | GGTCTC | 1 cut(s) | 404 |
| Eco47I | GGWCC | 4 cut(s) | 61, 214, 442, 2114 |
| Eco72I | CACGTG | 1 cut(s) | 67 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 160 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2114 |
| EcoRI | GAATTC | 1 cut(s) | 1549 |
| EcoRII | CCWGG | 3 cut(s) | 395, 1088, 1373 |
| EcoT14I | CCWWGG | 3 cut(s) | 422, 816, 1103 |
| EcoT38I | GRGCYC | 1 cut(s) | 1320 |
| ErhI | CCWWGG | 3 cut(s) | 422, 816, 1103 |
| Esp3I | CGTCTC | 1 cut(s) | 1250 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1670, 1702 |
| FaqI | GGGAC | 6 cut(s) | 377, 485, 798, 1066, 1142, 1848 |
| FauI | CCCGC | 3 cut(s) | 453, 740, 1257 |
| FokI | GGATG | 4 cut(s) | 262, 702, 1432, 2016 |
| FriOI | GRGCYC | 1 cut(s) | 1320 |
| FspBI | CTAG | 6 cut(s) | 1184, 1476, 1554, 1727, 1740, 1790 |
| GlaI | GCGC | 2 cut(s) | 49, 406 |
| GsaI | CCCAGC | 1 cut(s) | 1323 |
| GsuI | CTGGAG | 3 cut(s) | 603, 744, 1992 |
| HapII | CCGG | 8 cut(s) | 51, 74, 218, 332, 449, 932, 990, 2033 |
| HgaI | GACGC | 4 cut(s) | 324, 358, 374, 1232 |
| HhaI | GCGC | 2 cut(s) | 50, 407 |
| Hin1I | GRCGYC | 3 cut(s) | 138, 335, 366 |
| Hin6I | GCGC | 2 cut(s) | 48, 405 |
| HinP1I | GCGC | 2 cut(s) | 48, 405 |
| HincII | GTYRAC | 3 cut(s) | 537, 1284, 1613 |
| HindII | GTYRAC | 3 cut(s) | 537, 1284, 1613 |
| HindIII | AAGCTT | 1 cut(s) | 19 |
| HpaI | GTTAAC | 2 cut(s) | 537, 1284 |
| HpaII | CCGG | 8 cut(s) | 51, 74, 218, 332, 449, 932, 990, 2033 |
| HphI | GGTGA | 6 cut(s) | 88, 146, 472, 1132, 1206, 1215 |
| Hpy99I | CGWCG | 4 cut(s) | 143, 230, 293, 368 |
| HpyAV | CCTTC | 4 cut(s) | 829, 940, 1321, 2046 |
| HpyCH4III | ACNGT | 4 cut(s) | 460, 1057, 1694, 1719 |
| HpyCH4IV | ACGT | 5 cut(s) | 66, 138, 474, 1124, 2057 |
| HpyCH4V | TGCA | 9 cut(s) | 186, 454, 979, 1117, 1358, 1429, 1806, 2006, 2074 |
| HpySE526I | ACGT | 5 cut(s) | 66, 138, 474, 1124, 2057 |
| Hsp92I | GRCGYC | 3 cut(s) | 138, 335, 366 |
| HspAI | GCGC | 2 cut(s) | 48, 405 |
| Kpn2I | TCCGGA | 1 cut(s) | 989 |
| KroI | GCCGGC | 2 cut(s) | 50, 331 |
| KroNI | GCCGGC | 2 cut(s) | 52, 333 |
| KspAI | GTTAAC | 2 cut(s) | 537, 1284 |
| KspI | CCGCGG | 1 cut(s) | 285 |
| Kzo9I | GATC | 7 cut(s) | 25, 165, 462, 619, 1035, 1203, 1405 |
| LguI | GCTCTTC | 1 cut(s) | 1866 |
| LmnI | GCTCC | 4 cut(s) | 549, 1370, 1435, 2096 |
| Lsp1109I | GCAGC | 5 cut(s) | 720, 904, 1335, 1524, 1642 |
| LweI | GCATC | 1 cut(s) | 1500 |
| MaeI | CTAG | 6 cut(s) | 1184, 1476, 1554, 1727, 1740, 1790 |
| MaeII | ACGT | 5 cut(s) | 66, 138, 474, 1124, 2057 |
| MaeIII | GTNAC | 6 cut(s) | 134, 1120, 1143, 1212, 1799, 1948 |
| MalI | GATC | 7 cut(s) | 27, 167, 464, 621, 1037, 1205, 1407 |
| MboI | GATC | 7 cut(s) | 25, 165, 462, 619, 1035, 1203, 1405 |
| MfeI | CAATTG | 1 cut(s) | 258 |
| MflI | RGATCY | 3 cut(s) | 25, 165, 1405 |
| MhlI | GDGCHC | 3 cut(s) | 554, 929, 1320 |
| MluCI | AATT | 9 cut(s) | 243, 258, 572, 677, 805, 1096, 1192, 1385, 1549 |
| MlyI | GAGTC | 6 cut(s) | 17, 581, 820, 1019, 1829, 1834 |
| MmeI | TCCRAC | 4 cut(s) | 294, 387, 408, 1413 |
| MreI | CGCCGGCG | 1 cut(s) | 50 |
| MroI | TCCGGA | 1 cut(s) | 989 |
| MroNI | GCCGGC | 2 cut(s) | 50, 331 |
| MseI | TTAA | 5 cut(s) | 536, 1002, 1283, 1416, 1689 |
| MslI | CAYNNNNRTG | 1 cut(s) | 557 |
| MspA1I | CMGCKG | 5 cut(s) | 34, 284, 711, 1041, 1459 |
| MspI | CCGG | 8 cut(s) | 51, 74, 218, 332, 449, 932, 990, 2033 |
| MspR9I | CCNGG | 4 cut(s) | 218, 397, 1090, 1375 |
| MunI | CAATTG | 1 cut(s) | 258 |
| Mva1269I | GAATGC | 1 cut(s) | 2076 |
| MvaI | CCWGG | 3 cut(s) | 397, 1090, 1375 |
| MvnI | CGCG | 3 cut(s) | 284, 344, 467 |
| NaeI | GCCGGC | 2 cut(s) | 52, 333 |
| NciI | CCSGG | 1 cut(s) | 218 |
| NdeII | GATC | 7 cut(s) | 25, 165, 462, 619, 1035, 1203, 1405 |
| NgoMIV | GCCGGC | 2 cut(s) | 50, 331 |
| NlaIV | GGNNCC | 7 cut(s) | 27, 167, 216, 444, 1318, 1372, 2115 |
| NmeAIII | GCCGAG | 7 cut(s) | 139, 186, 416, 433, 932, 1832, 1967 |
| NmuCI | GTSAC | 4 cut(s) | 134, 1120, 1212, 1799 |
| NruI | TCGCGA | 2 cut(s) | 344, 467 |
| NspI | RCATGY | 3 cut(s) | 122, 1382, 1900 |
| OliI | CACNNNNGTG | 1 cut(s) | 557 |
| PaeI | GCATGC | 2 cut(s) | 122, 1382 |
| PaqCI | CACCTGC | 1 cut(s) | 1108 |
| PceI | AGGCCT | 3 cut(s) | 275, 850, 950 |
| PciI | ACATGT | 1 cut(s) | 1896 |
| PciSI | GCTCTTC | 1 cut(s) | 1866 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 464, 471, 480 |
| PctI | GAATGC | 1 cut(s) | 2076 |
| PdiI | GCCGGC | 2 cut(s) | 52, 333 |
| PfeI | GAWTC | 7 cut(s) | 384, 634, 1084, 1479, 1522, 1700, 2062 |
| PleI | GAGTC | 6 cut(s) | 16, 581, 819, 1019, 1828, 1834 |
| PmaCI | CACGTG | 1 cut(s) | 67 |
| PmlI | CACGTG | 1 cut(s) | 67 |
| PpsI | GAGTC | 6 cut(s) | 16, 581, 819, 1019, 1828, 1834 |
| Ppu21I | YACGTR | 1 cut(s) | 67 |
| PpuMI | RGGWCCY | 1 cut(s) | 2114 |
| PscI | ACATGT | 1 cut(s) | 1896 |
| PsiI | TTATAA | 1 cut(s) | 2024 |
| Psp5II | RGGWCCY | 1 cut(s) | 2114 |
| Psp6I | CCWGG | 3 cut(s) | 395, 1088, 1373 |
| PspCI | CACGTG | 1 cut(s) | 67 |
| PspFI | CCCAGC | 1 cut(s) | 1319 |
| PspGI | CCWGG | 3 cut(s) | 395, 1088, 1373 |
| PspN4I | GGNNCC | 7 cut(s) | 27, 167, 216, 444, 1318, 1372, 2115 |
| PspOMI | GGGCCC | 1 cut(s) | 1316 |
| PspPI | GGNCC | 7 cut(s) | 61, 214, 442, 1316, 1317, 1855, 2114 |
| PspPPI | RGGWCCY | 1 cut(s) | 2114 |
| PstI | CTGCAG | 4 cut(s) | 188, 1119, 1360, 1431 |
| PstNI | CAGNNNCTG | 2 cut(s) | 402, 1958 |
| PsuI | RGATCY | 3 cut(s) | 25, 165, 1405 |
| PvuII | CAGCTG | 2 cut(s) | 34, 1041 |
| RruI | TCGCGA | 2 cut(s) | 344, 467 |
| RsaI | GTAC | 3 cut(s) | 298, 401, 517 |
| RsaNI | GTAC | 3 cut(s) | 297, 400, 516 |
| RseI | CAYNNNNRTG | 1 cut(s) | 557 |
| SacII | CCGCGG | 1 cut(s) | 285 |
| SapI | GCTCTTC | 1 cut(s) | 1866 |
| SaqAI | TTAA | 5 cut(s) | 536, 1002, 1283, 1416, 1689 |
| Sau3AI | GATC | 7 cut(s) | 25, 165, 462, 619, 1035, 1203, 1405 |
| Sau96I | GGNCC | 7 cut(s) | 61, 214, 442, 1316, 1317, 1855, 2114 |
| SbfI | CCTGCAGG | 1 cut(s) | 1360 |
| SchI | GAGTC | 6 cut(s) | 17, 581, 820, 1019, 1829, 1834 |
| ScrFI | CCNGG | 4 cut(s) | 218, 397, 1090, 1375 |
| SdaI | CCTGCAGG | 1 cut(s) | 1360 |
| SduI | GDGCHC | 3 cut(s) | 554, 929, 1320 |
| SfaNI | GCATC | 1 cut(s) | 1500 |
| SfcI | CTRYAG | 4 cut(s) | 184, 1115, 1356, 1427 |
| Sfr303I | CCGCGG | 1 cut(s) | 285 |
| SgrAI | CRCCGGYG | 2 cut(s) | 50, 448 |
| SgrBI | CCGCGG | 1 cut(s) | 285 |
| SinI | GGWCC | 4 cut(s) | 61, 214, 442, 2114 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 557 |
| SphI | GCATGC | 2 cut(s) | 122, 1382 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1360 |
| Sse9I | AATT | 9 cut(s) | 243, 258, 572, 677, 805, 1096, 1192, 1385, 1549 |
| SseBI | AGGCCT | 3 cut(s) | 275, 850, 950 |
| SspMI | CTAG | 6 cut(s) | 1184, 1476, 1554, 1727, 1740, 1790 |
| StuI | AGGCCT | 3 cut(s) | 275, 850, 950 |
| StyD4I | CCNGG | 4 cut(s) | 216, 395, 1088, 1373 |
| StyI | CCWWGG | 3 cut(s) | 422, 816, 1103 |
| TaaI | ACNGT | 4 cut(s) | 460, 1057, 1694, 1719 |
| TaiI | ACGT | 5 cut(s) | 69, 141, 477, 1127, 2060 |
| TaqI | TCGA | 5 cut(s) | 141, 590, 1014, 1031, 2065 |
| TaqII | GACCGA | 1 cut(s) | 1598 |
| TasI | AATT | 9 cut(s) | 243, 258, 572, 677, 805, 1096, 1192, 1385, 1549 |
| TfiI | GAWTC | 7 cut(s) | 384, 634, 1084, 1479, 1522, 1700, 2062 |
| Tru1I | TTAA | 5 cut(s) | 536, 1002, 1283, 1416, 1689 |
| Tru9I | TTAA | 5 cut(s) | 536, 1002, 1283, 1416, 1689 |
| TscAI | CASTG | 4 cut(s) | 963, 986, 1808, 1993 |
| TseFI | GTSAC | 4 cut(s) | 134, 1120, 1212, 1799 |
| TseI | GCWGC | 5 cut(s) | 708, 892, 1323, 1512, 1630 |
| Tsp45I | GTSAC | 4 cut(s) | 134, 1120, 1212, 1799 |
| TspDTI | ATGAA | 9 cut(s) | 17, 196, 266, 690, 1036, 1434, 1804, 1884, 2012 |
| TspGWI | ACGGA | 2 cut(s) | 314, 1852 |
| TspRI | CASTG | 4 cut(s) | 963, 986, 1808, 1993 |
| VpaK11BI | GGWCC | 4 cut(s) | 61, 214, 442, 2114 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 160 |
| XapI | RAATTY | 3 cut(s) | 805, 1192, 1549 |
| XbaI | TCTAGA | 1 cut(s) | 1475 |
| XceI | RCATGY | 3 cut(s) | 122, 1382, 1900 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 205 |
| XspI | CTAG | 6 cut(s) | 1184, 1476, 1554, 1727, 1740, 1790 |
| ZraI | GACGTC | 1 cut(s) | 139 |