Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002309

Physical Location & Seq

Genomic Coordinates Forward (+)

57470047 .. 57474995

Gene Structure 4949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG419200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2040 bp

ATGAAGGACATGGAGAAAAGCTTGGATCCTCAGCTATGGCACGCCTGCGCCGGCGGCATGGTCCAAATGCCTCCGGTGAACTCCAAAGTCTTCTACTTTCCTCAAGGACACGCCGAGCACGCCCAAACCCACGTCGATTTCCCCGCCTCCTCCGTCAGAATCCCACCTCTCATTCTCTGCCGCGTCGCCGGAATCAGATACATGGCCGACCCGGAAACCGACGAGGTCTTCGCCAGAATCCGGCTGGTCCCTTCCGAGAGCAACGAGGTTTTTGCTCAGGACCAAGGCTCTGTGGACTCTGATGGGTCTGGGAATCCGGAAAAGCCTTCTTCTTTCGCTAAGACTCTGACCCAGTCCGACGCTAACAATGGCGGCGGGTTCTCCGTTCCGAGATACTGCGCCGAGACCATTTTCCCGAGGCTGGACTACTCCGCCGACCCGCCGGTGCAGACGGTGATCGCCAAGGACGTCCACGGCGAGTTGTGGAAGTTCCGGCACATTTACCGAGGCACCCCTCGCCGGCATTTGCTGACCACCGGGTGGAGCACGTTCGTGAACCAGAAGAAGCTCGTCGCCGGCGACTCGATTGTGTTCCTGCGAGCCGAAAACGGCGACCTCTGCGTCGGGATTCGGAGGGCCAAGCGGGGGTCGCCGGAGGGTTCGTCGGAATCGGGGTGGAACCACGGCGGTTCTGGGGGAGGGTCGGTTTTGCCGTATTCCGGGTTCTCGGTGTTTCTGAAAGATGAAGAGAGCAAAATGGGGAGAAATAATGGGTTTGGGAATTCGAGTCTGAATAATGGGAAGGAGAGAGGGGGCAGAGGAGGAGGAAGAGTGAGGCCTGAGGCTGTGGTGGAGGCTGCCACTCTTGCGGCCAATGGACAGCCGTTTGAGGTGGTTTATTATCCGAGAGCCAGCACGCCGGAGTTTTGTGTTAAGGCCTCGGCGGTGAGGGCGGCGATGAGGGTGCAGTGGTGCTCAGGCATGAGGTTTAAGATGCCTTTTGAGACTGAGGACTCTTCTAGGATTAGTTGGTTCATGGGAACCATAGCTTCTGTTGATGTTAATGATAAAATCCGCTGGCCTAATTCTCCTTGGAGAGTTCTACAGGTGACATGGGATGAGCCAGATTTGTTACAGAATGTGAAGTGTGTCAGCCCATGGTTGATTGAGCTGGTATCAAATTTTCCCATTATCCACATGGCGCCCTTTTCACCGCCACGGAAGAAGTTGCGTATCCCGCAACACCCAGACTTTGACGGGCAGTTAACGTTGCCATCATTTTCAGGCAACCCCCTCGGGTCCAGCAGCCCCATGTGTTGTCTACCAGATAACACTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAACTTAGAATATCTTTATCAAATCTCCACTTTAACAGCAAACTGCAGTCGGGGCTGTTCTCGTCCAGTTTCCAGAGGTTCGATCAAAATTCTAGAATTCCCAATGACATCAGGAATGGCCACACAAACAGCAACGAAAGCCTATCTTGCTTGCTAACAATGGGAAGTTCTAATCAGAACTTGGAGAAATCTGATGATGTGAAGAAACACCAGTTTTTACTCTTTGGTCAACCAATAATTACTGAGCAGCAGATCTCTCGTAGCTGCTCCAGTGATGCAGTTTCACAAGTTCTTGCTGGTAATAATTTGAAAGATGAGAATCAAGGCAGAAAAAGGTTTCTATCTGTTGGTTCAGACTCTGCTCTTGAGCGCTGGGCTTCACTAGAGAAATCTGCATTGAACGAGGAATTTCAAGCTATTGATGTGGATACCGGTCATTGCAAGGTATTCATGGAGTCCGAGGATGTTGGAAGGACTCTTGACCTCTCAGCTTTAGGCTCTTATGATGAGTTATACAGGAGGCTGACCATCATGTTTGGATTAGAAAAACCGGAAATGCTGAGCCATGTTCTTTACCGAGATCCAACAGGTGTTGTTAAACAAACTGGAGATGAACCATTCGGGTATAGTTTTTTGTGTTTTATCTTCCTTTTCAGGCGAATTTGGTTTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

679

Amino Acids

75.39

Weight (kDa)

6.99

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	112 - 213	6.5e-23	B3 DNA binding domain
BRWD_AD	PF25313	290 - 392	1.1e-08	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	309 - 392	3e-33	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28350 AT2G28350
fragaria_vesca	FvH4_3g32000 FvH4_3g32000 FvH4_6g15960 FvH4_6g15960 FvH4_6g15960
malus_domestica	MD03G1119500.v1.1 MD03G1119700.v1.1 MD04G1096900.v1.1
prunus_persica	Prupe.6G102800_v2.0.a1 Prupe.6G102800_v2.0.a1 Prupe.6G102800_v2.0.a1 Prupe.6G236200_v2.0.a1 Prupe.6G236200_v2.0.a1 Prupe.6G236200_v2.0.a1
pyrus_communis	pycom04g09200 pycom11g11370 pycom12g11700
rosa_chinensis	RchiOBHm_Chr3g0469661 RchiOBHm_Chr5g0058761
rosa_laevigata	RLG00000024330 RLG00000035245
rosa_multiflora	Rmu_sc0000367.1_g000238 Rmu_sc0006483.1_g000023 Rmu_sc0030116.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021650 Rroxscaffold_6G00411580
rosa_rugosa	Rorug03G0103100 Rorug03G0103200 Rorug03G0103300 Rorug05G0317900
rosa_samantha	Rh3AG152700 Rh3BG176500 Rh3CG167500 Rh3DG199100 Rh5AG383600 Rh5BG395500 Rh5CG419200 Rh5DG410900
rosa_wichuraiana	Rw3G014400 Rw5G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	620
AatII	GACGTC	1 cut(s)	471
AccB1I	GGYRCC	2 cut(s)	509, 1201
AccB7I	CCANNNNNTGG	1 cut(s)	540
AccI	GTMKAC	1 cut(s)	1321
AccII	CGCG	1 cut(s)	183
AccIII	TCCGGA	1 cut(s)	316
AclI	AACGTT	1 cut(s)	1268
AclWI	GGATC	3 cut(s)	20, 33, 1940
AcoI	YGGCCR	3 cut(s)	204, 870, 1483
AcsI	RAATTY	6 cut(s)	781, 1180, 1453, 1461, 1772, 2025
AcyI	GRCGYC	2 cut(s)	468, 1202
AdeI	CACNNNGTG	1 cut(s)	540
AfeI	AGCGCT	1 cut(s)	1736
AfiI	CCNNNNNNNGG	6 cut(s)	240, 421, 519, 540, 645, 719
AgeI	ACCGGT	1 cut(s)	1796
AgsI	TTSAA	3 cut(s)	1675, 1765, 1778
AjiI	CACGTC	1 cut(s)	133
AjnI	CCWGG	1 cut(s)	1355
AleI	CACNNNNGTG	1 cut(s)	551
AluBI	AGCT	8 cut(s)	21, 34, 568, 1049, 1171, 1629, 1781, 1856
AluI	AGCT	8 cut(s)	21, 34, 568, 1049, 1171, 1629, 1781, 1856
Alw21I	GWGCWC	3 cut(s)	120, 548, 977
Alw26I	GTCTC	2 cut(s)	398, 998
AlwI	GGATC	3 cut(s)	20, 33, 1940
AlwNI	CAGNNNCTG	1 cut(s)	1724
Ama87I	CYCGRG	2 cut(s)	415, 1295
Aor13HI	TCCGGA	1 cut(s)	316
Aor51HI	AGCGCT	1 cut(s)	1736
AoxI	GGCC	7 cut(s)	204, 636, 836, 870, 936, 1079, 1483
ApeKI	GCWGC	4 cut(s)	857, 1305, 1612, 1629
ApoI	RAATTY	6 cut(s)	781, 1180, 1453, 1461, 1772, 2025
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
AsiGI	ACCGGT	1 cut(s)	1796
AspLEI	GCGC	4 cut(s)	50, 401, 1204, 1737
AspS9I	GGNCC	5 cut(s)	61, 247, 280, 636, 1299
AsuC2I	CCSGG	3 cut(s)	212, 538, 721
AsuHPI	GGTGA	5 cut(s)	88, 466, 958, 1120, 1203
AvaI	CYCGRG	2 cut(s)	415, 1295
AvaII	GGWCC	4 cut(s)	61, 247, 280, 1299
AxyI	CCTNAGG	1 cut(s)	840
BalI	TGGCCA	1 cut(s)	1485
BamHI	GGATCC	1 cut(s)	25
BanI	GGYRCC	2 cut(s)	509, 1201
BbsI	GAAGAC	2 cut(s)	82, 220
Bbv12I	GWGCWC	3 cut(s)	120, 548, 977
BbvCI	CCTCAGC	1 cut(s)	30
BbvI	GCAGC	4 cut(s)	844, 1317, 1616, 1624
BccI	CCATC	3 cut(s)	296, 1282, 1901
BceAI	ACGGC	5 cut(s)	490, 625, 697, 700, 868
BcgI	CGANNNNNNTGC	8 cut(s)	254, 288, 946, 980, 1276, 1310, 1604, 1638
BciT130I	CCWGG	1 cut(s)	1357
BciVI	GTATCC	2 cut(s)	1244, 1786
BcnI	CCSGG	3 cut(s)	212, 538, 721
BcoDI	GTCTC	2 cut(s)	398, 998
BfaI	CTAG	3 cut(s)	1020, 1458, 1748
BfmI	CTRYAG	3 cut(s)	1103, 1338, 1409
BfoI	RGCGCY	2 cut(s)	1205, 1738
BfuI	GTATCC	2 cut(s)	1244, 1786
BglII	AGATCT	1 cut(s)	1617
BisI	GCNGC	9 cut(s)	55, 181, 373, 858, 870, 954, 1306, 1613, 1630
BlpI	GCTNAGC	1 cut(s)	1925
BlsI	GCNGC	9 cut(s)	56, 182, 374, 859, 871, 955, 1307, 1614, 1631
Bme1390I	CCNGG	4 cut(s)	212, 538, 721, 1357
Bme18I	GGWCC	4 cut(s)	61, 247, 280, 1299
BmeT110I	CYCGRG	2 cut(s)	415, 1295
BmgBI	CACGTC	1 cut(s)	133
BmgT120I	GGNCC	5 cut(s)	61, 247, 280, 636, 1299
BmiI	GGNNCC	8 cut(s)	27, 249, 511, 680, 1042, 1203, 1300, 1354
BmrFI	CCNGG	4 cut(s)	212, 538, 721, 1357
BmrI	ACTGGG	1 cut(s)	346
BmsI	GCATC	2 cut(s)	984, 1630
BmuI	ACTGGG	1 cut(s)	346
BpiI	GAAGAC	2 cut(s)	82, 220
BpmI	CTGGAG	2 cut(s)	1618, 1992
Bpu10I	CCTNAGC	3 cut(s)	30, 276, 976
Bpu1102I	GCTNAGC	1 cut(s)	1925
BpuEI	CTTGAG	2 cut(s)	87, 1751
BpuMI	CCSGG	3 cut(s)	212, 538, 721
BsaBI	GATNNNNATC	1 cut(s)	1683
BsaHI	GRCGYC	2 cut(s)	468, 1202
BsaI	GGTCTC	1 cut(s)	398
BsaWI	WCCGGW	4 cut(s)	73, 316, 1796, 1915
BsaXI	ACNNNNNCTCC	6 cut(s)	647, 677, 690, 720, 816, 846
Bsc4I	CCNNNNNNNGG	6 cut(s)	240, 421, 519, 540, 645, 719
Bse118I	RCCGGY	5 cut(s)	50, 442, 519, 575, 1796
Bse1I	ACTGG	5 cut(s)	352, 1431, 1576, 1635, 1975
Bse21I	CCTNAGG	1 cut(s)	840
Bse3DI	GCAATG	1 cut(s)	1801
Bse8I	GATNNNNATC	1 cut(s)	1683
BseAI	TCCGGA	1 cut(s)	316
BseBI	CCWGG	1 cut(s)	1357
BseGI	GGATG	2 cut(s)	1123, 1834
BseJI	GATNNNNATC	1 cut(s)	1683
BseLI	CCNNNNNNNGG	6 cut(s)	240, 421, 519, 540, 645, 719
BseMI	GCAATG	1 cut(s)	1801
BseMII	CTCAG	8 cut(s)	44, 290, 831, 990, 999, 1599, 1866, 1916
BseNI	ACTGG	5 cut(s)	352, 1431, 1576, 1635, 1975
BseRI	GAGGAG	3 cut(s)	139, 834, 837
BseXI	GCAGC	4 cut(s)	844, 1317, 1616, 1624
BseYI	CCCAGC	1 cut(s)	1737
BsgI	GTGCAG	2 cut(s)	467, 986
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	7 cut(s)	206, 638, 838, 872, 938, 1081, 1485
BshNI	GGYRCC	2 cut(s)	509, 1201
BshTI	ACCGGT	1 cut(s)	1796
BsiHKAI	GWGCWC	3 cut(s)	120, 548, 977
BsiHKCI	CYCGRG	2 cut(s)	415, 1295
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	6 cut(s)	240, 421, 519, 540, 645, 719
BsmAI	GTCTC	2 cut(s)	398, 998
BsmFI	GGGAC	1 cut(s)	233
BsnI	GGCC	7 cut(s)	206, 638, 838, 872, 938, 1081, 1485
Bso31I	GGTCTC	1 cut(s)	398
BsoBI	CYCGRG	2 cut(s)	415, 1295
Bsp1286I	GDGCHC	3 cut(s)	120, 548, 977
Bsp13I	TCCGGA	1 cut(s)	316
Bsp143I	GATC	5 cut(s)	25, 456, 1447, 1617, 1945
Bsp1720I	GCTNAGC	1 cut(s)	1925
Bsp19I	CCATGG	1 cut(s)	1157
BspANI	GGCC	7 cut(s)	206, 638, 838, 872, 938, 1081, 1485
BspCNI	CTCAG	8 cut(s)	43, 289, 832, 989, 1000, 1600, 1865, 1917
BspEI	TCCGGA	1 cut(s)	316
BspFNI	CGCG	1 cut(s)	183
BspLI	GGNNCC	8 cut(s)	27, 249, 511, 680, 1042, 1203, 1300, 1354
BspMAI	CTGCAG	2 cut(s)	1342, 1413
BspPI	GGATC	3 cut(s)	20, 33, 1940
BspT107I	GGYRCC	2 cut(s)	509, 1201
BspTNI	GGTCTC	1 cut(s)	398
BsrDI	GCAATG	1 cut(s)	1801
BsrFI	RCCGGY	5 cut(s)	50, 442, 519, 575, 1796
BsrI	ACTGG	5 cut(s)	352, 1431, 1576, 1635, 1975
BssAI	RCCGGY	5 cut(s)	50, 442, 519, 575, 1796
BssMI	GATC	5 cut(s)	25, 456, 1447, 1617, 1945
BssNI	GRCGYC	2 cut(s)	468, 1202
BssT1I	CCWWGG	4 cut(s)	283, 462, 1091, 1157
Bst2UI	CCWGG	1 cut(s)	1357
Bst4CI	ACNGT	1 cut(s)	454
Bst6I	CTCTTC	3 cut(s)	741, 823, 1021
BstACI	GRCGYC	2 cut(s)	468, 1202
BstDSI	CCRYGG	4 cut(s)	472, 682, 1157, 1217
BstF5I	GGATG	2 cut(s)	1123, 1834
BstFNI	CGCG	1 cut(s)	183
BstH2I	RGCGCY	2 cut(s)	1205, 1738
BstHHI	GCGC	4 cut(s)	50, 401, 1204, 1737
BstKTI	GATC	5 cut(s)	28, 459, 1450, 1620, 1948
BstMAI	GTCTC	2 cut(s)	398, 998
BstMBI	GATC	5 cut(s)	25, 456, 1447, 1617, 1945
BstNI	CCWGG	1 cut(s)	1357
BstNSI	RCATGY	1 cut(s)	1364
BstSCI	CCNGG	4 cut(s)	210, 536, 719, 1355
BstSFI	CTRYAG	3 cut(s)	1103, 1338, 1409
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	4 cut(s)	844, 1317, 1616, 1624
BstV2I	GAAGAC	2 cut(s)	82, 220
BstX2I	RGATCY	3 cut(s)	25, 1617, 1945
BstYI	RGATCY	3 cut(s)	25, 1617, 1945
Bsu36I	CCTNAGG	1 cut(s)	840
BsuI	GTATCC	2 cut(s)	1244, 1786
BsuRI	GGCC	7 cut(s)	206, 638, 838, 872, 938, 1081, 1485
BtgI	CCRYGG	4 cut(s)	472, 682, 1157, 1217
BtgZI	GCGATG	1 cut(s)	971
BtrI	CACGTC	1 cut(s)	133
BtsCI	GGATG	2 cut(s)	1123, 1834
BtsI	GCAGTG	1 cut(s)	974
BtsIMutI	CAGTG	2 cut(s)	974, 1642
CaiI	CAGNNNCTG	1 cut(s)	1724
CfoI	GCGC	4 cut(s)	50, 401, 1204, 1737
Cfr10I	RCCGGY	5 cut(s)	50, 442, 519, 575, 1796
Cfr13I	GGNCC	5 cut(s)	61, 247, 280, 636, 1299
CseI	GACGC	3 cut(s)	172, 368, 610
CspAI	ACCGGT	1 cut(s)	1796
DinI	GGCGCC	1 cut(s)	1203
DpnI	GATC	5 cut(s)	27, 458, 1449, 1619, 1947
DpnII	GATC	5 cut(s)	25, 456, 1447, 1617, 1945
DraIII	CACNNNGTG	1 cut(s)	540
DrdI	GACNNNNNNGTC	1 cut(s)	620
DseDI	GACNNNNNNGTC	1 cut(s)	620
EaeI	YGGCCR	3 cut(s)	204, 870, 1483
Eam1104I	CTCTTC	3 cut(s)	741, 823, 1021
EarI	CTCTTC	3 cut(s)	741, 823, 1021
EciI	GGCGGA	1 cut(s)	421
Eco130I	CCWWGG	4 cut(s)	283, 462, 1091, 1157
Eco147I	AGGCCT	2 cut(s)	838, 938
Eco31I	GGTCTC	1 cut(s)	398
Eco47I	GGWCC	4 cut(s)	61, 247, 280, 1299
Eco47III	AGCGCT	1 cut(s)	1736
Eco81I	CCTNAGG	1 cut(s)	840
Eco88I	CYCGRG	2 cut(s)	415, 1295
EcoRI	GAATTC	2 cut(s)	781, 1461
EcoRII	CCWGG	1 cut(s)	1355
EcoT14I	CCWWGG	4 cut(s)	283, 462, 1091, 1157
EgeI	GGCGCC	1 cut(s)	1203
EheI	GGCGCC	1 cut(s)	1203
ErhI	CCWWGG	4 cut(s)	283, 462, 1091, 1157
FalI	AAGNNNNNCTT	2 cut(s)	1495, 1527
FaqI	GGGAC	1 cut(s)	233
FauI	CCCGC	5 cut(s)	151, 368, 447, 636, 1245
FblI	GTMKAC	1 cut(s)	1321
Fnu4HI	GCNGC	9 cut(s)	55, 181, 373, 858, 870, 954, 1306, 1613, 1630
FokI	GGATG	2 cut(s)	1130, 1841
Fsp4HI	GCNGC	9 cut(s)	55, 181, 373, 858, 870, 954, 1306, 1613, 1630
FspBI	CTAG	3 cut(s)	1020, 1458, 1748
GlaI	GCGC	4 cut(s)	49, 400, 1203, 1736
GluI	GCNGC	9 cut(s)	55, 181, 373, 858, 870, 954, 1306, 1613, 1630
GsaI	CCCAGC	1 cut(s)	1741
GsuI	CTGGAG	2 cut(s)	1618, 1992
HaeII	RGCGCY	2 cut(s)	1205, 1738
HaeIII	GGCC	7 cut(s)	206, 638, 838, 872, 938, 1081, 1485
HgaI	GACGC	3 cut(s)	172, 368, 610
HhaI	GCGC	4 cut(s)	50, 401, 1204, 1737
Hin1I	GRCGYC	2 cut(s)	468, 1202
Hin6I	GCGC	4 cut(s)	48, 399, 1202, 1735
HinP1I	GCGC	4 cut(s)	48, 399, 1202, 1735
HincII	GTYRAC	2 cut(s)	1266, 1595
HindII	GTYRAC	2 cut(s)	1266, 1595
HindIII	AAGCTT	1 cut(s)	19
HpaI	GTTAAC	1 cut(s)	1266
HphI	GGTGA	5 cut(s)	88, 466, 958, 1120, 1203
Hpy166II	GTNNAC	7 cut(s)	79, 295, 472, 556, 1266, 1322, 1595
Hpy8I	GTNNAC	7 cut(s)	79, 295, 472, 556, 1266, 1322, 1595
Hpy99I	CGWCG	7 cut(s)	137, 188, 224, 362, 575, 626, 667
HpyAV	CCTTC	4 cut(s)	261, 336, 796, 1830
HpyCH4III	ACNGT	1 cut(s)	454
HpyCH4IV	ACGT	4 cut(s)	132, 468, 548, 1268
HpyCH4V	TGCA	7 cut(s)	448, 967, 1340, 1411, 1643, 1760, 1806
HpySE526I	ACGT	4 cut(s)	132, 468, 548, 1268
Hsp92I	GRCGYC	2 cut(s)	468, 1202
HspAI	GCGC	4 cut(s)	48, 399, 1202, 1735
KasI	GGCGCC	1 cut(s)	1201
Kpn2I	TCCGGA	1 cut(s)	316
KroI	GCCGGC	3 cut(s)	50, 519, 575
KroNI	GCCGGC	3 cut(s)	52, 521, 577
KspAI	GTTAAC	1 cut(s)	1266
Kzo9I	GATC	5 cut(s)	25, 456, 1447, 1617, 1945
LmnI	GCTCC	3 cut(s)	543, 1352, 1637
Lsp1109I	GCAGC	4 cut(s)	844, 1317, 1616, 1624
LweI	GCATC	2 cut(s)	984, 1630
MaeI	CTAG	3 cut(s)	1020, 1458, 1748
MaeII	ACGT	4 cut(s)	132, 468, 548, 1268
MaeIII	GTNAC	2 cut(s)	1108, 1131
MalI	GATC	5 cut(s)	27, 458, 1449, 1619, 1947
MboI	GATC	5 cut(s)	25, 456, 1447, 1617, 1945
MflI	RGATCY	3 cut(s)	25, 1617, 1945
MhlI	GDGCHC	3 cut(s)	120, 548, 977
MlsI	TGGCCA	1 cut(s)	1485
MluCI	AATT	9 cut(s)	781, 1084, 1180, 1453, 1461, 1602, 1669, 1772, 2025
MluNI	TGGCCA	1 cut(s)	1485
Mly113I	GGCGCC	1 cut(s)	1202
MlyI	GAGTC	8 cut(s)	290, 337, 575, 796, 1007, 1715, 1829, 1834
MmeI	TCCRAC	4 cut(s)	381, 645, 1813, 1973
Mox20I	TGGCCA	1 cut(s)	1485
MreI	CGCCGGCG	2 cut(s)	50, 575
MroI	TCCGGA	1 cut(s)	316
MroNI	GCCGGC	3 cut(s)	50, 519, 575
MscI	TGGCCA	1 cut(s)	1485
MseI	TTAA	6 cut(s)	933, 990, 1062, 1265, 1398, 1962
MslI	CAYNNNNRTG	1 cut(s)	551
Msp20I	TGGCCA	1 cut(s)	1485
MspA1I	CMGCKG	1 cut(s)	1077
MspR9I	CCNGG	4 cut(s)	212, 538, 721, 1357
MvaI	CCWGG	1 cut(s)	1357
MvnI	CGCG	1 cut(s)	183
NaeI	GCCGGC	3 cut(s)	52, 521, 577
NarI	GGCGCC	1 cut(s)	1202
NciI	CCSGG	3 cut(s)	212, 538, 721
NcoI	CCATGG	1 cut(s)	1157
NdeII	GATC	5 cut(s)	25, 456, 1447, 1617, 1945
NgoMIV	GCCGGC	3 cut(s)	50, 519, 575
NlaIV	GGNNCC	8 cut(s)	27, 249, 511, 680, 1042, 1203, 1300, 1354
NmeAIII	GCCGAG	3 cut(s)	139, 427, 920
NmuCI	GTSAC	1 cut(s)	1108
NspI	RCATGY	1 cut(s)	1364
OliI	CACNNNNGTG	1 cut(s)	551
PaeI	GCATGC	1 cut(s)	1364
PceI	AGGCCT	2 cut(s)	838, 938
PcsI	WCGNNNNNNNCGW	4 cut(s)	465, 474, 576, 710
PdiI	GCCGGC	3 cut(s)	52, 521, 577
PfeI	GAWTC	7 cut(s)	159, 192, 237, 313, 628, 668, 1684
PflFI	GACNNNGTC	2 cut(s)	224, 352
PflMI	CCANNNNNTGG	1 cut(s)	540
PinAI	ACCGGT	1 cut(s)	1796
PkrI	GCNGC	9 cut(s)	56, 182, 374, 859, 871, 955, 1307, 1614, 1631
PleI	GAGTC	8 cut(s)	290, 337, 575, 795, 1007, 1715, 1828, 1834
PluTI	GGCGCC	1 cut(s)	1205
PpsI	GAGTC	8 cut(s)	290, 337, 575, 795, 1007, 1715, 1828, 1834
Psp1406I	AACGTT	1 cut(s)	1268
Psp6I	CCWGG	1 cut(s)	1355
PspFI	CCCAGC	1 cut(s)	1737
PspGI	CCWGG	1 cut(s)	1355
PspN4I	GGNNCC	8 cut(s)	27, 249, 511, 680, 1042, 1203, 1300, 1354
PspPI	GGNCC	5 cut(s)	61, 247, 280, 636, 1299
PsrI	GAACNNNNNNTAC	2 cut(s)	707, 739
PstI	CTGCAG	2 cut(s)	1342, 1413
PstNI	CAGNNNCTG	1 cut(s)	1724
PsuI	RGATCY	3 cut(s)	25, 1617, 1945
PsyI	GACNNNGTC	2 cut(s)	224, 352
RseI	CAYNNNNRTG	1 cut(s)	551
SaqAI	TTAA	6 cut(s)	933, 990, 1062, 1265, 1398, 1962
SatI	GCNGC	9 cut(s)	55, 181, 373, 858, 870, 954, 1306, 1613, 1630
Sau3AI	GATC	5 cut(s)	25, 456, 1447, 1617, 1945
Sau96I	GGNCC	5 cut(s)	61, 247, 280, 636, 1299
SbfI	CCTGCAGG	1 cut(s)	1342
SchI	GAGTC	8 cut(s)	290, 337, 575, 796, 1007, 1715, 1829, 1834
ScrFI	CCNGG	4 cut(s)	212, 538, 721, 1357
SdaI	CCTGCAGG	1 cut(s)	1342
SduI	GDGCHC	3 cut(s)	120, 548, 977
SfaNI	GCATC	2 cut(s)	984, 1630
SfcI	CTRYAG	3 cut(s)	1103, 1338, 1409
SfoI	GGCGCC	1 cut(s)	1203
SgrAI	CRCCGGYG	3 cut(s)	50, 442, 575
SinI	GGWCC	4 cut(s)	61, 247, 280, 1299
SmiMI	CAYNNNNRTG	1 cut(s)	551
SmlI	CTYRAG	2 cut(s)	102, 1730
SmoI	CTYRAG	2 cut(s)	102, 1730
SphI	GCATGC	1 cut(s)	1364
Sse8387I	CCTGCAGG	1 cut(s)	1342
Sse9I	AATT	9 cut(s)	781, 1084, 1180, 1453, 1461, 1602, 1669, 1772, 2025
SseBI	AGGCCT	2 cut(s)	838, 938
SspDI	GGCGCC	1 cut(s)	1201
SspMI	CTAG	3 cut(s)	1020, 1458, 1748
StuI	AGGCCT	2 cut(s)	838, 938
StyD4I	CCNGG	4 cut(s)	210, 536, 719, 1355
StyI	CCWWGG	4 cut(s)	283, 462, 1091, 1157
TaaI	ACNGT	1 cut(s)	454
TaiI	ACGT	4 cut(s)	135, 471, 551, 1271
TaqI	TCGA	4 cut(s)	135, 584, 785, 1446
TasI	AATT	9 cut(s)	781, 1084, 1180, 1453, 1461, 1602, 1669, 1772, 2025
TauI	GCSGC	5 cut(s)	57, 183, 375, 872, 956
TfiI	GAWTC	7 cut(s)	159, 192, 237, 313, 628, 668, 1684
Tru1I	TTAA	6 cut(s)	933, 990, 1062, 1265, 1398, 1962
Tru9I	TTAA	6 cut(s)	933, 990, 1062, 1265, 1398, 1962
TscAI	CASTG	2 cut(s)	974, 1642
TseFI	GTSAC	1 cut(s)	1108
TseI	GCWGC	4 cut(s)	857, 1305, 1612, 1629
Tsp45I	GTSAC	1 cut(s)	1108
TspDTI	ATGAA	6 cut(s)	17, 759, 1024, 1804, 1992, 2024
TspGWI	ACGGA	3 cut(s)	142, 373, 1234
TspRI	CASTG	2 cut(s)	974, 1642
Tth111I	GACNNNGTC	2 cut(s)	224, 352
Van91I	CCANNNNNTGG	1 cut(s)	540
VpaK11BI	GGWCC	4 cut(s)	61, 247, 280, 1299
XapI	RAATTY	6 cut(s)	781, 1180, 1453, 1461, 1772, 2025
XbaI	TCTAGA	1 cut(s)	1457
XceI	RCATGY	1 cut(s)	1364
XcmI	CCANNNNNNNNNTGG	3 cut(s)	241, 689, 1195
XmiI	GTMKAC	1 cut(s)	1321
XspI	CTAG	3 cut(s)	1020, 1458, 1748
ZraI	GACGTC	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.