Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G28350 AT2G28350 |
| fragaria_vesca | FvH4_3g32000 FvH4_3g32000 FvH4_6g15960 FvH4_6g15960 FvH4_6g15960 |
| malus_domestica | MD03G1119500.v1.1 MD03G1119700.v1.1 MD04G1096900.v1.1 |
| prunus_persica | Prupe.6G102800_v2.0.a1 Prupe.6G102800_v2.0.a1 Prupe.6G102800_v2.0.a1 Prupe.6G236200_v2.0.a1 Prupe.6G236200_v2.0.a1 Prupe.6G236200_v2.0.a1 |
| pyrus_communis | pycom04g09200 pycom11g11370 pycom12g11700 |
| rosa_chinensis | RchiOBHm_Chr3g0469661 RchiOBHm_Chr5g0058761 |
| rosa_laevigata | RLG00000024330 RLG00000035245 |
| rosa_multiflora | Rmu_sc0000367.1_g000238 Rmu_sc0006483.1_g000023 Rmu_sc0030116.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00021650 Rroxscaffold_6G00411580 |
| rosa_rugosa | Rorug03G0103100 Rorug03G0103200 Rorug03G0103300 Rorug05G0317900 |
| rosa_samantha | Rh3AG152700 Rh3BG176500 Rh3CG167500 Rh3DG199100 Rh5AG383600 Rh5BG395500 Rh5CG419200 Rh5DG410900 |
| rosa_wichuraiana | Rw3G014400 Rw5G036140 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 4 |
| AccI | GTMKAC | 2 cut(s) | 124, 892 |
| AciI | CCGC | 2 cut(s) | 17, 41 |
| AclI | AACGTT | 1 cut(s) | 71 |
| AclWI | GGATC | 1 cut(s) | 743 |
| AcoI | YGGCCR | 2 cut(s) | 286, 837 |
| AcsI | RAATTY | 4 cut(s) | 256, 264, 575, 794 |
| AfeI | AGCGCT | 1 cut(s) | 539 |
| AflIII | ACRYGT | 1 cut(s) | 830 |
| AgeI | ACCGGT | 1 cut(s) | 599 |
| AgsI | TTSAA | 3 cut(s) | 478, 568, 581 |
| AjiI | CACGTC | 1 cut(s) | 833 |
| AjnI | CCWGG | 1 cut(s) | 158 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 879, 911 |
| AluBI | AGCT | 3 cut(s) | 432, 584, 659 |
| AluI | AGCT | 3 cut(s) | 432, 584, 659 |
| AlwI | GGATC | 1 cut(s) | 743 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 527 |
| Ama87I | CYCGRG | 1 cut(s) | 98 |
| Aor51HI | AGCGCT | 1 cut(s) | 539 |
| AoxI | GGCC | 2 cut(s) | 286, 837 |
| ApeKI | GCWGC | 3 cut(s) | 108, 415, 432 |
| ApoI | RAATTY | 4 cut(s) | 256, 264, 575, 794 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 904, 936 |
| AsiGI | ACCGGT | 1 cut(s) | 599 |
| AspLEI | GCGC | 1 cut(s) | 540 |
| AspS9I | GGNCC | 2 cut(s) | 102, 917 |
| AsuHPI | GGTGA | 2 cut(s) | 6, 803 |
| AvaI | CYCGRG | 1 cut(s) | 98 |
| AvaII | GGWCC | 2 cut(s) | 102, 917 |
| BanI | GGYRCC | 1 cut(s) | 4 |
| BbvI | GCAGC | 3 cut(s) | 120, 419, 427 |
| BccI | CCATC | 2 cut(s) | 53, 704 |
| BceAI | ACGGC | 2 cut(s) | 61, 301 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 79, 113 |
| BciT130I | CCWGG | 1 cut(s) | 160 |
| BciVI | GTATCC | 2 cut(s) | 47, 589 |
| BfaI | CTAG | 3 cut(s) | 261, 551, 662 |
| BfmI | CTRYAG | 2 cut(s) | 141, 212 |
| BfoI | RGCGCY | 1 cut(s) | 541 |
| BfuI | GTATCC | 2 cut(s) | 47, 589 |
| BglII | AGATCT | 1 cut(s) | 420 |
| BisI | GCNGC | 3 cut(s) | 109, 416, 433 |
| BlpI | GCTNAGC | 1 cut(s) | 728 |
| BlsI | GCNGC | 3 cut(s) | 110, 417, 434 |
| Bme1390I | CCNGG | 1 cut(s) | 160 |
| Bme18I | GGWCC | 2 cut(s) | 102, 917 |
| BmeT110I | CYCGRG | 1 cut(s) | 98 |
| BmgBI | CACGTC | 1 cut(s) | 833 |
| BmgT120I | GGNCC | 2 cut(s) | 102, 917 |
| BmiI | GGNNCC | 3 cut(s) | 6, 103, 157 |
| BmrFI | CCNGG | 1 cut(s) | 160 |
| BmsI | GCATC | 4 cut(s) | 285, 433, 714, 911 |
| BpmI | CTGGAG | 2 cut(s) | 421, 795 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 728 |
| BpuEI | CTTGAG | 1 cut(s) | 554 |
| BsaBI | GATNNNNATC | 1 cut(s) | 486 |
| BsaJI | CCNNGG | 2 cut(s) | 97, 627 |
| BsaWI | WCCGGW | 2 cut(s) | 599, 718 |
| Bse118I | RCCGGY | 1 cut(s) | 599 |
| Bse1I | ACTGG | 5 cut(s) | 234, 379, 438, 778, 919 |
| Bse3DI | GCAATG | 1 cut(s) | 604 |
| Bse8I | GATNNNNATC | 1 cut(s) | 486 |
| BseBI | CCWGG | 1 cut(s) | 160 |
| BseDI | CCNNGG | 2 cut(s) | 97, 627 |
| BseGI | GGATG | 1 cut(s) | 637 |
| BseJI | GATNNNNATC | 1 cut(s) | 486 |
| BseMI | GCAATG | 1 cut(s) | 604 |
| BseMII | CTCAG | 3 cut(s) | 402, 669, 719 |
| BseNI | ACTGG | 5 cut(s) | 234, 379, 438, 778, 919 |
| BseXI | GCAGC | 3 cut(s) | 120, 419, 427 |
| BseYI | CCCAGC | 1 cut(s) | 540 |
| BshFI | GGCC | 2 cut(s) | 288, 839 |
| BshNI | GGYRCC | 1 cut(s) | 4 |
| BshTI | ACCGGT | 1 cut(s) | 599 |
| BsiHKCI | CYCGRG | 1 cut(s) | 98 |
| BsiSI | CCGG | 3 cut(s) | 600, 719, 836 |
| BsnI | GGCC | 2 cut(s) | 288, 839 |
| BsoBI | CYCGRG | 1 cut(s) | 98 |
| Bsp143I | GATC | 3 cut(s) | 250, 420, 748 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 728 |
| BspACI | CCGC | 2 cut(s) | 17, 41 |
| BspANI | GGCC | 2 cut(s) | 288, 839 |
| BspCNI | CTCAG | 3 cut(s) | 403, 668, 720 |
| BspLI | GGNNCC | 3 cut(s) | 6, 103, 157 |
| BspMAI | CTGCAG | 2 cut(s) | 145, 216 |
| BspPI | GGATC | 1 cut(s) | 743 |
| BspT107I | GGYRCC | 1 cut(s) | 4 |
| BsrDI | GCAATG | 1 cut(s) | 604 |
| BsrFI | RCCGGY | 1 cut(s) | 599 |
| BsrI | ACTGG | 5 cut(s) | 234, 379, 438, 778, 919 |
| BssAI | RCCGGY | 1 cut(s) | 599 |
| BssECI | CCNNGG | 2 cut(s) | 97, 627 |
| BssMI | GATC | 3 cut(s) | 250, 420, 748 |
| Bst2UI | CCWGG | 1 cut(s) | 160 |
| BstC8I | GCNNGC | 2 cut(s) | 145, 165 |
| BstDEI | CTNAG | 5 cut(s) | 173, 411, 655, 728, 936 |
| BstF5I | GGATG | 1 cut(s) | 637 |
| BstH2I | RGCGCY | 1 cut(s) | 541 |
| BstHHI | GCGC | 1 cut(s) | 540 |
| BstKTI | GATC | 3 cut(s) | 253, 423, 751 |
| BstMBI | GATC | 3 cut(s) | 250, 420, 748 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 40, 164, 220, 306 |
| BstNI | CCWGG | 1 cut(s) | 160 |
| BstNSI | RCATGY | 1 cut(s) | 167 |
| BstSCI | CCNGG | 1 cut(s) | 158 |
| BstSFI | CTRYAG | 2 cut(s) | 141, 212 |
| BstV1I | GCAGC | 3 cut(s) | 120, 419, 427 |
| BstX2I | RGATCY | 2 cut(s) | 420, 748 |
| BstYI | RGATCY | 2 cut(s) | 420, 748 |
| BsuI | GTATCC | 2 cut(s) | 47, 589 |
| BsuRI | GGCC | 2 cut(s) | 288, 839 |
| BtrI | CACGTC | 1 cut(s) | 833 |
| BtsCI | GGATG | 1 cut(s) | 637 |
| BtsIMutI | CAGTG | 1 cut(s) | 445 |
| Cac8I | GCNNGC | 2 cut(s) | 145, 165 |
| CaiI | CAGNNNCTG | 1 cut(s) | 527 |
| CfoI | GCGC | 1 cut(s) | 540 |
| Cfr10I | RCCGGY | 1 cut(s) | 599 |
| Cfr13I | GGNCC | 2 cut(s) | 102, 917 |
| CspAI | ACCGGT | 1 cut(s) | 599 |
| CviAII | CATG | 6 cut(s) | 115, 164, 619, 700, 734, 861 |
| DdeI | CTNAG | 5 cut(s) | 173, 411, 655, 728, 936 |
| DpnI | GATC | 3 cut(s) | 252, 422, 750 |
| DpnII | GATC | 3 cut(s) | 250, 420, 748 |
| EaeI | YGGCCR | 2 cut(s) | 286, 837 |
| Eco47I | GGWCC | 2 cut(s) | 102, 917 |
| Eco47III | AGCGCT | 1 cut(s) | 539 |
| Eco88I | CYCGRG | 1 cut(s) | 98 |
| EcoRI | GAATTC | 1 cut(s) | 264 |
| EcoRII | CCWGG | 1 cut(s) | 158 |
| FaeI | CATG | 6 cut(s) | 118, 167, 622, 703, 737, 864 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 298, 330 |
| FatI | CATG | 6 cut(s) | 114, 163, 618, 699, 733, 860 |
| FauI | CCCGC | 1 cut(s) | 48 |
| FblI | GTMKAC | 2 cut(s) | 124, 892 |
| Fnu4HI | GCNGC | 3 cut(s) | 109, 416, 433 |
| FokI | GGATG | 1 cut(s) | 644 |
| Fsp4HI | GCNGC | 3 cut(s) | 109, 416, 433 |
| FspBI | CTAG | 3 cut(s) | 261, 551, 662 |
| GlaI | GCGC | 1 cut(s) | 539 |
| GluI | GCNGC | 3 cut(s) | 109, 416, 433 |
| GsaI | CCCAGC | 1 cut(s) | 544 |
| GsuI | CTGGAG | 2 cut(s) | 421, 795 |
| HaeII | RGCGCY | 1 cut(s) | 541 |
| HaeIII | GGCC | 2 cut(s) | 288, 839 |
| HapII | CCGG | 3 cut(s) | 600, 719, 836 |
| HhaI | GCGC | 1 cut(s) | 540 |
| Hin1II | CATG | 6 cut(s) | 118, 167, 622, 703, 737, 864 |
| Hin6I | GCGC | 1 cut(s) | 538 |
| HinP1I | GCGC | 1 cut(s) | 538 |
| HincII | GTYRAC | 2 cut(s) | 69, 398 |
| HindII | GTYRAC | 2 cut(s) | 69, 398 |
| HinfI | GANTC | 4 cut(s) | 487, 524, 623, 643 |
| HpaI | GTTAAC | 1 cut(s) | 69 |
| HpaII | CCGG | 3 cut(s) | 600, 719, 836 |
| HphI | GGTGA | 2 cut(s) | 6, 803 |
| Hpy166II | GTNNAC | 4 cut(s) | 69, 125, 398, 893 |
| Hpy188I | TCNGA | 4 cut(s) | 345, 361, 523, 628 |
| Hpy188III | TCNNGA | 5 cut(s) | 241, 261, 280, 533, 647 |
| Hpy8I | GTNNAC | 4 cut(s) | 69, 125, 398, 893 |
| HpyAV | CCTTC | 2 cut(s) | 633, 849 |
| HpyCH4IV | ACGT | 2 cut(s) | 71, 832 |
| HpyCH4V | TGCA | 6 cut(s) | 143, 214, 446, 563, 609, 902 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 40, 164, 220, 306 |
| HpyF3I | CTNAG | 5 cut(s) | 173, 411, 655, 728, 936 |
| HpySE526I | ACGT | 2 cut(s) | 71, 832 |
| Hsp92II | CATG | 6 cut(s) | 118, 167, 622, 703, 737, 864 |
| HspAI | GCGC | 1 cut(s) | 538 |
| KspAI | GTTAAC | 1 cut(s) | 69 |
| Kzo9I | GATC | 3 cut(s) | 250, 420, 748 |
| LmnI | GCTCC | 2 cut(s) | 155, 440 |
| Lsp1109I | GCAGC | 3 cut(s) | 120, 419, 427 |
| LweI | GCATC | 4 cut(s) | 285, 433, 714, 911 |
| MaeI | CTAG | 3 cut(s) | 261, 551, 662 |
| MaeII | ACGT | 2 cut(s) | 71, 832 |
| MalI | GATC | 3 cut(s) | 252, 422, 750 |
| MboI | GATC | 3 cut(s) | 250, 420, 748 |
| MboII | GAAGA | 1 cut(s) | 37 |
| MflI | RGATCY | 2 cut(s) | 420, 748 |
| MluCI | AATT | 6 cut(s) | 256, 264, 405, 472, 575, 794 |
| MlyI | GAGTC | 3 cut(s) | 518, 632, 637 |
| MmeI | TCCRAC | 2 cut(s) | 616, 776 |
| MnlI | CCTC | 5 cut(s) | 107, 237, 622, 662, 681 |
| MseI | TTAA | 4 cut(s) | 68, 201, 765, 798 |
| MspI | CCGG | 3 cut(s) | 600, 719, 836 |
| MspR9I | CCNGG | 1 cut(s) | 160 |
| MvaI | CCWGG | 1 cut(s) | 160 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 40, 164, 220, 306 |
| NdeII | GATC | 3 cut(s) | 250, 420, 748 |
| NlaIII | CATG | 6 cut(s) | 118, 167, 622, 703, 737, 864 |
| NlaIV | GGNNCC | 3 cut(s) | 6, 103, 157 |
| NspI | RCATGY | 1 cut(s) | 167 |
| PaeI | GCATGC | 1 cut(s) | 167 |
| PfeI | GAWTC | 1 cut(s) | 487 |
| PinAI | ACCGGT | 1 cut(s) | 599 |
| PkrI | GCNGC | 3 cut(s) | 110, 417, 434 |
| PleI | GAGTC | 3 cut(s) | 518, 631, 637 |
| PpsI | GAGTC | 3 cut(s) | 518, 631, 637 |
| Psp1406I | AACGTT | 1 cut(s) | 71 |
| Psp6I | CCWGG | 1 cut(s) | 158 |
| PspFI | CCCAGC | 1 cut(s) | 540 |
| PspGI | CCWGG | 1 cut(s) | 158 |
| PspN4I | GGNNCC | 3 cut(s) | 6, 103, 157 |
| PspPI | GGNCC | 2 cut(s) | 102, 917 |
| PstI | CTGCAG | 2 cut(s) | 145, 216 |
| PstNI | CAGNNNCTG | 1 cut(s) | 527 |
| PsuI | RGATCY | 2 cut(s) | 420, 748 |
| SaqAI | TTAA | 4 cut(s) | 68, 201, 765, 798 |
| SatI | GCNGC | 3 cut(s) | 109, 416, 433 |
| Sau3AI | GATC | 3 cut(s) | 250, 420, 748 |
| Sau96I | GGNCC | 2 cut(s) | 102, 917 |
| SbfI | CCTGCAGG | 1 cut(s) | 145 |
| SchI | GAGTC | 3 cut(s) | 518, 632, 637 |
| ScrFI | CCNGG | 1 cut(s) | 160 |
| SdaI | CCTGCAGG | 1 cut(s) | 145 |
| SfaNI | GCATC | 4 cut(s) | 285, 433, 714, 911 |
| SfcI | CTRYAG | 2 cut(s) | 141, 212 |
| SinI | GGWCC | 2 cut(s) | 102, 917 |
| SmlI | CTYRAG | 1 cut(s) | 533 |
| SmoI | CTYRAG | 1 cut(s) | 533 |
| SphI | GCATGC | 1 cut(s) | 167 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 145 |
| Sse9I | AATT | 6 cut(s) | 256, 264, 405, 472, 575, 794 |
| SsiI | CCGC | 2 cut(s) | 17, 41 |
| SspMI | CTAG | 3 cut(s) | 261, 551, 662 |
| StyD4I | CCNGG | 1 cut(s) | 158 |
| TaiI | ACGT | 2 cut(s) | 74, 835 |
| TaqI | TCGA | 1 cut(s) | 249 |
| TasI | AATT | 6 cut(s) | 256, 264, 405, 472, 575, 794 |
| TfiI | GAWTC | 1 cut(s) | 487 |
| Tru1I | TTAA | 4 cut(s) | 68, 201, 765, 798 |
| Tru9I | TTAA | 4 cut(s) | 68, 201, 765, 798 |
| TscAI | CASTG | 1 cut(s) | 445 |
| TseI | GCWGC | 3 cut(s) | 108, 415, 432 |
| TspDTI | ATGAA | 3 cut(s) | 607, 795, 858 |
| TspRI | CASTG | 1 cut(s) | 445 |
| VpaK11BI | GGWCC | 2 cut(s) | 102, 917 |
| XapI | RAATTY | 4 cut(s) | 256, 264, 575, 794 |
| XbaI | TCTAGA | 1 cut(s) | 260 |
| XceI | RCATGY | 1 cut(s) | 167 |
| XmiI | GTMKAC | 2 cut(s) | 124, 892 |
| XspI | CTAG | 3 cut(s) | 261, 551, 662 |