Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002309

Physical Location & Seq

Genomic Coordinates Reverse (-)

10943047 .. 10943577

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1119700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAAAGAGTCGGAGAAAAGCTTGGATCCTCAGCTGTGGCACGCCTGCGCCGGCGGCATGGTCCACATGCCTCCGGTGAACTCCAAAGTCTTCTACTTTCCGCAAGGCCACGCCGAGCACGCCCAATCAGGCGGCGGCGTCGATTTCTCGGCCGCCTCGCTAAGGATCCCCTCGCTGGTTCTCTGCAGAGTGGCCGCCATCAAGTTCATGGCGGACCCGGAAACCGATGAGGTGTTCGCCAAGATTAGGATGAACCCAATCGAGAACGAGGCCTTTGCCGCGGAAGACGGGGATACGGAGGCATATGGGTCGGAAAATCAGGAAAAGCCGGCGTCTTTCGCCAAGACGCTGACCCAATCCGACGCCAACAATGGCGGCGGGTTCTCTGTCCCCAGACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

134

Amino Acids

14.34

Weight (kDa)

5.12

Isoelectric Point (pI)

54.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28350 AT2G28350
fragaria_vesca	FvH4_3g32000 FvH4_3g32000 FvH4_6g15960 FvH4_6g15960 FvH4_6g15960
malus_domestica	MD03G1119500.v1.1 MD03G1119700.v1.1 MD04G1096900.v1.1
prunus_persica	Prupe.6G102800_v2.0.a1 Prupe.6G102800_v2.0.a1 Prupe.6G102800_v2.0.a1 Prupe.6G236200_v2.0.a1 Prupe.6G236200_v2.0.a1 Prupe.6G236200_v2.0.a1
pyrus_communis	pycom04g09200 pycom11g11370 pycom12g11700
rosa_chinensis	RchiOBHm_Chr3g0469661 RchiOBHm_Chr5g0058761
rosa_laevigata	RLG00000024330 RLG00000035245
rosa_multiflora	Rmu_sc0000367.1_g000238 Rmu_sc0006483.1_g000023 Rmu_sc0030116.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021650 Rroxscaffold_6G00411580
rosa_rugosa	Rorug03G0103100 Rorug03G0103200 Rorug03G0103300 Rorug05G0317900
rosa_samantha	Rh3AG152700 Rh3BG176500 Rh3CG167500 Rh3DG199100 Rh5AG383600 Rh5BG395500 Rh5CG419200 Rh5DG410900
rosa_wichuraiana	Rw3G014400 Rw5G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	281
AclWI	GGATC	4 cut(s)	20, 33, 160, 173
AcoI	YGGCCR	2 cut(s)	150, 192
AcyI	GRCGYC	3 cut(s)	138, 332, 363
AfiI	CCNNNNNNNGG	3 cut(s)	162, 175, 246
AluBI	AGCT	2 cut(s)	21, 34
AluI	AGCT	2 cut(s)	21, 34
Alw21I	GWGCWC	1 cut(s)	120
AlwI	GGATC	4 cut(s)	20, 33, 160, 173
AoxI	GGCC	4 cut(s)	106, 150, 192, 270
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	2 cut(s)	61, 214
AsuC2I	CCSGG	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	88
AvaII	GGWCC	2 cut(s)	61, 214
BamHI	GGATCC	2 cut(s)	25, 165
BbsI	GAAGAC	2 cut(s)	82, 291
Bbv12I	GWGCWC	1 cut(s)	120
BbvCI	CCTCAGC	1 cut(s)	30
BccI	CCATC	1 cut(s)	206
BcgI	CGANNNNNNTGC	4 cut(s)	257, 291, 291, 325
BciVI	GTATCC	1 cut(s)	286
BcnI	CCSGG	1 cut(s)	218
BfmI	CTRYAG	1 cut(s)	184
BfuI	GTATCC	1 cut(s)	286
BisI	GCNGC	7 cut(s)	55, 133, 136, 153, 195, 279, 376
BlsI	GCNGC	7 cut(s)	56, 134, 137, 154, 196, 280, 377
Bme1390I	CCNGG	1 cut(s)	218
Bme18I	GGWCC	2 cut(s)	61, 214
BmgT120I	GGNCC	2 cut(s)	61, 214
BmiI	GGNNCC	3 cut(s)	27, 167, 216
BmrFI	CCNGG	1 cut(s)	218
BpiI	GAAGAC	2 cut(s)	82, 291
Bpu10I	CCTNAGC	2 cut(s)	30, 161
BpuMI	CCSGG	1 cut(s)	218
BsaHI	GRCGYC	3 cut(s)	138, 332, 363
BsaJI	CCNNGG	1 cut(s)	279
BsaWI	WCCGGW	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	3 cut(s)	162, 175, 246
Bse118I	RCCGGY	2 cut(s)	50, 328
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	1 cut(s)	255
BseLI	CCNNNNNNNGG	3 cut(s)	162, 175, 246
BseMII	CTCAG	1 cut(s)	44
BseX3I	CGGCCG	1 cut(s)	150
Bsh1236I	CGCG	1 cut(s)	281
Bsh1285I	CGRYCG	1 cut(s)	153
BshFI	GGCC	4 cut(s)	108, 152, 194, 272
BsiEI	CGRYCG	1 cut(s)	153
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	4 cut(s)	51, 74, 218, 329
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	3 cut(s)	162, 175, 246
BsmFI	GGGAC	1 cut(s)	374
BsnI	GGCC	4 cut(s)	108, 152, 194, 272
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	2 cut(s)	25, 165
BspANI	GGCC	4 cut(s)	108, 152, 194, 272
BspCNI	CTCAG	1 cut(s)	43
BspFNI	CGCG	1 cut(s)	281
BspLI	GGNNCC	3 cut(s)	27, 167, 216
BspMAI	CTGCAG	1 cut(s)	188
BspPI	GGATC	4 cut(s)	20, 33, 160, 173
BsrFI	RCCGGY	2 cut(s)	50, 328
BssAI	RCCGGY	2 cut(s)	50, 328
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	2 cut(s)	25, 165
BssNI	GRCGYC	3 cut(s)	138, 332, 363
Bst4CI	ACNGT	1 cut(s)	399
BstACI	GRCGYC	3 cut(s)	138, 332, 363
BstC8I	GCNNGC	5 cut(s)	42, 46, 52, 120, 330
BstDEI	CTNAG	2 cut(s)	30, 161
BstDSI	CCRYGG	1 cut(s)	279
BstENI	CCTNNNNNAGG	1 cut(s)	160
BstF5I	GGATG	1 cut(s)	255
BstFNI	CGCG	1 cut(s)	281
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	2 cut(s)	28, 168
BstMBI	GATC	2 cut(s)	25, 165
BstMCI	CGRYCG	1 cut(s)	153
BstMWI	GCNNNNNNNGC	4 cut(s)	54, 119, 278, 338
BstNSI	RCATGY	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	216
BstSFI	CTRYAG	1 cut(s)	184
BstUI	CGCG	1 cut(s)	281
BstV2I	GAAGAC	2 cut(s)	82, 291
BstX2I	RGATCY	2 cut(s)	25, 165
BstYI	RGATCY	2 cut(s)	25, 165
BstZI	CGGCCG	1 cut(s)	150
BsuI	GTATCC	1 cut(s)	286
BsuRI	GGCC	4 cut(s)	108, 152, 194, 272
BtgI	CCRYGG	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	255
Cac8I	GCNNGC	5 cut(s)	42, 46, 52, 120, 330
CfoI	GCGC	1 cut(s)	50
Cfr10I	RCCGGY	2 cut(s)	50, 328
Cfr13I	GGNCC	2 cut(s)	61, 214
Cfr42I	CCGCGG	1 cut(s)	282
CseI	GACGC	4 cut(s)	127, 321, 355, 371
CviAII	CATG	3 cut(s)	58, 67, 208
CviJI	RGCY	7 cut(s)	21, 34, 108, 152, 194, 272, 328
CviKI_1	RGCY	7 cut(s)	21, 34, 108, 152, 194, 272, 328
DdeI	CTNAG	2 cut(s)	30, 161
DpnI	GATC	2 cut(s)	27, 167
DpnII	GATC	2 cut(s)	25, 165
EaeI	YGGCCR	2 cut(s)	150, 192
EagI	CGGCCG	1 cut(s)	150
EciI	GGCGGA	1 cut(s)	227
EclXI	CGGCCG	1 cut(s)	150
Eco147I	AGGCCT	1 cut(s)	272
Eco47I	GGWCC	2 cut(s)	61, 214
Eco52I	CGGCCG	1 cut(s)	150
EcoNI	CCTNNNNNAGG	1 cut(s)	160
FaeI	CATG	3 cut(s)	61, 70, 211
FaiI	YATR	5 cut(s)	59, 68, 209, 304, 306
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	3 cut(s)	57, 66, 207
FauI	CCCGC	1 cut(s)	371
FauNDI	CATATG	1 cut(s)	304
Fnu4HI	GCNGC	7 cut(s)	55, 133, 136, 153, 195, 279, 376
FokI	GGATG	1 cut(s)	262
Fsp4HI	GCNGC	7 cut(s)	55, 133, 136, 153, 195, 279, 376
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	7 cut(s)	55, 133, 136, 153, 195, 279, 376
HaeIII	GGCC	4 cut(s)	108, 152, 194, 272
HapII	CCGG	4 cut(s)	51, 74, 218, 329
HgaI	GACGC	4 cut(s)	127, 321, 355, 371
HhaI	GCGC	1 cut(s)	50
Hin1I	GRCGYC	3 cut(s)	138, 332, 363
Hin1II	CATG	3 cut(s)	61, 70, 211
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HindIII	AAGCTT	1 cut(s)	19
HinfI	GANTC	1 cut(s)	8
HpaII	CCGG	4 cut(s)	51, 74, 218, 329
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	2 cut(s)	64, 79
Hpy188I	TCNGA	3 cut(s)	13, 313, 361
Hpy188III	TCNNGA	2 cut(s)	262, 320
Hpy8I	GTNNAC	2 cut(s)	64, 79
Hpy99I	CGWCG	2 cut(s)	143, 365
HpyCH4III	ACNGT	1 cut(s)	399
HpyCH4V	TGCA	1 cut(s)	186
HpyF10VI	GCNNNNNNNGC	4 cut(s)	54, 119, 278, 338
HpyF3I	CTNAG	2 cut(s)	30, 161
Hsp92I	GRCGYC	3 cut(s)	138, 332, 363
Hsp92II	CATG	3 cut(s)	61, 70, 211
HspAI	GCGC	1 cut(s)	48
KroI	GCCGGC	2 cut(s)	50, 328
KroNI	GCCGGC	2 cut(s)	52, 330
KspI	CCGCGG	1 cut(s)	282
Kzo9I	GATC	2 cut(s)	25, 165
LpnPI	CCDG	8 cut(s)	58, 64, 87, 114, 161, 231, 305, 342
MalI	GATC	2 cut(s)	27, 167
MboI	GATC	2 cut(s)	25, 165
MboII	GAAGA	2 cut(s)	82, 296
MflI	RGATCY	2 cut(s)	25, 165
MhlI	GDGCHC	1 cut(s)	120
MlyI	GAGTC	1 cut(s)	17
MmeI	TCCRAC	2 cut(s)	291, 384
MnlI	CCTC	7 cut(s)	39, 81, 166, 181, 223, 262, 292
MreI	CGCCGGCG	1 cut(s)	50
MroNI	GCCGGC	2 cut(s)	50, 328
MspA1I	CMGCKG	2 cut(s)	34, 281
MspI	CCGG	4 cut(s)	51, 74, 218, 329
MspR9I	CCNGG	1 cut(s)	218
MvnI	CGCG	1 cut(s)	281
MwoI	GCNNNNNNNGC	4 cut(s)	54, 119, 278, 338
NaeI	GCCGGC	2 cut(s)	52, 330
NciI	CCSGG	1 cut(s)	218
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	2 cut(s)	25, 165
NgoMIV	GCCGGC	2 cut(s)	50, 328
NlaIII	CATG	3 cut(s)	61, 70, 211
NlaIV	GGNNCC	3 cut(s)	27, 167, 216
NmeAIII	GCCGAG	2 cut(s)	128, 139
NspI	RCATGY	1 cut(s)	70
PceI	AGGCCT	1 cut(s)	272
PdiI	GCCGGC	2 cut(s)	52, 330
PkrI	GCNGC	7 cut(s)	56, 134, 137, 154, 196, 280, 377
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PspN4I	GGNNCC	3 cut(s)	27, 167, 216
PspPI	GGNCC	2 cut(s)	61, 214
PstI	CTGCAG	1 cut(s)	188
PsuI	RGATCY	2 cut(s)	25, 165
PvuII	CAGCTG	1 cut(s)	34
SacII	CCGCGG	1 cut(s)	282
SatI	GCNGC	7 cut(s)	55, 133, 136, 153, 195, 279, 376
Sau3AI	GATC	2 cut(s)	25, 165
Sau96I	GGNCC	2 cut(s)	61, 214
SchI	GAGTC	1 cut(s)	17
ScrFI	CCNGG	1 cut(s)	218
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	3 cut(s)	23, 36, 234
SfcI	CTRYAG	1 cut(s)	184
Sfr303I	CCGCGG	1 cut(s)	282
SgrAI	CRCCGGYG	1 cut(s)	50
SgrBI	CCGCGG	1 cut(s)	282
SinI	GGWCC	2 cut(s)	61, 214
SseBI	AGGCCT	1 cut(s)	272
StuI	AGGCCT	1 cut(s)	272
StyD4I	CCNGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	399
TaqI	TCGA	2 cut(s)	141, 261
TauI	GCSGC	7 cut(s)	57, 135, 138, 155, 197, 281, 378
TspDTI	ATGAA	3 cut(s)	17, 196, 266
TspGWI	ACGGA	1 cut(s)	311
VpaK11BI	GGWCC	2 cut(s)	61, 214
XagI	CCTNNNNNAGG	1 cut(s)	160
XceI	RCATGY	1 cut(s)	70
XcmI	CCANNNNNNNNNTGG	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.