Rorug03G0103100

Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0002309
Physical Location & Seq
Reverse (-)
8097250 .. 8099547
2298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0103100.1

Sequence Viewer

Length: 954 bp
ATGGATAGTCCCACAAATTTTAAAGTCTCCTTGTCCTTCCTTTTGCTTCTAGTCGGAATAGCTTCTGCTCAGTTGTCCTCTACTTTCTATTCAAGCTCATGTCCCAACGCCCTCTCCACCATCAAATCAGCCGTGGACTCGGCCGTTTCAAGCGAGGCTCGCATGGGAGCCTCCTTGCTCCGCCTCCATTTTCATGATTGCTTTGTTAATGGATGCGATGCTTCGGTACTGTTGGATGACACGGCCAATTTCACTGGCGAGAAGACTGCCGGCCCTAATGCTAATTCTTTGAGGGGATTCGACGTAGTCGACACCATTAAAACGCAACTAGAGAGTCTCTGCCCCGGTGTCGTCTCTTGTGCTGACATATTGGCCGTCGCTGCTAGAGACTCCGTTGTCGCCTTGAATGGACCTAGCTGGACAGTGCAATTGGGGAGAAGAGACTCCACCGACGCGAGTTTAAGTGCTGCTAATACCAACCTTCCAGCTCCTACCTTGAATCTTAGTGCCCTAATTACTTCTTTCTCAAACAAAGGTTTCAATGCCAATGAACTGGTGGCTCTCTCAGGGTCTCATACAATTGGGCAAGCAAGGTGCACAACTTTTAGGGCAAGGCTTTACAATGAAGCCAACATAAACTCCTCATTCGCAACATCGCTACAAGCAAATTGTCCCAGCAGTGGTGGTGATGACACCCTTTCCCCGCTTGATGTCACAACTCCAAACACGTTTGACAATGCTTACTTCAATAACTTGGTGAGCCAAAAGGGTCTGTTGCACTCCGATCAACAACTCTTTAACGGCGGTTCCACGGACTCTCAGGTGAATGCCTATATTAGCAACCCAGGAAGTTTCAGCACGGACTTTGCCAACGCTATGGTGAAGATGGGAAACCTTAGCCCTCTCACGGGCACCGACGGTCAGATTAGGACCGATTGTAAGAAGGTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_resp B3

Protein Analysis

317

Amino Acids

33.22

Weight (kDa)

4.98

Isoelectric Point (pI)

30.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 42 - 280 7.3e-87 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 395
AccB1I GGYRCC 1 cut(s) 911
AccI GTMKAC 1 cut(s) 309
AccII CGCG 1 cut(s) 455
AciI CCGC 3 cut(s) 181, 704, 804
AcoI YGGCCR 3 cut(s) 141, 243, 372
AcsI RAATTY 1 cut(s) 16
AfaI GTAC 1 cut(s) 228
AfiI CCNNNNNNNGG 3 cut(s) 680, 907, 908
AflIII ACRYGT 1 cut(s) 726
AgsI TTSAA 6 cut(s) 93, 150, 406, 499, 541, 748
AjnI CCWGG 1 cut(s) 844
AluBI AGCT 4 cut(s) 62, 96, 417, 488
AluI AGCT 4 cut(s) 62, 96, 417, 488
Alw21I GWGCWC 1 cut(s) 599
Alw26I GTCTC 6 cut(s) 31, 341, 358, 381, 435, 576
Alw44I GTGCAC 1 cut(s) 595
AoxI GGCC 4 cut(s) 141, 243, 271, 372
ApaLI GTGCAC 1 cut(s) 595
ApeKI GCWGC 2 cut(s) 380, 467
ApoI RAATTY 1 cut(s) 16
Asp700I GAANNNNTTC 1 cut(s) 61
AspS9I GGNCC 3 cut(s) 272, 410, 930
AsuC2I CCSGG 1 cut(s) 345
AsuHPI GGTGA 4 cut(s) 698, 769, 835, 892
AvaII GGWCC 2 cut(s) 410, 930
BaeGI GKGCMC 3 cut(s) 511, 599, 914
BanI GGYRCC 1 cut(s) 911
BbsI GAAGAC 1 cut(s) 269
Bbv12I GWGCWC 1 cut(s) 599
BbvI GCAGC 2 cut(s) 367, 454
BccI CCATC 2 cut(s) 128, 880
BceAI ACGGC 5 cut(s) 116, 128, 258, 359, 817
BcgI CGANNNNNNTGC 2 cut(s) 248, 282
BciT130I CCWGG 1 cut(s) 846
BcnI CCSGG 1 cut(s) 345
BcoDI GTCTC 6 cut(s) 31, 341, 358, 381, 435, 576
BfaI CTAG 4 cut(s) 50, 329, 384, 414
BisI GCNGC 2 cut(s) 381, 468
BlsI GCNGC 2 cut(s) 382, 469
Bme1390I CCNGG 2 cut(s) 345, 846
Bme18I GGWCC 2 cut(s) 410, 930
BmgT120I GGNCC 3 cut(s) 272, 410, 930
BmiI GGNNCC 3 cut(s) 169, 808, 913
BmrFI CCNGG 2 cut(s) 345, 846
BmsI GCATC 2 cut(s) 203, 208
BpiI GAAGAC 1 cut(s) 269
Bpu10I CCTNAGC 1 cut(s) 896
BpuMI CCSGG 1 cut(s) 345
BsaI GGTCTC 1 cut(s) 576
BsaJI CCNNGG 4 cut(s) 132, 343, 810, 844
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 623, 653
Bsc4I CCNNNNNNNGG 3 cut(s) 680, 907, 908
Bse118I RCCGGY 1 cut(s) 269
Bse1I ACTGG 2 cut(s) 259, 558
BseBI CCWGG 1 cut(s) 846
BseDI CCNNGG 4 cut(s) 132, 343, 810, 844
BseGI GGATG 2 cut(s) 218, 241
BseLI CCNNNNNNNGG 3 cut(s) 680, 907, 908
BseMII CTCAG 3 cut(s) 83, 579, 833
BseNI ACTGG 2 cut(s) 259, 558
BseRI GAGGAG 1 cut(s) 631
BseSI GKGCMC 3 cut(s) 511, 599, 914
BseX3I CGGCCG 1 cut(s) 141
BseXI GCAGC 2 cut(s) 367, 454
BseYI CCCAGC 1 cut(s) 674
Bsh1236I CGCG 1 cut(s) 455
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 4 cut(s) 143, 245, 273, 374
BshNI GGYRCC 1 cut(s) 911
BsiEI CGRYCG 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 599
BsiSI CCGG 2 cut(s) 270, 345
BslFI GGGAC 2 cut(s) 87, 657
BslI CCNNNNNNNGG 3 cut(s) 680, 907, 908
BsmAI GTCTC 6 cut(s) 31, 341, 358, 381, 435, 576
BsmBI CGTCTC 1 cut(s) 358
BsmFI GGGAC 2 cut(s) 87, 657
BsmI GAATGC 1 cut(s) 832
BsnI GGCC 4 cut(s) 143, 245, 273, 374
Bso31I GGTCTC 1 cut(s) 576
Bsp1286I GDGCHC 3 cut(s) 511, 599, 914
Bsp143I GATC 1 cut(s) 784
BspACI CCGC 3 cut(s) 181, 704, 804
BspANI GGCC 4 cut(s) 143, 245, 273, 374
BspCNI CTCAG 3 cut(s) 82, 578, 832
BspFNI CGCG 1 cut(s) 455
BspHI TCATGA 1 cut(s) 193
BspLI GGNNCC 3 cut(s) 169, 808, 913
BspT107I GGYRCC 1 cut(s) 911
BspTNI GGTCTC 1 cut(s) 576
BsrFI RCCGGY 1 cut(s) 269
BsrI ACTGG 2 cut(s) 259, 558
BssAI RCCGGY 1 cut(s) 269
BssECI CCNNGG 4 cut(s) 132, 343, 810, 844
BssMI GATC 1 cut(s) 784
Bst2UI CCWGG 1 cut(s) 846
Bst4CI ACNGT 3 cut(s) 231, 424, 920
Bst6I CTCTTC 1 cut(s) 433
BstC8I GCNNGC 3 cut(s) 160, 271, 588
BstDEI CTNAG 5 cut(s) 69, 503, 565, 819, 896
BstDSI CCRYGG 2 cut(s) 132, 810
BstF5I GGATG 2 cut(s) 218, 241
BstFNI CGCG 1 cut(s) 455
BstKTI GATC 1 cut(s) 787
BstMAI GTCTC 6 cut(s) 31, 341, 358, 381, 435, 576
BstMBI GATC 1 cut(s) 784
BstMCI CGRYCG 1 cut(s) 144
BstMWI GCNNNNNNNGC 2 cut(s) 159, 380
BstNI CCWGG 1 cut(s) 846
BstSCI CCNGG 2 cut(s) 343, 844
BstSLI GKGCMC 3 cut(s) 511, 599, 914
BstUI CGCG 1 cut(s) 455
BstV1I GCAGC 2 cut(s) 367, 454
BstV2I GAAGAC 1 cut(s) 269
BstXI CCANNNNNNTGG 2 cut(s) 553, 877
BstZI CGGCCG 1 cut(s) 141
BsuRI GGCC 4 cut(s) 143, 245, 273, 374
BtgI CCRYGG 2 cut(s) 132, 810
BtgZI GCGATG 2 cut(s) 231, 639
BtsCI GGATG 2 cut(s) 218, 241
BtsI GCAGTG 1 cut(s) 685
BtsIMutI CAGTG 3 cut(s) 252, 429, 685
Cac8I GCNNGC 3 cut(s) 160, 271, 588
CciI TCATGA 1 cut(s) 193
Cfr10I RCCGGY 1 cut(s) 269
Cfr13I GGNCC 3 cut(s) 272, 410, 930
CseI GACGC 1 cut(s) 461
Csp6I GTAC 1 cut(s) 227
CviAII CATG 3 cut(s) 99, 163, 194
CviQI GTAC 1 cut(s) 227
DdeI CTNAG 5 cut(s) 69, 503, 565, 819, 896
DpnI GATC 1 cut(s) 786
DpnII GATC 1 cut(s) 784
DraI TTTAAA 1 cut(s) 22
DrdI GACNNNNNNGTC 1 cut(s) 395
DseDI GACNNNNNNGTC 1 cut(s) 395
EaeI YGGCCR 3 cut(s) 141, 243, 372
EagI CGGCCG 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 433
EarI CTCTTC 1 cut(s) 433
EciI GGCGGA 1 cut(s) 170
EclXI CGGCCG 1 cut(s) 141
Eco31I GGTCTC 1 cut(s) 576
Eco47I GGWCC 2 cut(s) 410, 930
Eco52I CGGCCG 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 844
Esp3I CGTCTC 1 cut(s) 358
FaeI CATG 3 cut(s) 102, 166, 197
FaiI YATR 8 cut(s) 100, 164, 195, 368, 576, 635, 834, 878
FaqI GGGAC 2 cut(s) 87, 657
FatI CATG 3 cut(s) 98, 162, 193
FauI CCCGC 1 cut(s) 711
FblI GTMKAC 1 cut(s) 309
Fnu4HI GCNGC 2 cut(s) 381, 468
FokI GGATG 2 cut(s) 225, 248
Fsp4HI GCNGC 2 cut(s) 381, 468
FspBI CTAG 4 cut(s) 50, 329, 384, 414
GluI GCNGC 2 cut(s) 381, 468
GsaI CCCAGC 1 cut(s) 678
HaeIII GGCC 4 cut(s) 143, 245, 273, 374
HapII CCGG 2 cut(s) 270, 345
HgaI GACGC 1 cut(s) 461
Hin1II CATG 3 cut(s) 102, 166, 197
HincII GTYRAC 2 cut(s) 310, 949
HindII GTYRAC 2 cut(s) 310, 949
HinfI GANTC 7 cut(s) 137, 297, 334, 389, 443, 499, 815
HpaII CCGG 2 cut(s) 270, 345
HphI GGTGA 4 cut(s) 698, 769, 835, 892
Hpy166II GTNNAC 4 cut(s) 136, 310, 597, 949
Hpy188I TCNGA 3 cut(s) 56, 784, 924
Hpy188III TCNNGA 1 cut(s) 194
Hpy8I GTNNAC 4 cut(s) 136, 310, 597, 949
Hpy99I CGWCG 4 cut(s) 305, 380, 455, 920
HpyAV CCTTC 3 cut(s) 46, 491, 937
HpyCH4III ACNGT 3 cut(s) 231, 424, 920
HpyCH4IV ACGT 2 cut(s) 303, 728
HpyCH4V TGCA 3 cut(s) 427, 597, 778
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 380
HpyF3I CTNAG 5 cut(s) 69, 503, 565, 819, 896
HpySE526I ACGT 2 cut(s) 303, 728
Hsp92II CATG 3 cut(s) 102, 166, 197
KroI GCCGGC 1 cut(s) 269
KroNI GCCGGC 1 cut(s) 271
Kzo9I GATC 1 cut(s) 784
LmnI GCTCC 3 cut(s) 167, 183, 493
Lsp1109I GCAGC 2 cut(s) 367, 454
LweI GCATC 2 cut(s) 203, 208
MaeI CTAG 4 cut(s) 50, 329, 384, 414
MaeII ACGT 2 cut(s) 303, 728
MaeIII GTNAC 1 cut(s) 712
MalI GATC 1 cut(s) 786
MboI GATC 1 cut(s) 784
MboII GAAGA 3 cut(s) 274, 450, 895
MfeI CAATTG 2 cut(s) 428, 579
MhlI GDGCHC 3 cut(s) 511, 599, 914
MluCI AATT 7 cut(s) 16, 247, 283, 428, 513, 579, 667
MlyI GAGTC 5 cut(s) 131, 343, 383, 437, 809
MmeI TCCRAC 2 cut(s) 34, 213
MnlI CCTC 8 cut(s) 88, 122, 148, 181, 194, 285, 652, 912
MroNI GCCGGC 1 cut(s) 269
MroXI GAANNNNTTC 1 cut(s) 61
MseI TTAA 5 cut(s) 21, 207, 318, 461, 798
MslI CAYNNNNRTG 1 cut(s) 192
MspI CCGG 2 cut(s) 270, 345
MspR9I CCNGG 2 cut(s) 345, 846
MunI CAATTG 2 cut(s) 428, 579
Mva1269I GAATGC 1 cut(s) 832
MvaI CCWGG 1 cut(s) 846
MvnI CGCG 1 cut(s) 455
MwoI GCNNNNNNNGC 2 cut(s) 159, 380
NaeI GCCGGC 1 cut(s) 271
NciI CCSGG 1 cut(s) 345
NdeII GATC 1 cut(s) 784
NgoMIV GCCGGC 1 cut(s) 269
NlaIII CATG 3 cut(s) 102, 166, 197
NlaIV GGNNCC 3 cut(s) 169, 808, 913
NmeAIII GCCGAG 1 cut(s) 119
NmuCI GTSAC 1 cut(s) 712
PagI TCATGA 1 cut(s) 193
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PctI GAATGC 1 cut(s) 832
PdiI GCCGGC 1 cut(s) 271
PdmI GAANNNNTTC 1 cut(s) 61
PfeI GAWTC 2 cut(s) 297, 499
PflFI GACNNNGTC 1 cut(s) 305
PkrI GCNGC 2 cut(s) 382, 469
PleI GAGTC 5 cut(s) 131, 342, 383, 437, 809
PpsI GAGTC 5 cut(s) 131, 342, 383, 437, 809
Psp6I CCWGG 1 cut(s) 844
PspFI CCCAGC 1 cut(s) 674
PspGI CCWGG 1 cut(s) 844
PspN4I GGNNCC 3 cut(s) 169, 808, 913
PspPI GGNCC 3 cut(s) 272, 410, 930
PsyI GACNNNGTC 1 cut(s) 305
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
RseI CAYNNNNRTG 1 cut(s) 192
SalI GTCGAC 1 cut(s) 308
SaqAI TTAA 5 cut(s) 21, 207, 318, 461, 798
SatI GCNGC 2 cut(s) 381, 468
Sau3AI GATC 1 cut(s) 784
Sau96I GGNCC 3 cut(s) 272, 410, 930
SchI GAGTC 5 cut(s) 131, 343, 383, 437, 809
ScrFI CCNGG 2 cut(s) 345, 846
SduI GDGCHC 3 cut(s) 511, 599, 914
SfaNI GCATC 2 cut(s) 203, 208
SinI GGWCC 2 cut(s) 410, 930
SmiMI CAYNNNNRTG 1 cut(s) 192
Sse9I AATT 7 cut(s) 16, 247, 283, 428, 513, 579, 667
SsiI CCGC 3 cut(s) 181, 704, 804
SspMI CTAG 4 cut(s) 50, 329, 384, 414
StyD4I CCNGG 2 cut(s) 343, 844
TaaI ACNGT 3 cut(s) 231, 424, 920
TaiI ACGT 2 cut(s) 306, 731
TaqI TCGA 2 cut(s) 300, 309
TaqII GACCGA 1 cut(s) 947
TasI AATT 7 cut(s) 16, 247, 283, 428, 513, 579, 667
TfiI GAWTC 2 cut(s) 297, 499
Tru1I TTAA 5 cut(s) 21, 207, 318, 461, 798
Tru9I TTAA 5 cut(s) 21, 207, 318, 461, 798
TscAI CASTG 3 cut(s) 259, 429, 685
TseFI GTSAC 1 cut(s) 712
TseI GCWGC 2 cut(s) 380, 467
Tsp45I GTSAC 1 cut(s) 712
TspDTI ATGAA 3 cut(s) 182, 564, 639
TspGWI ACGGA 3 cut(s) 382, 827, 875
TspRI CASTG 3 cut(s) 259, 429, 685
Tth111I GACNNNGTC 1 cut(s) 305
VneI GTGCAC 1 cut(s) 595
VpaK11BI GGWCC 2 cut(s) 410, 930
XapI RAATTY 1 cut(s) 16
XcmI CCANNNNNNNNNTGG 1 cut(s) 553
XmiI GTMKAC 1 cut(s) 309
XmnI GAANNNNTTC 1 cut(s) 61
XspI CTAG 4 cut(s) 50, 329, 384, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.