Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002309

Physical Location & Seq

Genomic Coordinates Forward (+)

34152807 .. 34155694

Gene Structure 2888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00411580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2178 bp

ATGATTACGTTTATGGATTCGAAAGAAAAATTGAAGGAGGGGGAGAAGTGCTTGGATCCTCAGCTATGGCATGCCTGTGCTGGAGGGATGGTTCAAATGCCATCGGTGAATGCCAAGGTGTTTTACTTCCCTCAGGGCCATGCCGAACACGCTTGTGGCCCTGTCGATTTCAGGAACTGCCCGAGGATTCCGCCTTACATACTCTGCAGGGTCTCGGCCATCAAGTTCATGGCTGATCCTGAGACTGATGAGGTTTATGCCAAGATTAGACTGGTTCCTTTGAGCTCCAATGAGGCTGGTTATGAGGATAATGGAATTGGGGGAACTAATGGGGCTGATTCGCAAGATAAGCCGGCCTCATTTGCAAAGACGCTGACTCAATTGGACTACTCGGCTGATCCTCCTGTGCAGACAATTCTTGCTAAGGATGTTCATGGCGAGACTTGGAAGTTTAGGCACATATATAGGGGGACGCCGAGGCGGCATCTATTGACCACAGGGTGGAGTACTTTTGTGAACCACAAGAAGCTTGTTGCTGGGGACTCGATTGTGTTTTTGAGGGCAGAGAACGGTGATCTTTGTGTTGGAATTCGGCGAGCCAAGAGGGGAATTGGGGGTGGGCCGGAGTCATCTTCTGGGTGGAATCCGGCGGGTGGGAATTGTGCCATGCCATATGGAGGGTTCTCTTCCTATTTGAGGGAGGATGAGGGGAAACTGATGAGAAATGGCAATGGTAATGGCTCAAATTCAAATGGAAGTCTAATGGGGAAGGGGAAAGTTGGTCCTGAATCGGTTTTGGAAGCTGCAACACTTGCTTCAAATGGACAACCCTTTGAGGTTGTTTACTACCCTCGAGCAAGTACTCCAGAGTTTTGTGTGAAAGCCTCGTTGGTGAAGGCAGCATTGCAGATCCGTTGGTGCCCCGGAATGAGATTTAAGATGGCCTTTGAAACCGAAGATTCTTCCAGGATAAGTTGGTTCATGGGAACCATATCCTCTGTTCATGTTTCTGAGCCTATGCGCTGGCCTGAATCACCTTGGCGGCTTCTCCAGGTTAGCTGGGATGAACCTGATTTGCTTCAGAATGTTAAGCGCGTTAGCCCGTGGCTGGTAGAATTGGTGTCAAACATGCCCGCCATCCATCTGACACCCTTCTCACCACCAAGGAAGAAGATGAGACTGCCACAACACCCCGATTTCCCATTTGAGGGACAACTTCCAATGCCGACATTTTCCGGCAATCACCACCTCCTTGGAACCAGCAGCCCCTTCGGTTGTCTGCCCGACAAAACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTACGGTCTATCCTTATCAGATATCCACCTCAATAAACTGCAATCAGGTCTATTTCCGGCTGGTTTCCCGCCACTTGATCATGTTGCTACTCCCACCAAATTCTCCAATAACACAATGATTCAAAGGCCTACCATGAGCGAGAATGTGTCTTGCTTGTTAACTATGGCACATTCTCCACAGTCTTCAAAGAAACCCGATGATGTAAAGCCACCGCAGCTCATGCTCTTCGGTCAACCAATACTTACTGAGCAGCAAATCTCTTTGAGCTCCTCTGGCGATACTGTCTCACCAGTGCTTACTGGAAATAGTTCGTCAGATGGAAGTGGAGATAAAATGGCAAACCATTCTGATAATTCTGGATCTGCACTTCACCAACAAAGGGTACAAGAGCGATCATCCGGTGAAGGTTTCCATTGGTATAAGGACACTCGGCATGAAGCTGAACCAAATTTGGAAACTGGTCACTGTAAAGTCTTTATGGAATCTGAAGATGTAGGCCGCACTCTTGACTTTTCACAGTTCAAGTCTTATGATGAATTGTATACAAAACTGGCAGACATGTTTGGCATAGAAAATTCCGAGACACTGAACCATGTGCTCTATCGAGATGCTACTGGTGCAGTCAAACACATTGGAGACGAACCATTCAGTGACTTTGTGAAAACGGCAAGGAGATTGACGATTCTAATGGATTCAGGCAGCAACAATGTAGGAATTTGCGGGAGAAGCCGCACATTTAGCTTCCAAGAATCAAAACTCTTAACTACAGAATCATCATTCCCTCAGCAGTTTTGTTGGTCTGGTTTCCATTTCGAGGTTTCTACTTGGTTTTTCATTGCGAAAGTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

725

Amino Acids

80.17

Weight (kDa)

6.69

Isoelectric Point (pI)

51.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	119 - 200	7.2e-18	B3 DNA binding domain
BRWD_AD	PF25313	273 - 374	8.3e-09	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	291 - 374	1.9e-33	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28350 AT2G28350
fragaria_vesca	FvH4_3g32000 FvH4_3g32000 FvH4_6g15960 FvH4_6g15960 FvH4_6g15960
malus_domestica	MD03G1119500.v1.1 MD03G1119700.v1.1 MD04G1096900.v1.1
prunus_persica	Prupe.6G102800_v2.0.a1 Prupe.6G102800_v2.0.a1 Prupe.6G102800_v2.0.a1 Prupe.6G236200_v2.0.a1 Prupe.6G236200_v2.0.a1 Prupe.6G236200_v2.0.a1
pyrus_communis	pycom04g09200 pycom11g11370 pycom12g11700
rosa_chinensis	RchiOBHm_Chr3g0469661 RchiOBHm_Chr5g0058761
rosa_laevigata	RLG00000024330 RLG00000035245
rosa_multiflora	Rmu_sc0000367.1_g000238 Rmu_sc0006483.1_g000023 Rmu_sc0030116.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021650 Rroxscaffold_6G00411580
rosa_rugosa	Rorug03G0103100 Rorug03G0103200 Rorug03G0103300 Rorug05G0317900
rosa_samantha	Rh3AG152700 Rh3BG176500 Rh3CG167500 Rh3DG199100 Rh5AG383600 Rh5BG395500 Rh5CG419200 Rh5DG410900
rosa_wichuraiana	Rw3G014400 Rw5G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	918
AccB7I	CCANNNNNTGG	1 cut(s)	501
AccI	GTMKAC	1 cut(s)	1868
AccII	CGCG	1 cut(s)	1095
AclWI	GGATC	6 cut(s)	50, 63, 230, 392, 904, 1693
AcoI	YGGCCR	1 cut(s)	216
AcsI	RAATTY	6 cut(s)	588, 745, 1424, 1774, 1900, 2040
AcuI	CTGAAG	2 cut(s)	1064, 1833
AcyI	GRCGYC	1 cut(s)	473
AdeI	CACNNNGTG	1 cut(s)	501
AfaI	GTAC	3 cut(s)	508, 862, 1710
AfiI	CCNNNNNNNGG	9 cut(s)	501, 653, 677, 696, 1108, 1207, 1208, 1705, 2140
AflIII	ACRYGT	1 cut(s)	1884
AgsI	TTSAA	8 cut(s)	34, 95, 750, 819, 950, 1448, 1512, 1849
AjnI	CCWGG	3 cut(s)	965, 1050, 1313
AjuI	GAANNNNNNNTTGG	2 cut(s)	872, 904
AleI	CACNNNNGTG	1 cut(s)	153
AloI	GAACNNNNNNTCC	2 cut(s)	75, 107
AluBI	AGCT	9 cut(s)	64, 285, 529, 803, 1059, 1543, 1593, 1766, 2067
AluI	AGCT	9 cut(s)	64, 285, 529, 803, 1059, 1543, 1593, 1766, 2067
Alw21I	GWGCWC	3 cut(s)	287, 1595, 1926
Alw26I	GTCTC	7 cut(s)	217, 236, 434, 1171, 1615, 1901, 1956
AlwI	GGATC	6 cut(s)	50, 63, 230, 392, 904, 1693
AlwNI	CAGNNNCTG	1 cut(s)	177
Ama87I	CYCGRG	2 cut(s)	181, 852
AoxI	GGCC	9 cut(s)	136, 157, 216, 354, 620, 942, 1025, 1451, 1822
ApeKI	GCWGC	6 cut(s)	803, 899, 1263, 1540, 1576, 2025
ApoI	RAATTY	6 cut(s)	588, 745, 1424, 1774, 1900, 2040
Asp700I	GAANNNNTTC	1 cut(s)	1633
AspLEI	GCGC	2 cut(s)	1023, 1095
AspS9I	GGNCC	4 cut(s)	136, 158, 620, 782
AsuC2I	CCSGG	1 cut(s)	924
AsuHPI	GGTGA	9 cut(s)	118, 584, 904, 1026, 1149, 1235, 1605, 1688, 1739
AsuII	TTCGAA	1 cut(s)	20
AvaI	CYCGRG	2 cut(s)	181, 852
AvaII	GGWCC	1 cut(s)	782
AxyI	CCTNAGG	1 cut(s)	132
BaeGI	GKGCMC	1 cut(s)	923
BamHI	GGATCC	1 cut(s)	55
BanI	GGYRCC	1 cut(s)	918
BanII	GRGCYC	2 cut(s)	287, 1595
BbsI	GAAGAC	1 cut(s)	1500
Bbv12I	GWGCWC	3 cut(s)	287, 1595, 1926
BbvCI	CCTCAGC	2 cut(s)	60, 2109
BbvI	GCAGC	6 cut(s)	790, 911, 1275, 1552, 1588, 2037
BccI	CCATC	7 cut(s)	82, 109, 227, 934, 1145, 1149, 1637
BceAI	ACGGC	1 cut(s)	2007
BcgI	CGANNNNNNTGC	2 cut(s)	1252, 1286
BciT130I	CCWGG	3 cut(s)	967, 1052, 1315
BclI	TGATCA	1 cut(s)	1402
BcnI	CCSGG	1 cut(s)	924
BcoDI	GTCTC	7 cut(s)	217, 236, 434, 1171, 1615, 1901, 1956
BfmI	CTRYAG	2 cut(s)	205, 2091
BglI	GCCNNNNNGGC	1 cut(s)	481
BmcAI	AGTACT	2 cut(s)	508, 862
Bme1390I	CCNGG	4 cut(s)	924, 967, 1052, 1315
Bme18I	GGWCC	1 cut(s)	782
BmeT110I	CYCGRG	2 cut(s)	181, 852
BmgT120I	GGNCC	4 cut(s)	136, 158, 620, 782
BmiI	GGNNCC	6 cut(s)	57, 276, 920, 988, 1258, 1312
BmrFI	CCNGG	4 cut(s)	924, 967, 1052, 1315
BmsI	GCATC	2 cut(s)	493, 1924
BpiI	GAAGAC	1 cut(s)	1500
BpmI	CTGGAG	3 cut(s)	102, 849, 1034
Bpu10I	CCTNAGC	3 cut(s)	60, 423, 2109
Bpu14I	TTCGAA	1 cut(s)	20
BpuMI	CCSGG	1 cut(s)	924
BsaHI	GRCGYC	1 cut(s)	473
BsaI	GGTCTC	1 cut(s)	217
BsaJI	CCNNGG	8 cut(s)	114, 182, 476, 922, 1037, 1103, 1163, 1252
BsaWI	WCCGGW	1 cut(s)	1724
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bsc4I	CCNNNNNNNGG	9 cut(s)	501, 653, 677, 696, 1108, 1207, 1208, 1705, 2140
Bse118I	RCCGGY	1 cut(s)	352
Bse1I	ACTGG	6 cut(s)	276, 1616, 1630, 1789, 1881, 1945
Bse21I	CCTNAGG	1 cut(s)	132
Bse3DI	GCAATG	3 cut(s)	736, 902, 2160
BseBI	CCWGG	3 cut(s)	967, 1052, 1315
BseDI	CCNNGG	8 cut(s)	114, 182, 476, 922, 1037, 1103, 1163, 1252
BseGI	GGATG	6 cut(s)	93, 433, 709, 1069, 1137, 1721
BseLI	CCNNNNNNNGG	9 cut(s)	501, 653, 677, 696, 1108, 1207, 1208, 1705, 2140
BseMI	GCAATG	3 cut(s)	736, 902, 2160
BseMII	CTCAG	6 cut(s)	74, 146, 231, 1002, 1563, 2123
BseNI	ACTGG	6 cut(s)	276, 1616, 1630, 1789, 1881, 1945
BseRI	GAGGAG	1 cut(s)	1585
BseSI	GKGCMC	1 cut(s)	923
BseXI	GCAGC	6 cut(s)	790, 911, 1275, 1552, 1588, 2037
BseYI	CCCAGC	2 cut(s)	536, 1059
BsgI	GTGCAG	3 cut(s)	428, 1674, 1965
Bsh1236I	CGCG	1 cut(s)	1095
BshFI	GGCC	9 cut(s)	138, 159, 218, 356, 622, 944, 1027, 1453, 1824
BshNI	GGYRCC	1 cut(s)	918
BsiHKAI	GWGCWC	3 cut(s)	287, 1595, 1926
BsiHKCI	CYCGRG	2 cut(s)	181, 852
BsiSI	CCGG	7 cut(s)	353, 623, 647, 924, 1236, 1382, 1725
BslFI	GGGAC	3 cut(s)	484, 554, 1224
BslI	CCNNNNNNNGG	9 cut(s)	501, 653, 677, 696, 1108, 1207, 1208, 1705, 2140
BsmAI	GTCTC	7 cut(s)	217, 236, 434, 1171, 1615, 1901, 1956
BsmBI	CGTCTC	1 cut(s)	1956
BsmFI	GGGAC	3 cut(s)	484, 554, 1224
BsmI	GAATGC	1 cut(s)	115
BsnI	GGCC	9 cut(s)	138, 159, 218, 356, 622, 944, 1027, 1453, 1824
Bso31I	GGTCTC	1 cut(s)	217
BsoBI	CYCGRG	2 cut(s)	181, 852
Bsp119I	TTCGAA	1 cut(s)	20
Bsp1286I	GDGCHC	4 cut(s)	287, 923, 1595, 1926
Bsp143I	GATC	8 cut(s)	55, 235, 397, 574, 909, 1402, 1685, 1718
BspANI	GGCC	9 cut(s)	138, 159, 218, 356, 622, 944, 1027, 1453, 1824
BspCNI	CTCAG	6 cut(s)	73, 145, 232, 1003, 1564, 2122
BspFNI	CGCG	1 cut(s)	1095
BspLI	GGNNCC	6 cut(s)	57, 276, 920, 988, 1258, 1312
BspMAI	CTGCAG	1 cut(s)	209
BspPI	GGATC	6 cut(s)	50, 63, 230, 392, 904, 1693
BspQI	GCTCTTC	1 cut(s)	1556
BspT104I	TTCGAA	1 cut(s)	20
BspT107I	GGYRCC	1 cut(s)	918
BspTNI	GGTCTC	1 cut(s)	217
BsrDI	GCAATG	3 cut(s)	736, 902, 2160
BsrFI	RCCGGY	1 cut(s)	352
BsrI	ACTGG	6 cut(s)	276, 1616, 1630, 1789, 1881, 1945
BssAI	RCCGGY	1 cut(s)	352
BssECI	CCNNGG	8 cut(s)	114, 182, 476, 922, 1037, 1103, 1163, 1252
BssMI	GATC	8 cut(s)	55, 235, 397, 574, 909, 1402, 1685, 1718
BssNAI	GTATAC	1 cut(s)	1869
BssNI	GRCGYC	1 cut(s)	473
BssT1I	CCWWGG	4 cut(s)	114, 1037, 1163, 1252
Bst1107I	GTATAC	1 cut(s)	1869
Bst2UI	CCWGG	3 cut(s)	967, 1052, 1315
Bst4CI	ACNGT	6 cut(s)	572, 1331, 1506, 1609, 1793, 1845
Bst6I	CTCTTC	2 cut(s)	691, 1556
BstACI	GRCGYC	1 cut(s)	473
BstAPI	GCANNNNNTGC	2 cut(s)	812, 1546
BstBI	TTCGAA	1 cut(s)	20
BstC8I	GCNNGC	8 cut(s)	72, 354, 597, 1025, 1134, 1300, 1304, 1320
BstDEI	CTNAG	7 cut(s)	60, 132, 240, 423, 1011, 1572, 2109
BstDSI	CCRYGG	1 cut(s)	1103
BstENI	CCTNNNNNAGG	1 cut(s)	694
BstF5I	GGATG	6 cut(s)	93, 433, 709, 1069, 1137, 1721
BstFNI	CGCG	1 cut(s)	1095
BstHHI	GCGC	2 cut(s)	1023, 1095
BstKTI	GATC	8 cut(s)	58, 238, 400, 577, 912, 1405, 1688, 1721
BstMAI	GTCTC	7 cut(s)	217, 236, 434, 1171, 1615, 1901, 1956
BstMBI	GATC	8 cut(s)	55, 235, 397, 574, 909, 1402, 1685, 1718
BstNI	CCWGG	3 cut(s)	967, 1052, 1315
BstNSI	RCATGY	5 cut(s)	74, 1132, 1306, 1322, 1888
BstSCI	CCNGG	4 cut(s)	922, 965, 1050, 1313
BstSFI	CTRYAG	2 cut(s)	205, 2091
BstSLI	GKGCMC	1 cut(s)	923
BstUI	CGCG	1 cut(s)	1095
BstV1I	GCAGC	6 cut(s)	790, 911, 1275, 1552, 1588, 2037
BstV2I	GAAGAC	1 cut(s)	1500
BstX2I	RGATCY	3 cut(s)	55, 909, 1685
BstXI	CCANNNNNNTGG	1 cut(s)	1253
BstYI	RGATCY	3 cut(s)	55, 909, 1685
BstZ17I	GTATAC	1 cut(s)	1869
Bsu36I	CCTNAGG	1 cut(s)	132
BsuRI	GGCC	9 cut(s)	138, 159, 218, 356, 622, 944, 1027, 1453, 1824
BtgI	CCRYGG	1 cut(s)	1103
BtsCI	GGATG	6 cut(s)	93, 433, 709, 1069, 1137, 1721
BtsIMutI	CAGTG	4 cut(s)	1623, 1789, 1910, 1981
Cac8I	GCNNGC	8 cut(s)	72, 354, 597, 1025, 1134, 1300, 1304, 1320
CaiI	CAGNNNCTG	1 cut(s)	177
CfoI	GCGC	2 cut(s)	1023, 1095
Cfr10I	RCCGGY	1 cut(s)	352
Cfr13I	GGNCC	4 cut(s)	136, 158, 620, 782
CseI	GACGC	2 cut(s)	379, 481
Csp6I	GTAC	3 cut(s)	507, 861, 1709
CviQI	GTAC	3 cut(s)	507, 861, 1709
DdeI	CTNAG	7 cut(s)	60, 132, 240, 423, 1011, 1572, 2109
DpnI	GATC	8 cut(s)	57, 237, 399, 576, 911, 1404, 1687, 1720
DpnII	GATC	8 cut(s)	55, 235, 397, 574, 909, 1402, 1685, 1718
DraIII	CACNNNGTG	1 cut(s)	501
EaeI	YGGCCR	1 cut(s)	216
Eam1104I	CTCTTC	2 cut(s)	691, 1556
EarI	CTCTTC	2 cut(s)	691, 1556
EciI	GGCGGA	1 cut(s)	180
Ecl136II	GAGCTC	2 cut(s)	285, 1593
Eco130I	CCWWGG	4 cut(s)	114, 1037, 1163, 1252
Eco147I	AGGCCT	1 cut(s)	1453
Eco24I	GRGCYC	2 cut(s)	287, 1595
Eco31I	GGTCTC	1 cut(s)	217
Eco32I	GATATC	1 cut(s)	1348
Eco47I	GGWCC	1 cut(s)	782
Eco53kI	GAGCTC	2 cut(s)	285, 1593
Eco57I	CTGAAG	2 cut(s)	1064, 1833
Eco81I	CCTNAGG	1 cut(s)	132
Eco88I	CYCGRG	2 cut(s)	181, 852
EcoICRI	GAGCTC	2 cut(s)	285, 1593
EcoNI	CCTNNNNNAGG	1 cut(s)	694
EcoRI	GAATTC	1 cut(s)	588
EcoRII	CCWGG	3 cut(s)	965, 1050, 1313
EcoRV	GATATC	1 cut(s)	1348
EcoT14I	CCWWGG	4 cut(s)	114, 1037, 1163, 1252
EcoT38I	GRGCYC	2 cut(s)	287, 1595
ErhI	CCWWGG	4 cut(s)	114, 1037, 1163, 1252
Esp3I	CGTCTC	1 cut(s)	1956
FalI	AAGNNNNNCTT	2 cut(s)	929, 961
FaqI	GGGAC	3 cut(s)	484, 554, 1224
FauI	CCCGC	4 cut(s)	643, 1141, 1401, 2039
FauNDI	CATATG	1 cut(s)	673
FbaI	TGATCA	1 cut(s)	1402
FblI	GTMKAC	1 cut(s)	1868
FokI	GGATG	6 cut(s)	100, 440, 716, 1076, 1124, 1708
FriOI	GRGCYC	2 cut(s)	287, 1595
GlaI	GCGC	2 cut(s)	1022, 1094
GsaI	CCCAGC	2 cut(s)	540, 1063
GsuI	CTGGAG	3 cut(s)	102, 849, 1034
HaeIII	GGCC	9 cut(s)	138, 159, 218, 356, 622, 944, 1027, 1453, 1824
HapII	CCGG	7 cut(s)	353, 623, 647, 924, 1236, 1382, 1725
HgaI	GACGC	2 cut(s)	379, 481
HhaI	GCGC	2 cut(s)	1023, 1095
Hin1I	GRCGYC	1 cut(s)	473
Hin6I	GCGC	2 cut(s)	1021, 1093
HinP1I	GCGC	2 cut(s)	1021, 1093
HincII	GTYRAC	2 cut(s)	1485, 1559
HindII	GTYRAC	2 cut(s)	1485, 1559
HindIII	AAGCTT	1 cut(s)	527
HpaI	GTTAAC	1 cut(s)	1485
HpaII	CCGG	7 cut(s)	353, 623, 647, 924, 1236, 1382, 1725
HphI	GGTGA	9 cut(s)	118, 584, 904, 1026, 1149, 1235, 1605, 1688, 1739
Hpy166II	GTNNAC	5 cut(s)	517, 844, 1485, 1559, 1869
Hpy188I	TCNGA	8 cut(s)	1012, 1083, 1146, 1345, 1642, 1675, 1813, 1906
Hpy188III	TCNNGA	7 cut(s)	172, 239, 785, 866, 1683, 1832, 1931
Hpy8I	GTNNAC	5 cut(s)	517, 844, 1485, 1559, 1869
HpyAV	CCTTC	6 cut(s)	28, 763, 889, 1162, 1279, 1724
HpyCH4III	ACNGT	6 cut(s)	572, 1331, 1506, 1609, 1793, 1845
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	9 cut(s)	207, 365, 409, 806, 907, 1306, 1366, 1691, 1946
HpyF3I	CTNAG	7 cut(s)	60, 132, 240, 423, 1011, 1572, 2109
HpySE526I	ACGT	1 cut(s)	8
Hsp92I	GRCGYC	1 cut(s)	473
HspAI	GCGC	2 cut(s)	1021, 1093
KroI	GCCGGC	1 cut(s)	352
KroNI	GCCGGC	1 cut(s)	354
Ksp22I	TGATCA	1 cut(s)	1402
KspAI	GTTAAC	1 cut(s)	1485
Kzo9I	GATC	8 cut(s)	55, 235, 397, 574, 909, 1402, 1685, 1718
LguI	GCTCTTC	1 cut(s)	1556
LmnI	GCTCC	3 cut(s)	290, 1310, 1598
Lsp1109I	GCAGC	6 cut(s)	790, 911, 1275, 1552, 1588, 2037
LweI	GCATC	2 cut(s)	493, 1924
MaeII	ACGT	1 cut(s)	8
MaeIII	GTNAC	2 cut(s)	1787, 1976
MalI	GATC	8 cut(s)	57, 237, 399, 576, 911, 1404, 1687, 1720
MboI	GATC	8 cut(s)	55, 235, 397, 574, 909, 1402, 1685, 1718
MboII	GAAGA	9 cut(s)	624, 678, 954, 968, 1180, 1183, 1500, 1543, 1826
MfeI	CAATTG	1 cut(s)	380
MflI	RGATCY	3 cut(s)	55, 909, 1685
MhlI	GDGCHC	4 cut(s)	287, 923, 1595, 1926
MlyI	GAGTC	3 cut(s)	370, 536, 635
MmeI	TCCRAC	1 cut(s)	565
MroNI	GCCGGC	1 cut(s)	352
MroXI	GAANNNNTTC	1 cut(s)	1633
MseI	TTAA	4 cut(s)	936, 1089, 1484, 2087
MslI	CAYNNNNRTG	2 cut(s)	75, 153
MspI	CCGG	7 cut(s)	353, 623, 647, 924, 1236, 1382, 1725
MspR9I	CCNGG	4 cut(s)	924, 967, 1052, 1315
MunI	CAATTG	1 cut(s)	380
Mva1269I	GAATGC	1 cut(s)	115
MvaI	CCWGG	3 cut(s)	967, 1052, 1315
MvnI	CGCG	1 cut(s)	1095
NaeI	GCCGGC	1 cut(s)	354
NciI	CCSGG	1 cut(s)	924
NdeI	CATATG	1 cut(s)	673
NdeII	GATC	8 cut(s)	55, 235, 397, 574, 909, 1402, 1685, 1718
NgoMIV	GCCGGC	1 cut(s)	352
NlaIV	GGNNCC	6 cut(s)	57, 276, 920, 988, 1258, 1312
NmeAIII	GCCGAG	4 cut(s)	194, 371, 501, 1735
NmuCI	GTSAC	2 cut(s)	1787, 1976
NspI	RCATGY	5 cut(s)	74, 1132, 1306, 1322, 1888
NspV	TTCGAA	1 cut(s)	20
OliI	CACNNNNGTG	1 cut(s)	153
PaeI	GCATGC	3 cut(s)	74, 1306, 1322
PaeR7I	CTCGAG	1 cut(s)	852
PceI	AGGCCT	1 cut(s)	1453
PciI	ACATGT	1 cut(s)	1884
PciSI	GCTCTTC	1 cut(s)	1556
PctI	GAATGC	1 cut(s)	115
PdiI	GCCGGC	1 cut(s)	354
PdmI	GAANNNNTTC	1 cut(s)	1633
PflMI	CCANNNNNTGG	1 cut(s)	501
PfoI	TCCNGGA	1 cut(s)	965
PleI	GAGTC	3 cut(s)	370, 536, 634
PpsI	GAGTC	3 cut(s)	370, 536, 634
PscI	ACATGT	1 cut(s)	1884
Psp124BI	GAGCTC	2 cut(s)	287, 1595
Psp6I	CCWGG	3 cut(s)	965, 1050, 1313
PspFI	CCCAGC	2 cut(s)	536, 1059
PspGI	CCWGG	3 cut(s)	965, 1050, 1313
PspN4I	GGNNCC	6 cut(s)	57, 276, 920, 988, 1258, 1312
PspPI	GGNCC	4 cut(s)	136, 158, 620, 782
PspXI	VCTCGAGB	1 cut(s)	852
PstI	CTGCAG	1 cut(s)	209
PstNI	CAGNNNCTG	1 cut(s)	177
PsuI	RGATCY	3 cut(s)	55, 909, 1685
RsaI	GTAC	3 cut(s)	508, 862, 1710
RsaNI	GTAC	3 cut(s)	507, 861, 1709
RseI	CAYNNNNRTG	2 cut(s)	75, 153
SacI	GAGCTC	2 cut(s)	287, 1595
SapI	GCTCTTC	1 cut(s)	1556
SaqAI	TTAA	4 cut(s)	936, 1089, 1484, 2087
Sau3AI	GATC	8 cut(s)	55, 235, 397, 574, 909, 1402, 1685, 1718
Sau96I	GGNCC	4 cut(s)	136, 158, 620, 782
ScaI	AGTACT	2 cut(s)	508, 862
SchI	GAGTC	3 cut(s)	370, 536, 635
ScrFI	CCNGG	4 cut(s)	924, 967, 1052, 1315
SduI	GDGCHC	4 cut(s)	287, 923, 1595, 1926
SfaNI	GCATC	2 cut(s)	493, 1924
SfcI	CTRYAG	2 cut(s)	205, 2091
Sfr274I	CTCGAG	1 cut(s)	852
SfuI	TTCGAA	1 cut(s)	20
SinI	GGWCC	1 cut(s)	782
SlaI	CTCGAG	1 cut(s)	852
SmiMI	CAYNNNNRTG	2 cut(s)	75, 153
SmlI	CTYRAG	1 cut(s)	852
SmoI	CTYRAG	1 cut(s)	852
SphI	GCATGC	3 cut(s)	74, 1306, 1322
SseBI	AGGCCT	1 cut(s)	1453
SstI	GAGCTC	2 cut(s)	287, 1595
StuI	AGGCCT	1 cut(s)	1453
StyD4I	CCNGG	4 cut(s)	922, 965, 1050, 1313
StyI	CCWWGG	4 cut(s)	114, 1037, 1163, 1252
TaaI	ACNGT	6 cut(s)	572, 1331, 1506, 1609, 1793, 1845
TaiI	ACGT	1 cut(s)	11
TaqI	TCGA	6 cut(s)	20, 165, 545, 853, 1930, 2139
TaqII	GACCGA	1 cut(s)	1544
TatI	WGTACW	2 cut(s)	506, 860
TauI	GCSGC	4 cut(s)	484, 1045, 1827, 2058
Tru1I	TTAA	4 cut(s)	936, 1089, 1484, 2087
Tru9I	TTAA	4 cut(s)	936, 1089, 1484, 2087
TscAI	CASTG	4 cut(s)	1623, 1796, 1917, 1981
TseFI	GTSAC	2 cut(s)	1787, 1976
TseI	GCWGC	6 cut(s)	803, 899, 1263, 1540, 1576, 2025
Tsp45I	GTSAC	2 cut(s)	1787, 1976
TspDTI	ATGAA	8 cut(s)	217, 422, 970, 992, 1080, 1776, 1875, 2149
TspGWI	ACGGA	1 cut(s)	902
TspRI	CASTG	4 cut(s)	1623, 1796, 1917, 1981
Van91I	CCANNNNNTGG	1 cut(s)	501
VpaK11BI	GGWCC	1 cut(s)	782
XagI	CCTNNNNNAGG	1 cut(s)	694
XapI	RAATTY	6 cut(s)	588, 745, 1424, 1774, 1900, 2040
XceI	RCATGY	5 cut(s)	74, 1132, 1306, 1322, 1888
XcmI	CCANNNNNNNNNTGG	2 cut(s)	226, 268
XhoI	CTCGAG	1 cut(s)	852
XmiI	GTMKAC	1 cut(s)	1868
XmnI	GAANNNNTTC	1 cut(s)	1633
ZrmI	AGTACT	2 cut(s)	508, 862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.