Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0007579

Physical Location & Seq

Genomic Coordinates Reverse (-)

13936383 .. 13936811

Gene Structure 429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1137400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTATGTCCTCTATCTAGCAACAATAAGCCCATCAAAAGGAGGTTGTCCGAGCCCAAGCCTATTGTCCAAATCTACCAGCTACAAATCCGGGCCCGGCTCTCAAAGCCCAACCTCGACCAACCCCAAACTTGTCGTCACCAACGAGGTCCAGAAGGTCTTCAAAAGCTTTGATGCCAACAACAATGGCAAGATCTCTGTCAACGAGCTCGACAACGACCTCAAGACCCTCGGCTCCAACGTCTCCGGTGACAAGCTTAAGCGCGTCATGGTCGATCTTGACACTGACAACGATGGCTTCATTTGCCTCGACGAGTTCAACACCTTCTGGGTCTCCGGCTCCAAGGATGGCGGCGCCGCTGAGCTCAAAGACGCATTCGATCTCTACGACCAGAACCACGGCCTCGATCCCTTCTTCTTTCCACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

143

Amino Acids

15.38

Weight (kDa)

4.7

Isoelectric Point (pI)

27.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	49 - 75	8.4e-06	EF hand domain
EF-hand_7	PF13499	49 - 109	1.2e-11	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18210 AT1G18210 AT1G73630
fragaria_vesca	FvH4_5g17240
malus_domestica	MD03G1137400.v1.1 MD06G1216800.v1.1 MD06G1231000.v1.1 MD13G1184700.v1.1
prunus_persica	Prupe.1G192900_v2.0.a1 Prupe.3G199600_v2.0.a1 Prupe.5G232300_v2.0.a1 Prupe.7G023700_v2.0.a1
pyrus_communis	pycom14g19650 pycom14g19660
rosa_chinensis	RchiOBHm_Chr7g0178551
rosa_laevigata	RLG00000005438
rosa_multiflora	Rmu_co8293555.1_g000001 Rmu_sc0012505.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274820
rosa_rugosa	Rorug06G0417900
rosa_samantha	Rh7AG016500 Rh7BG016000 Rh7DG016600
rosa_wichuraiana	Rw7G001310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	353
AccII	CGCG	1 cut(s)	264
AciI	CCGC	2 cut(s)	351, 357
AclWI	GGATC	1 cut(s)	401
AcyI	GRCGYC	1 cut(s)	354
AfiI	CCNNNNNNNGG	1 cut(s)	38
AflII	CTTAAG	1 cut(s)	257
AgsI	TTSAA	2 cut(s)	163, 319
AluBI	AGCT	5 cut(s)	81, 168, 208, 256, 364
AluI	AGCT	5 cut(s)	81, 168, 208, 256, 364
Alw21I	GWGCWC	2 cut(s)	210, 366
Alw26I	GTCTC	2 cut(s)	247, 337
AlwI	GGATC	1 cut(s)	401
AoxI	GGCC	2 cut(s)	92, 400
ApaI	GGGCCC	1 cut(s)	96
ArsI	GACNNNNNNTTYG	2 cut(s)	120, 152
Asp700I	GAANNNNTTC	1 cut(s)	158
AspLEI	GCGC	2 cut(s)	264, 356
AspS9I	GGNCC	3 cut(s)	92, 93, 148
AsuC2I	CCSGG	2 cut(s)	91, 96
AsuHPI	GGTGA	2 cut(s)	130, 260
AvaII	GGWCC	1 cut(s)	148
BaeGI	GKGCMC	1 cut(s)	96
BanI	GGYRCC	1 cut(s)	353
BanII	GRGCYC	4 cut(s)	56, 96, 210, 366
BbsI	GAAGAC	1 cut(s)	151
Bbv12I	GWGCWC	2 cut(s)	210, 366
BccI	CCATC	3 cut(s)	40, 287, 341
BceAI	ACGGC	1 cut(s)	415
BcnI	CCSGG	2 cut(s)	91, 96
BcoDI	GTCTC	2 cut(s)	247, 337
BfaI	CTAG	1 cut(s)	17
BfoI	RGCGCY	1 cut(s)	357
BfrI	CTTAAG	1 cut(s)	257
BglII	AGATCT	1 cut(s)	192
BisI	GCNGC	2 cut(s)	352, 357
BlpI	GCTNAGC	1 cut(s)	360
BlsI	GCNGC	2 cut(s)	353, 358
Bme1390I	CCNGG	2 cut(s)	91, 96
Bme18I	GGWCC	1 cut(s)	148
BmgT120I	GGNCC	3 cut(s)	92, 93, 148
BmiI	GGNNCC	4 cut(s)	94, 235, 340, 355
BmrFI	CCNGG	2 cut(s)	91, 96
BmsI	GCATC	1 cut(s)	163
BpiI	GAAGAC	1 cut(s)	151
Bpu1102I	GCTNAGC	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	206
BpuMI	CCSGG	2 cut(s)	91, 96
BsaHI	GRCGYC	1 cut(s)	354
BsaI	GGTCTC	1 cut(s)	337
BsaJI	CCNNGG	3 cut(s)	229, 342, 397
BsaWI	WCCGGW	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
BseDI	CCNNGG	3 cut(s)	229, 342, 397
BseGI	GGATG	1 cut(s)	352
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMII	CTCAG	1 cut(s)	351
BseSI	GKGCMC	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	264
BshFI	GGCC	2 cut(s)	94, 402
BshNI	GGYRCC	1 cut(s)	353
BsiHKAI	GWGCWC	2 cut(s)	210, 366
BsiSI	CCGG	4 cut(s)	90, 96, 246, 336
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmAI	GTCTC	2 cut(s)	247, 337
BsmBI	CGTCTC	1 cut(s)	247
BsmI	GAATGC	1 cut(s)	374
BsnI	GGCC	2 cut(s)	94, 402
Bso31I	GGTCTC	1 cut(s)	337
Bsp120I	GGGCCC	1 cut(s)	92
Bsp1286I	GDGCHC	4 cut(s)	56, 96, 210, 366
Bsp143I	GATC	4 cut(s)	192, 274, 379, 406
Bsp1720I	GCTNAGC	1 cut(s)	360
BspACI	CCGC	2 cut(s)	351, 357
BspANI	GGCC	2 cut(s)	94, 402
BspCNI	CTCAG	1 cut(s)	352
BspFNI	CGCG	1 cut(s)	264
BspLI	GGNNCC	4 cut(s)	94, 235, 340, 355
BspPI	GGATC	1 cut(s)	401
BspT107I	GGYRCC	1 cut(s)	353
BspTI	CTTAAG	1 cut(s)	257
BspTNI	GGTCTC	1 cut(s)	337
BssECI	CCNNGG	3 cut(s)	229, 342, 397
BssMI	GATC	4 cut(s)	192, 274, 379, 406
BssNI	GRCGYC	1 cut(s)	354
BssT1I	CCWWGG	1 cut(s)	342
BstACI	GRCGYC	1 cut(s)	354
BstAFI	CTTAAG	1 cut(s)	257
BstDEI	CTNAG	1 cut(s)	360
BstDSI	CCRYGG	1 cut(s)	397
BstF5I	GGATG	1 cut(s)	352
BstFNI	CGCG	1 cut(s)	264
BstH2I	RGCGCY	1 cut(s)	357
BstHHI	GCGC	2 cut(s)	264, 356
BstKTI	GATC	4 cut(s)	195, 277, 382, 409
BstMAI	GTCTC	2 cut(s)	247, 337
BstMBI	GATC	4 cut(s)	192, 274, 379, 406
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 303
BstSCI	CCNGG	2 cut(s)	89, 94
BstSLI	GKGCMC	1 cut(s)	96
BstUI	CGCG	1 cut(s)	264
BstV2I	GAAGAC	1 cut(s)	151
BstX2I	RGATCY	1 cut(s)	192
BstYI	RGATCY	1 cut(s)	192
BsuRI	GGCC	2 cut(s)	94, 402
BtgI	CCRYGG	1 cut(s)	397
BtsCI	GGATG	1 cut(s)	352
BtsIMutI	CAGTG	1 cut(s)	282
CfoI	GCGC	2 cut(s)	264, 356
Cfr13I	GGNCC	3 cut(s)	92, 93, 148
CseI	GACGC	2 cut(s)	253, 380
CviAII	CATG	1 cut(s)	268
DdeI	CTNAG	1 cut(s)	360
DinI	GGCGCC	1 cut(s)	355
DpnI	GATC	4 cut(s)	194, 276, 381, 408
DpnII	GATC	4 cut(s)	192, 274, 379, 406
Ecl136II	GAGCTC	2 cut(s)	208, 364
Eco130I	CCWWGG	1 cut(s)	342
Eco24I	GRGCYC	4 cut(s)	56, 96, 210, 366
Eco31I	GGTCTC	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	148
Eco53kI	GAGCTC	2 cut(s)	208, 364
EcoICRI	GAGCTC	2 cut(s)	208, 364
EcoT14I	CCWWGG	1 cut(s)	342
EcoT38I	GRGCYC	4 cut(s)	56, 96, 210, 366
EgeI	GGCGCC	1 cut(s)	355
EheI	GGCGCC	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	342
Esp3I	CGTCTC	1 cut(s)	247
FaeI	CATG	1 cut(s)	271
FaiI	YATR	2 cut(s)	6, 269
FatI	CATG	1 cut(s)	267
Fnu4HI	GCNGC	2 cut(s)	352, 357
FokI	GGATG	1 cut(s)	359
FriOI	GRGCYC	4 cut(s)	56, 96, 210, 366
Fsp4HI	GCNGC	2 cut(s)	352, 357
FspBI	CTAG	1 cut(s)	17
GlaI	GCGC	2 cut(s)	263, 355
GluI	GCNGC	2 cut(s)	352, 357
HaeII	RGCGCY	1 cut(s)	357
HaeIII	GGCC	2 cut(s)	94, 402
HapII	CCGG	4 cut(s)	90, 96, 246, 336
HgaI	GACGC	2 cut(s)	253, 380
HhaI	GCGC	2 cut(s)	264, 356
Hin1I	GRCGYC	1 cut(s)	354
Hin1II	CATG	1 cut(s)	271
Hin6I	GCGC	2 cut(s)	262, 354
HinP1I	GCGC	2 cut(s)	262, 354
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HindIII	AAGCTT	2 cut(s)	166, 254
HpaII	CCGG	4 cut(s)	90, 96, 246, 336
HphI	GGTGA	2 cut(s)	130, 260
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	1 cut(s)	51
Hpy188III	TCNNGA	3 cut(s)	151, 223, 278
Hpy8I	GTNNAC	1 cut(s)	202
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	3 cut(s)	148, 334, 421
HpyCH4IV	ACGT	1 cut(s)	240
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 303
HpyF3I	CTNAG	1 cut(s)	360
HpySE526I	ACGT	1 cut(s)	240
Hsp92I	GRCGYC	1 cut(s)	354
Hsp92II	CATG	1 cut(s)	271
HspAI	GCGC	2 cut(s)	262, 354
KasI	GGCGCC	1 cut(s)	353
Kzo9I	GATC	4 cut(s)	192, 274, 379, 406
LmnI	GCTCC	2 cut(s)	239, 344
LpnPI	CCDG	8 cut(s)	91, 103, 109, 164, 259, 313, 349, 404
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	17
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	2 cut(s)	136, 248
MalI	GATC	4 cut(s)	194, 276, 381, 408
MboI	GATC	4 cut(s)	192, 274, 379, 406
MboII	GAAGA	2 cut(s)	151, 406
MflI	RGATCY	1 cut(s)	192
MhlI	GDGCHC	4 cut(s)	56, 96, 210, 366
Mly113I	GGCGCC	1 cut(s)	354
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	8 cut(s)	20, 35, 124, 139, 230, 239, 317, 413
MroXI	GAANNNNTTC	1 cut(s)	158
MseI	TTAA	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	359
MspCI	CTTAAG	1 cut(s)	257
MspI	CCGG	4 cut(s)	90, 96, 246, 336
MspR9I	CCNGG	2 cut(s)	91, 96
Mva1269I	GAATGC	1 cut(s)	374
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	2 cut(s)	105, 303
NarI	GGCGCC	1 cut(s)	354
NciI	CCSGG	2 cut(s)	91, 96
NdeII	GATC	4 cut(s)	192, 274, 379, 406
NlaIII	CATG	1 cut(s)	271
NlaIV	GGNNCC	4 cut(s)	94, 235, 340, 355
NmeAIII	GCCGAG	1 cut(s)	210
NmuCI	GTSAC	2 cut(s)	136, 248
PcsI	WCGNNNNNNNCGW	3 cut(s)	141, 237, 384
PctI	GAATGC	1 cut(s)	374
PdmI	GAANNNNTTC	1 cut(s)	158
PkrI	GCNGC	2 cut(s)	353, 358
PluTI	GGCGCC	1 cut(s)	357
Psp124BI	GAGCTC	2 cut(s)	210, 366
PspN4I	GGNNCC	4 cut(s)	94, 235, 340, 355
PspOMI	GGGCCC	1 cut(s)	92
PspPI	GGNCC	3 cut(s)	92, 93, 148
PsuI	RGATCY	1 cut(s)	192
SacI	GAGCTC	2 cut(s)	210, 366
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	2 cut(s)	352, 357
Sau3AI	GATC	4 cut(s)	192, 274, 379, 406
Sau96I	GGNCC	3 cut(s)	92, 93, 148
ScrFI	CCNGG	2 cut(s)	91, 96
SduI	GDGCHC	4 cut(s)	56, 96, 210, 366
SfaNI	GCATC	1 cut(s)	163
SfoI	GGCGCC	1 cut(s)	355
SinI	GGWCC	1 cut(s)	148
SmlI	CTYRAG	2 cut(s)	221, 257
SmoI	CTYRAG	2 cut(s)	221, 257
SsiI	CCGC	2 cut(s)	351, 357
SspDI	GGCGCC	1 cut(s)	353
SspMI	CTAG	1 cut(s)	17
SstI	GAGCTC	2 cut(s)	210, 366
StyD4I	CCNGG	2 cut(s)	89, 94
StyI	CCWWGG	1 cut(s)	342
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	6 cut(s)	116, 210, 273, 309, 378, 405
TauI	GCSGC	2 cut(s)	354, 359
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	289
TseFI	GTSAC	2 cut(s)	136, 248
Tsp45I	GTSAC	2 cut(s)	136, 248
TspDTI	ATGAA	1 cut(s)	289
TspRI	CASTG	1 cut(s)	289
Vha464I	CTTAAG	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	148
XmnI	GAANNNNTTC	1 cut(s)	158
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.