Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007579

Physical Location & Seq

Genomic Coordinates Forward (+)

18057111 .. 18059417

Gene Structure 2307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G192900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCAACCAACGGAACCCCAAGCCCAGCCCAAGCCCCAAAATCCGTCGACGCCAAGCCAGTTGTCACCGACGAGGTTCAGAGAGTCTTCAAAAGCTTCGACGCCAATGGTGACGGCAAGATCTCCGTCTCCGAGCTCGGCAACGTGCTCAAGGCCCTCGGCTCCAGCGTCTCTGCCGATGAGCTTCAGCGTGTCATGGGCAATCTCGACACCGACCGCGACGGCTTCATTTGCCTCGACGAGTTCAACGCCTTCTGGGTCTCCGGCTCCAAGGACGGCAACGCCGCCGAGCTTTGCGACGCCTTTCAATCTCTACGACCAGGACCGCAACGGCTTCATCTCGGCCAACGAGCTCCATTTGGTGCTCAATCAACTCCAACAAATGCCGTGTGGCTCTGCGCAGCCATCGGTTTGCTGTTTGGACTGCCCATCTTGAAACTTGATGTAGCATTCACAGCCTTCATTTCAGTTAGTACAATTGGCTGGGTGGGTAGTTATGCGGTGCCAATTTTTGCTAGGCTGGTGATGCTGAAGAGAACTTCAAACCAGGACCCTTTTATTTGGGTAGAGCAAGCAGGCCAGTTTGCTTGGTGGCCTTCCTGTGGAAAACAAAACGGGCAAAAGGCCCTGCTTCGACATTTCAAAGGAGAAGAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Asp EF-hand_1 EF-hand_5 TAXi_N

Protein Analysis

220

Amino Acids

23.62

Weight (kDa)

6.12

Isoelectric Point (pI)

30.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18210 AT1G18210 AT1G73630
fragaria_vesca	FvH4_5g17240
malus_domestica	MD03G1137400.v1.1 MD06G1216800.v1.1 MD06G1231000.v1.1 MD13G1184700.v1.1
prunus_persica	Prupe.1G192900_v2.0.a1 Prupe.3G199600_v2.0.a1 Prupe.5G232300_v2.0.a1 Prupe.7G023700_v2.0.a1
pyrus_communis	pycom14g19650 pycom14g19660
rosa_chinensis	RchiOBHm_Chr7g0178551
rosa_laevigata	RLG00000005438
rosa_multiflora	Rmu_co8293555.1_g000001 Rmu_sc0012505.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274820
rosa_rugosa	Rorug06G0417900
rosa_samantha	Rh7AG016500 Rh7BG016000 Rh7DG016600
rosa_wichuraiana	Rw7G001310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	400
AccB1I	GGYRCC	1 cut(s)	502
AccI	GTMKAC	1 cut(s)	48
AccII	CGCG	1 cut(s)	219
AciI	CCGC	4 cut(s)	217, 285, 326, 500
AcoI	YGGCCR	1 cut(s)	343
AcuI	CTGAAG	2 cut(s)	170, 551
AcyI	GRCGYC	3 cut(s)	51, 102, 300
AfaI	GTAC	1 cut(s)	475
AfiI	CCNNNNNNNGG	1 cut(s)	602
AgsI	TTSAA	6 cut(s)	91, 247, 308, 436, 543, 643
AjnI	CCWGG	2 cut(s)	319, 546
AluBI	AGCT	5 cut(s)	96, 136, 184, 292, 353
AluI	AGCT	5 cut(s)	96, 136, 184, 292, 353
Alw21I	GWGCWC	4 cut(s)	138, 150, 355, 367
Alw26I	GTCTC	3 cut(s)	133, 175, 265
AoxI	GGCC	5 cut(s)	153, 343, 577, 593, 624
ApeKI	GCWGC	1 cut(s)	401
AspLEI	GCGC	1 cut(s)	401
AspS9I	GGNCC	4 cut(s)	154, 323, 550, 625
AsuHPI	GGTGA	3 cut(s)	58, 122, 535
AvaII	GGWCC	2 cut(s)	323, 550
BanI	GGYRCC	1 cut(s)	502
BanII	GRGCYC	2 cut(s)	138, 355
BbsI	GAAGAC	1 cut(s)	79
Bbv12I	GWGCWC	4 cut(s)	138, 150, 355, 367
BbvI	GCAGC	1 cut(s)	413
BccI	CCATC	2 cut(s)	413, 437
BceAI	ACGGC	5 cut(s)	130, 238, 292, 347, 371
BciT130I	CCWGG	2 cut(s)	321, 548
BcoDI	GTCTC	3 cut(s)	133, 175, 265
BfaI	CTAG	1 cut(s)	516
BglII	AGATCT	1 cut(s)	120
BisI	GCNGC	2 cut(s)	285, 402
BlsI	GCNGC	2 cut(s)	286, 403
Bme1390I	CCNGG	2 cut(s)	321, 548
Bme18I	GGWCC	2 cut(s)	323, 550
BmgT120I	GGNCC	4 cut(s)	154, 323, 550, 625
BmiI	GGNNCC	5 cut(s)	16, 163, 268, 504, 552
BmrFI	CCNGG	2 cut(s)	321, 548
BmsI	GCATC	1 cut(s)	516
BpiI	GAAGAC	1 cut(s)	79
BpmI	CTGGAG	1 cut(s)	148
BpuEI	CTTGAG	1 cut(s)	134
BsaHI	GRCGYC	3 cut(s)	51, 102, 300
BsaI	GGTCTC	1 cut(s)	265
BsaJI	CCNNGG	2 cut(s)	157, 270
Bsc4I	CCNNNNNNNGG	1 cut(s)	602
Bse1I	ACTGG	2 cut(s)	59, 580
BseBI	CCWGG	2 cut(s)	321, 548
BseDI	CCNNGG	2 cut(s)	157, 270
BseLI	CCNNNNNNNGG	1 cut(s)	602
BseNI	ACTGG	2 cut(s)	59, 580
BseXI	GCAGC	1 cut(s)	413
BseYI	CCCAGC	2 cut(s)	25, 483
Bsh1236I	CGCG	1 cut(s)	219
Bsh1285I	CGRYCG	1 cut(s)	217
BshFI	GGCC	5 cut(s)	155, 345, 579, 595, 626
BshNI	GGYRCC	1 cut(s)	502
BsiEI	CGRYCG	1 cut(s)	217
BsiHKAI	GWGCWC	4 cut(s)	138, 150, 355, 367
BsiSI	CCGG	1 cut(s)	264
BslI	CCNNNNNNNGG	1 cut(s)	602
BsmAI	GTCTC	3 cut(s)	133, 175, 265
BsmBI	CGTCTC	2 cut(s)	133, 175
BsmI	GAATGC	1 cut(s)	449
BsnI	GGCC	5 cut(s)	155, 345, 579, 595, 626
Bso31I	GGTCTC	1 cut(s)	265
Bsp1286I	GDGCHC	4 cut(s)	138, 150, 355, 367
Bsp143I	GATC	1 cut(s)	120
BspACI	CCGC	4 cut(s)	217, 285, 326, 500
BspANI	GGCC	5 cut(s)	155, 345, 579, 595, 626
BspFNI	CGCG	1 cut(s)	219
BspLI	GGNNCC	5 cut(s)	16, 163, 268, 504, 552
BspT107I	GGYRCC	1 cut(s)	502
BspTNI	GGTCTC	1 cut(s)	265
BsrI	ACTGG	2 cut(s)	59, 580
BssECI	CCNNGG	2 cut(s)	157, 270
BssMI	GATC	1 cut(s)	120
BssNI	GRCGYC	3 cut(s)	51, 102, 300
BssT1I	CCWWGG	1 cut(s)	270
Bst2UI	CCWGG	2 cut(s)	321, 548
Bst6I	CTCTTC	1 cut(s)	527
BstACI	GRCGYC	3 cut(s)	51, 102, 300
BstC8I	GCNNGC	2 cut(s)	573, 577
BstFNI	CGCG	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	401
BstKTI	GATC	1 cut(s)	123
BstMAI	GTCTC	3 cut(s)	133, 175, 265
BstMBI	GATC	1 cut(s)	120
BstMCI	CGRYCG	1 cut(s)	217
BstMWI	GCNNNNNNNGC	3 cut(s)	231, 455, 526
BstNI	CCWGG	2 cut(s)	321, 548
BstSCI	CCNGG	2 cut(s)	319, 546
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	413
BstV2I	GAAGAC	1 cut(s)	79
BstX2I	RGATCY	1 cut(s)	120
BstYI	RGATCY	1 cut(s)	120
BsuRI	GGCC	5 cut(s)	155, 345, 579, 595, 626
Cac8I	GCNNGC	2 cut(s)	573, 577
CfoI	GCGC	1 cut(s)	401
Cfr13I	GGNCC	4 cut(s)	154, 323, 550, 625
CseI	GACGC	4 cut(s)	59, 110, 157, 308
Csp6I	GTAC	1 cut(s)	474
CviAII	CATG	1 cut(s)	196
CviQI	GTAC	1 cut(s)	474
DpnI	GATC	1 cut(s)	122
DpnII	GATC	1 cut(s)	120
EaeI	YGGCCR	1 cut(s)	343
Eam1104I	CTCTTC	1 cut(s)	527
EarI	CTCTTC	1 cut(s)	527
Ecl136II	GAGCTC	2 cut(s)	136, 353
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	2 cut(s)	138, 355
Eco31I	GGTCTC	1 cut(s)	265
Eco47I	GGWCC	2 cut(s)	323, 550
Eco53kI	GAGCTC	2 cut(s)	136, 353
Eco57I	CTGAAG	2 cut(s)	170, 551
EcoICRI	GAGCTC	2 cut(s)	136, 353
EcoO109I	RGGNCCY	3 cut(s)	154, 550, 625
EcoRII	CCWGG	2 cut(s)	319, 546
EcoT14I	CCWWGG	1 cut(s)	270
EcoT38I	GRGCYC	2 cut(s)	138, 355
ErhI	CCWWGG	1 cut(s)	270
Esp3I	CGTCTC	2 cut(s)	133, 175
FaeI	CATG	1 cut(s)	199
FaiI	YATR	2 cut(s)	197, 498
FatI	CATG	1 cut(s)	195
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	2 cut(s)	285, 402
FriOI	GRGCYC	2 cut(s)	138, 355
Fsp4HI	GCNGC	2 cut(s)	285, 402
FspBI	CTAG	1 cut(s)	516
FspI	TGCGCA	1 cut(s)	400
GlaI	GCGC	1 cut(s)	400
GluI	GCNGC	2 cut(s)	285, 402
GsaI	CCCAGC	2 cut(s)	29, 487
GsuI	CTGGAG	1 cut(s)	148
HaeIII	GGCC	5 cut(s)	155, 345, 579, 595, 626
HapII	CCGG	1 cut(s)	264
HgaI	GACGC	4 cut(s)	59, 110, 157, 308
HhaI	GCGC	1 cut(s)	401
Hin1I	GRCGYC	3 cut(s)	51, 102, 300
Hin1II	CATG	1 cut(s)	199
Hin6I	GCGC	1 cut(s)	399
HinP1I	GCGC	1 cut(s)	399
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HindIII	AAGCTT	1 cut(s)	94
HinfI	GANTC	1 cut(s)	84
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	3 cut(s)	58, 122, 535
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	2 cut(s)	81, 133
Hpy188III	TCNNGA	2 cut(s)	206, 433
Hpy8I	GTNNAC	1 cut(s)	49
Hpy99I	CGWCG	7 cut(s)	50, 53, 74, 104, 224, 242, 302
HpyAV	CCTTC	3 cut(s)	262, 469, 606
HpyCH4IV	ACGT	1 cut(s)	144
HpyF10VI	GCNNNNNNNGC	3 cut(s)	231, 455, 526
HpySE526I	ACGT	1 cut(s)	144
Hsp92I	GRCGYC	3 cut(s)	51, 102, 300
Hsp92II	CATG	1 cut(s)	199
HspAI	GCGC	1 cut(s)	399
Kzo9I	GATC	1 cut(s)	120
LmnI	GCTCC	3 cut(s)	167, 272, 358
Lsp1109I	GCAGC	1 cut(s)	413
LweI	GCATC	1 cut(s)	516
MaeI	CTAG	1 cut(s)	516
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	2 cut(s)	64, 110
MalI	GATC	1 cut(s)	122
MboI	GATC	1 cut(s)	120
MboII	GAAGA	2 cut(s)	79, 544
MfeI	CAATTG	1 cut(s)	477
MflI	RGATCY	1 cut(s)	120
MhlI	GDGCHC	4 cut(s)	138, 150, 355, 367
MluCI	AATT	2 cut(s)	477, 507
MlyI	GAGTC	1 cut(s)	93
MmeI	TCCRAC	1 cut(s)	401
MnlI	CCTC	3 cut(s)	67, 167, 245
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	2 cut(s)	321, 548
MunI	CAATTG	1 cut(s)	477
Mva1269I	GAATGC	1 cut(s)	449
MvaI	CCWGG	2 cut(s)	321, 548
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	3 cut(s)	231, 455, 526
NdeII	GATC	1 cut(s)	120
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	5 cut(s)	16, 163, 268, 504, 552
NmeAIII	GCCGAG	4 cut(s)	117, 138, 313, 321
NmuCI	GTSAC	2 cut(s)	64, 110
NsbI	TGCGCA	1 cut(s)	400
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PctI	GAATGC	1 cut(s)	449
PkrI	GCNGC	2 cut(s)	286, 403
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
PpuMI	RGGWCCY	1 cut(s)	550
Psp124BI	GAGCTC	2 cut(s)	138, 355
Psp5II	RGGWCCY	1 cut(s)	550
Psp6I	CCWGG	2 cut(s)	319, 546
PspFI	CCCAGC	2 cut(s)	25, 483
PspGI	CCWGG	2 cut(s)	319, 546
PspN4I	GGNNCC	5 cut(s)	16, 163, 268, 504, 552
PspPI	GGNCC	4 cut(s)	154, 323, 550, 625
PspPPI	RGGWCCY	1 cut(s)	550
PsuI	RGATCY	1 cut(s)	120
RsaI	GTAC	1 cut(s)	475
RsaNI	GTAC	1 cut(s)	474
SacI	GAGCTC	2 cut(s)	138, 355
SalI	GTCGAC	1 cut(s)	47
SatI	GCNGC	2 cut(s)	285, 402
Sau3AI	GATC	1 cut(s)	120
Sau96I	GGNCC	4 cut(s)	154, 323, 550, 625
SchI	GAGTC	1 cut(s)	93
ScrFI	CCNGG	2 cut(s)	321, 548
SduI	GDGCHC	4 cut(s)	138, 150, 355, 367
SetI	ASST	7 cut(s)	78, 98, 138, 147, 186, 294, 355
SfaNI	GCATC	1 cut(s)	516
SgrDI	CGTCGACG	1 cut(s)	47
SinI	GGWCC	2 cut(s)	323, 550
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	2 cut(s)	477, 507
SsiI	CCGC	4 cut(s)	217, 285, 326, 500
SspMI	CTAG	1 cut(s)	516
SstI	GAGCTC	2 cut(s)	138, 355
StyD4I	CCNGG	2 cut(s)	319, 546
StyI	CCWWGG	1 cut(s)	270
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	5 cut(s)	48, 99, 207, 237, 634
TasI	AATT	2 cut(s)	477, 507
TatI	WGTACW	1 cut(s)	473
TauI	GCSGC	1 cut(s)	287
TseFI	GTSAC	2 cut(s)	64, 110
TseI	GCWGC	1 cut(s)	401
Tsp45I	GTSAC	2 cut(s)	64, 110
TspDTI	ATGAA	3 cut(s)	217, 326, 451
TspGWI	ACGGA	3 cut(s)	27, 34, 115
VpaK11BI	GGWCC	2 cut(s)	323, 550
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.