Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007579

Physical Location & Seq

Genomic Coordinates Reverse (-)

66442004 .. 66442498

Gene Structure 495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00274820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCTTCCAACGGAACCCCAACCACCGCCGACGCCAAACCCGTCGTGACCGACGAGGTCCACCGCGTCTTCAAGAGCTTCGACGCCAACGGCGACGGCAAGATCTCAACCTCCGAGCTCGGCAACGTCCTCGAGGCCCTCGGCTCCAACGTCCCCGAGGACGAGCTCCAGCGCGTGATGGTCGACCTCGACACCGACCGCGACGGCTTCATCTGCCTCGACGAGTTCAACGCCTTCTGGGTGGCCGGCGACGGCGGCTCCTCCGAGCTCAAGGAGGCCTTCGATCTGTACGACCAGGACCGCAACGGCCTCATCTCCGTCGAGGAGCTCCACCTCGTCCTCAACCGGCTTCAGATGAAGTGCACCGTCGAGGATTGCAACCGCATGATCCAGTCCGTTGACGCCGACGGCGACGGGAATGTGAATTTCGAGGAGTTCAAGAAGATGATGAGCCACAACTCCAGCAGCGCCGGCACCGTCTCTAACGGCGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

164

Amino Acids

17.83

Weight (kDa)

4.25

Isoelectric Point (pI)

30.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	19 - 46	1.9e-06	EF hand domain
EF-hand_7	PF13499	19 - 79	4.3e-14	EF-hand domain pair
EF-hand_6	PF13405	20 - 48	2.1e-07	EF-hand domain
EF-hand_5	PF13202	23 - 43	1.2e-06	EF hand
EF-hand_7	PF13499	88 - 151	2.5e-15	EF-hand domain pair
EF-hand_1	PF00036	89 - 116	8.3e-07	EF hand domain
EF-hand_6	PF13405	89 - 116	7.1e-07	EF-hand domain
EF-hand_8	PF13833	105 - 152	9.1e-07	EF-hand domain pair
EF-hand_1	PF00036	126 - 152	1.4e-07	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18210 AT1G18210 AT1G73630
fragaria_vesca	FvH4_5g17240
malus_domestica	MD03G1137400.v1.1 MD06G1216800.v1.1 MD06G1231000.v1.1 MD13G1184700.v1.1
prunus_persica	Prupe.1G192900_v2.0.a1 Prupe.3G199600_v2.0.a1 Prupe.5G232300_v2.0.a1 Prupe.7G023700_v2.0.a1
pyrus_communis	pycom14g19650 pycom14g19660
rosa_chinensis	RchiOBHm_Chr7g0178551
rosa_laevigata	RLG00000005438
rosa_multiflora	Rmu_co8293555.1_g000001 Rmu_sc0012505.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274820
rosa_rugosa	Rorug06G0417900
rosa_samantha	Rh7AG016500 Rh7BG016000 Rh7DG016600
rosa_wichuraiana	Rw7G001310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	131
AccB1I	GGYRCC	2 cut(s)	473, 488
AccI	GTMKAC	1 cut(s)	183
AccII	CGCG	3 cut(s)	66, 174, 201
AciI	CCGC	6 cut(s)	27, 64, 199, 255, 301, 382
AclWI	GGATC	1 cut(s)	382
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	424
AcuI	CTGAAG	1 cut(s)	335
AcyI	GRCGYC	4 cut(s)	33, 84, 402, 489
AfaI	GTAC	1 cut(s)	290
AgsI	TTSAA	3 cut(s)	73, 229, 439
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	5 cut(s)	78, 118, 166, 268, 328
AluI	AGCT	5 cut(s)	78, 118, 166, 268, 328
Alw21I	GWGCWC	5 cut(s)	120, 168, 270, 330, 365
Alw26I	GTCTC	1 cut(s)	484
Alw44I	GTGCAC	1 cut(s)	361
AlwI	GGATC	1 cut(s)	382
Ama87I	CYCGRG	2 cut(s)	131, 155
AoxI	GGCC	4 cut(s)	135, 243, 276, 307
ApaLI	GTGCAC	1 cut(s)	361
ApeKI	GCWGC	1 cut(s)	465
ApoI	RAATTY	1 cut(s)	424
AspLEI	GCGC	3 cut(s)	174, 470, 491
AspS9I	GGNCC	3 cut(s)	58, 136, 298
AvaI	CYCGRG	2 cut(s)	131, 155
AvaII	GGWCC	2 cut(s)	58, 298
BaeGI	GKGCMC	1 cut(s)	365
BanI	GGYRCC	2 cut(s)	473, 488
BanII	GRGCYC	4 cut(s)	120, 168, 270, 330
BbsI	GAAGAC	1 cut(s)	61
Bbv12I	GWGCWC	5 cut(s)	120, 168, 270, 330, 365
BbvI	GCAGC	1 cut(s)	477
BccI	CCATC	1 cut(s)	172
BceAI	ACGGC	6 cut(s)	106, 112, 220, 268, 322, 424
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BciT130I	CCWGG	1 cut(s)	296
BcoDI	GTCTC	1 cut(s)	484
BfoI	RGCGCY	2 cut(s)	471, 492
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	2 cut(s)	256, 466
BlsI	GCNGC	2 cut(s)	257, 467
Bme1390I	CCNGG	1 cut(s)	296
Bme18I	GGWCC	2 cut(s)	58, 298
BmeT110I	CYCGRG	2 cut(s)	131, 155
BmgT120I	GGNCC	3 cut(s)	58, 136, 298
BmiI	GGNNCC	5 cut(s)	16, 145, 259, 475, 490
BmrFI	CCNGG	1 cut(s)	296
BpiI	GAAGAC	1 cut(s)	61
BpmI	CTGGAG	2 cut(s)	152, 445
BpuEI	CTTGAG	1 cut(s)	254
BsaHI	GRCGYC	4 cut(s)	33, 84, 402, 489
BsaJI	CCNNGG	2 cut(s)	139, 156
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bse118I	RCCGGY	3 cut(s)	245, 345, 470
Bse1I	ACTGG	1 cut(s)	391
BseBI	CCWGG	1 cut(s)	296
BseDI	CCNNGG	2 cut(s)	139, 156
BseNI	ACTGG	1 cut(s)	391
BseRI	GAGGAG	3 cut(s)	250, 338, 446
BseSI	GKGCMC	1 cut(s)	365
BseXI	GCAGC	1 cut(s)	477
Bsh1236I	CGCG	3 cut(s)	66, 174, 201
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	4 cut(s)	137, 245, 278, 309
BshNI	GGYRCC	2 cut(s)	473, 488
BsiEI	CGRYCG	1 cut(s)	199
BsiHKAI	GWGCWC	5 cut(s)	120, 168, 270, 330, 365
BsiHKCI	CYCGRG	2 cut(s)	131, 155
BsiSI	CCGG	3 cut(s)	246, 346, 471
BslFI	GGGAC	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	484
BsmBI	CGTCTC	1 cut(s)	484
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	4 cut(s)	137, 245, 278, 309
BsoBI	CYCGRG	2 cut(s)	131, 155
Bsp1286I	GDGCHC	5 cut(s)	120, 168, 270, 330, 365
Bsp143I	GATC	3 cut(s)	102, 283, 387
BspACI	CCGC	6 cut(s)	27, 64, 199, 255, 301, 382
BspANI	GGCC	4 cut(s)	137, 245, 278, 309
BspFNI	CGCG	3 cut(s)	66, 174, 201
BspLI	GGNNCC	5 cut(s)	16, 145, 259, 475, 490
BspPI	GGATC	1 cut(s)	382
BspT107I	GGYRCC	2 cut(s)	473, 488
BsrFI	RCCGGY	3 cut(s)	245, 345, 470
BsrI	ACTGG	1 cut(s)	391
BssAI	RCCGGY	3 cut(s)	245, 345, 470
BssECI	CCNNGG	2 cut(s)	139, 156
BssMI	GATC	3 cut(s)	102, 283, 387
BssNI	GRCGYC	4 cut(s)	33, 84, 402, 489
Bst2UI	CCWGG	1 cut(s)	296
Bst4CI	ACNGT	2 cut(s)	367, 478
BstACI	GRCGYC	4 cut(s)	33, 84, 402, 489
BstC8I	GCNNGC	2 cut(s)	247, 472
BstFNI	CGCG	3 cut(s)	66, 174, 201
BstH2I	RGCGCY	2 cut(s)	471, 492
BstHHI	GCGC	3 cut(s)	174, 470, 491
BstKTI	GATC	3 cut(s)	105, 286, 390
BstMAI	GTCTC	1 cut(s)	484
BstMBI	GATC	3 cut(s)	102, 283, 387
BstMCI	CGRYCG	1 cut(s)	199
BstMWI	GCNNNNNNNGC	3 cut(s)	213, 255, 471
BstNI	CCWGG	1 cut(s)	296
BstSCI	CCNGG	1 cut(s)	294
BstSLI	GKGCMC	1 cut(s)	365
BstUI	CGCG	3 cut(s)	66, 174, 201
BstV1I	GCAGC	1 cut(s)	477
BstV2I	GAAGAC	1 cut(s)	61
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
BsuRI	GGCC	4 cut(s)	137, 245, 278, 309
Cac8I	GCNNGC	2 cut(s)	247, 472
CfoI	GCGC	3 cut(s)	174, 470, 491
Cfr10I	RCCGGY	3 cut(s)	245, 345, 470
Cfr13I	GGNCC	3 cut(s)	58, 136, 298
CseI	GACGC	4 cut(s)	41, 55, 92, 410
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	1 cut(s)	385
CviQI	GTAC	1 cut(s)	289
DinI	GGCGCC	1 cut(s)	490
DpnI	GATC	3 cut(s)	104, 285, 389
DpnII	GATC	3 cut(s)	102, 283, 387
EaeI	YGGCCR	1 cut(s)	243
Ecl136II	GAGCTC	4 cut(s)	118, 166, 268, 328
Eco147I	AGGCCT	1 cut(s)	278
Eco24I	GRGCYC	4 cut(s)	120, 168, 270, 330
Eco47I	GGWCC	2 cut(s)	58, 298
Eco53kI	GAGCTC	4 cut(s)	118, 166, 268, 328
Eco57I	CTGAAG	1 cut(s)	335
Eco88I	CYCGRG	2 cut(s)	131, 155
EcoICRI	GAGCTC	4 cut(s)	118, 166, 268, 328
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	294
EcoT38I	GRGCYC	4 cut(s)	120, 168, 270, 330
EgeI	GGCGCC	1 cut(s)	490
EheI	GGCGCC	1 cut(s)	490
Esp3I	CGTCTC	1 cut(s)	484
FaeI	CATG	1 cut(s)	388
FaiI	YATR	1 cut(s)	386
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	1 cut(s)	384
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	2 cut(s)	256, 466
FriOI	GRGCYC	4 cut(s)	120, 168, 270, 330
Fsp4HI	GCNGC	2 cut(s)	256, 466
GlaI	GCGC	3 cut(s)	173, 469, 490
GluI	GCNGC	2 cut(s)	256, 466
GsuI	CTGGAG	2 cut(s)	152, 445
HaeII	RGCGCY	2 cut(s)	471, 492
HaeIII	GGCC	4 cut(s)	137, 245, 278, 309
HapII	CCGG	3 cut(s)	246, 346, 471
HgaI	GACGC	4 cut(s)	41, 55, 92, 410
HhaI	GCGC	3 cut(s)	174, 470, 491
Hin1I	GRCGYC	4 cut(s)	33, 84, 402, 489
Hin1II	CATG	1 cut(s)	388
Hin6I	GCGC	3 cut(s)	172, 468, 489
HinP1I	GCGC	3 cut(s)	172, 468, 489
HincII	GTYRAC	2 cut(s)	184, 400
HindII	GTYRAC	2 cut(s)	184, 400
HpaII	CCGG	3 cut(s)	246, 346, 471
Hpy166II	GTNNAC	4 cut(s)	61, 184, 363, 400
Hpy188I	TCNGA	3 cut(s)	115, 265, 354
Hpy188III	TCNNGA	3 cut(s)	46, 73, 439
Hpy8I	GTNNAC	4 cut(s)	61, 184, 363, 400
HpyAV	CCTTC	2 cut(s)	244, 289
HpyCH4III	ACNGT	2 cut(s)	367, 478
HpyCH4IV	ACGT	2 cut(s)	126, 150
HpyCH4V	TGCA	2 cut(s)	363, 378
HpyF10VI	GCNNNNNNNGC	3 cut(s)	213, 255, 471
HpySE526I	ACGT	2 cut(s)	126, 150
Hsp92I	GRCGYC	4 cut(s)	33, 84, 402, 489
Hsp92II	CATG	1 cut(s)	388
HspAI	GCGC	3 cut(s)	172, 468, 489
KasI	GGCGCC	1 cut(s)	488
KroI	GCCGGC	2 cut(s)	245, 470
KroNI	GCCGGC	2 cut(s)	247, 472
Kzo9I	GATC	3 cut(s)	102, 283, 387
LmnI	GCTCC	5 cut(s)	149, 171, 263, 325, 333
LpnPI	CCDG	9 cut(s)	182, 223, 259, 281, 308, 359, 404, 475, 484
Lsp1109I	GCAGC	1 cut(s)	477
MaeII	ACGT	2 cut(s)	126, 150
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	3 cut(s)	104, 285, 389
MboI	GATC	3 cut(s)	102, 283, 387
MboII	GAAGA	2 cut(s)	61, 454
MflI	RGATCY	1 cut(s)	102
MhlI	GDGCHC	5 cut(s)	120, 168, 270, 330, 365
MluCI	AATT	1 cut(s)	424
Mly113I	GGCGCC	1 cut(s)	489
MmeI	TCCRAC	2 cut(s)	33, 171
MroNI	GCCGGC	2 cut(s)	245, 470
MspI	CCGG	3 cut(s)	246, 346, 471
MspR9I	CCNGG	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	296
MvnI	CGCG	3 cut(s)	66, 174, 201
MwoI	GCNNNNNNNGC	3 cut(s)	213, 255, 471
NaeI	GCCGGC	2 cut(s)	247, 472
NarI	GGCGCC	1 cut(s)	489
NdeII	GATC	3 cut(s)	102, 283, 387
NgoMIV	GCCGGC	2 cut(s)	245, 470
NlaIII	CATG	1 cut(s)	388
NlaIV	GGNNCC	5 cut(s)	16, 145, 259, 475, 490
NmeAIII	GCCGAG	2 cut(s)	99, 120
NmuCI	GTSAC	1 cut(s)	46
PaeR7I	CTCGAG	1 cut(s)	131
PceI	AGGCCT	1 cut(s)	278
PcsI	WCGNNNNNNNCGW	6 cut(s)	39, 51, 90, 147, 288, 408
PdiI	GCCGGC	2 cut(s)	247, 472
PflFI	GACNNNGTC	1 cut(s)	56
PkrI	GCNGC	2 cut(s)	257, 467
PluTI	GGCGCC	1 cut(s)	492
Psp124BI	GAGCTC	4 cut(s)	120, 168, 270, 330
Psp6I	CCWGG	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	5 cut(s)	16, 145, 259, 475, 490
PspPI	GGNCC	3 cut(s)	58, 136, 298
PspXI	VCTCGAGB	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	102
PsyI	GACNNNGTC	1 cut(s)	56
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SacI	GAGCTC	4 cut(s)	120, 168, 270, 330
SalI	GTCGAC	1 cut(s)	182
SatI	GCNGC	2 cut(s)	256, 466
Sau3AI	GATC	3 cut(s)	102, 283, 387
Sau96I	GGNCC	3 cut(s)	58, 136, 298
ScrFI	CCNGG	1 cut(s)	296
SduI	GDGCHC	5 cut(s)	120, 168, 270, 330, 365
SfoI	GGCGCC	1 cut(s)	490
Sfr274I	CTCGAG	1 cut(s)	131
SinI	GGWCC	2 cut(s)	58, 298
SlaI	CTCGAG	1 cut(s)	131
SmlI	CTYRAG	2 cut(s)	131, 269
SmoI	CTYRAG	2 cut(s)	131, 269
Sse9I	AATT	1 cut(s)	424
SseBI	AGGCCT	1 cut(s)	278
SsiI	CCGC	6 cut(s)	27, 64, 199, 255, 301, 382
SspDI	GGCGCC	1 cut(s)	488
SstI	GAGCTC	4 cut(s)	120, 168, 270, 330
StuI	AGGCCT	1 cut(s)	278
StyD4I	CCNGG	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	367, 478
TaiI	ACGT	2 cut(s)	129, 153
TaqI	TCGA	9 cut(s)	81, 132, 183, 189, 219, 282, 321, 369, 429
TaqII	GACCGA	1 cut(s)	65
TasI	AATT	1 cut(s)	424
TauI	GCSGC	1 cut(s)	258
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	1 cut(s)	465
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	2 cut(s)	199, 371
TspGWI	ACGGA	3 cut(s)	27, 307, 385
Tth111I	GACNNNGTC	1 cut(s)	56
VneI	GTGCAC	1 cut(s)	361
VpaK11BI	GGWCC	2 cut(s)	58, 298
XapI	RAATTY	1 cut(s)	424
XhoI	CTCGAG	1 cut(s)	131
XmiI	GTMKAC	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.