Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0007579

Physical Location & Seq

Genomic Coordinates Reverse (-)

20905428 .. 20906227

Gene Structure 800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g19660.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGCACTTGGGATTAAATAAACTTTGGACCAACTTATTTTTCAAAGAAGAACTTGCTCTAAAAATTTTTACCGCTTTACTTGGCGGCAACAATAAATCCCTTCCCTCCCAACGTCTCCCGACCGCCATCATATTTTTGCTATATAAACCCACAGACTTCCCCCTTTCTCTCTTGAATTCTGAAAGCTCCGAGAACACACAATTACCAAAAAACCAGAAATTTCCAACAACCATGGCAACCAACGGAGCCCCAACCTCGACCGGCCCCAAACCCGTCGTCACCGACGAGGTCCAGAAGGTCTTCAAAAACTTCGACGCCAACGGCGATGGCAAGATCTCCGTCAACGAGCTCGGCAACGACCTCAAGGCCCTCGGCTCCAACGTCTCCGACGACAAGCTCAAGCGCGTCATGGTCGATCTCGACACCGACAACGATGGCTTCATTTGCCTCGACGAGTTCAACTCCTTCTGGGTCTCCGGCTCCAAGGACGGCGGCGCCGCTGAGCTCAAAGACGCCTTCGATCTCTACGACCAGGACCGCAACGGCCTCATCTCCACCAACGAACTCCACCTGGTGCTCAGCCGCCTCAACTTGGCCTGCACGGTCGAGGATTGCAACCGGATCGATCAAGTCCGTCGATGCCGACGGCGACGGGAATGTGAATTTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

224

Amino Acids

24.96

Weight (kDa)

5.53

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18210 AT1G18210 AT1G73630
fragaria_vesca	FvH4_5g17240
malus_domestica	MD03G1137400.v1.1 MD06G1216800.v1.1 MD06G1231000.v1.1 MD13G1184700.v1.1
prunus_persica	Prupe.1G192900_v2.0.a1 Prupe.3G199600_v2.0.a1 Prupe.5G232300_v2.0.a1 Prupe.7G023700_v2.0.a1
pyrus_communis	pycom14g19650 pycom14g19660
rosa_chinensis	RchiOBHm_Chr7g0178551
rosa_laevigata	RLG00000005438
rosa_multiflora	Rmu_co8293555.1_g000001 Rmu_sc0012505.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274820
rosa_rugosa	Rorug06G0417900
rosa_samantha	Rh7AG016500 Rh7BG016000 Rh7DG016600
rosa_wichuraiana	Rw7G001310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	494
AccII	CGCG	1 cut(s)	405
AciI	CCGC	7 cut(s)	72, 84, 123, 492, 498, 538, 583
AclWI	GGATC	1 cut(s)	629
AcsI	RAATTY	4 cut(s)	63, 175, 218, 662
AcyI	GRCGYC	3 cut(s)	315, 495, 513
AdeI	CACNNNGTG	1 cut(s)	574
AfiI	CCNNNNNNNGG	1 cut(s)	592
AgsI	TTSAA	4 cut(s)	43, 175, 304, 460
AjnI	CCWGG	2 cut(s)	531, 570
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AluBI	AGCT	4 cut(s)	186, 349, 397, 505
AluI	AGCT	4 cut(s)	186, 349, 397, 505
Alw21I	GWGCWC	3 cut(s)	351, 507, 579
Alw26I	GTCTC	3 cut(s)	119, 388, 478
AlwI	GGATC	1 cut(s)	629
AoxI	GGCC	4 cut(s)	262, 366, 544, 594
ApoI	RAATTY	4 cut(s)	63, 175, 218, 662
ArsI	GACNNNNNNTTYG	2 cut(s)	261, 293
Asp700I	GAANNNNTTC	1 cut(s)	299
AspLEI	GCGC	2 cut(s)	405, 497
AspS9I	GGNCC	5 cut(s)	27, 263, 289, 367, 535
AsuHPI	GGTGA	1 cut(s)	271
AvaII	GGWCC	3 cut(s)	27, 289, 535
BanI	GGYRCC	1 cut(s)	494
BanII	GRGCYC	3 cut(s)	250, 351, 507
BbsI	GAAGAC	1 cut(s)	292
Bbv12I	GWGCWC	3 cut(s)	351, 507, 579
BccI	CCATC	3 cut(s)	134, 320, 428
BceAI	ACGGC	4 cut(s)	337, 505, 559, 662
BcgI	CGANNNNNNTGC	2 cut(s)	604, 638
BciT130I	CCWGG	2 cut(s)	533, 572
BcoDI	GTCTC	3 cut(s)	119, 388, 478
BfoI	RGCGCY	1 cut(s)	498
BglII	AGATCT	1 cut(s)	333
BisI	GCNGC	4 cut(s)	85, 493, 498, 583
BlpI	GCTNAGC	2 cut(s)	501, 578
BlsI	GCNGC	4 cut(s)	86, 494, 499, 584
Bme1390I	CCNGG	2 cut(s)	533, 572
Bme18I	GGWCC	3 cut(s)	27, 289, 535
BmgT120I	GGNCC	5 cut(s)	27, 263, 289, 367, 535
BmiI	GGNNCC	5 cut(s)	247, 265, 376, 481, 496
BmrFI	CCNGG	2 cut(s)	533, 572
BmsI	GCATC	1 cut(s)	629
BpiI	GAAGAC	1 cut(s)	292
BplI	GAGNNNNNCTC	2 cut(s)	446, 478
Bpu1102I	GCTNAGC	2 cut(s)	501, 578
BpuEI	CTTGAG	2 cut(s)	347, 383
Bsa29I	ATCGAT	1 cut(s)	624
BsaHI	GRCGYC	3 cut(s)	315, 495, 513
BsaI	GGTCTC	1 cut(s)	478
BsaJI	CCNNGG	3 cut(s)	231, 370, 483
BsaWI	WCCGGW	1 cut(s)	618
Bsc4I	CCNNNNNNNGG	1 cut(s)	592
Bse118I	RCCGGY	1 cut(s)	260
BseBI	CCWGG	2 cut(s)	533, 572
BseCI	ATCGAT	1 cut(s)	624
BseDI	CCNNGG	3 cut(s)	231, 370, 483
BseLI	CCNNNNNNNGG	1 cut(s)	592
BseMII	CTCAG	2 cut(s)	492, 592
BsgI	GTGCAG	1 cut(s)	583
Bsh1236I	CGCG	1 cut(s)	405
Bsh1285I	CGRYCG	3 cut(s)	123, 261, 606
BshFI	GGCC	4 cut(s)	264, 368, 546, 596
BshNI	GGYRCC	1 cut(s)	494
BshVI	ATCGAT	1 cut(s)	624
BsiEI	CGRYCG	3 cut(s)	123, 261, 606
BsiHKAI	GWGCWC	3 cut(s)	351, 507, 579
BsiSI	CCGG	3 cut(s)	261, 477, 619
BslI	CCNNNNNNNGG	1 cut(s)	592
BsmAI	GTCTC	3 cut(s)	119, 388, 478
BsmBI	CGTCTC	2 cut(s)	119, 388
BsnI	GGCC	4 cut(s)	264, 368, 546, 596
Bso31I	GGTCTC	1 cut(s)	478
Bsp1286I	GDGCHC	4 cut(s)	250, 351, 507, 579
Bsp143I	GATC	5 cut(s)	333, 415, 520, 621, 625
Bsp1720I	GCTNAGC	2 cut(s)	501, 578
Bsp19I	CCATGG	1 cut(s)	231
BspACI	CCGC	7 cut(s)	72, 84, 123, 492, 498, 538, 583
BspANI	GGCC	4 cut(s)	264, 368, 546, 596
BspCNI	CTCAG	2 cut(s)	493, 591
BspDI	ATCGAT	1 cut(s)	624
BspFNI	CGCG	1 cut(s)	405
BspLI	GGNNCC	5 cut(s)	247, 265, 376, 481, 496
BspPI	GGATC	1 cut(s)	629
BspT107I	GGYRCC	1 cut(s)	494
BspTNI	GGTCTC	1 cut(s)	478
BsrFI	RCCGGY	1 cut(s)	260
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	3 cut(s)	231, 370, 483
BssMI	GATC	5 cut(s)	333, 415, 520, 621, 625
BssNI	GRCGYC	3 cut(s)	315, 495, 513
BssT1I	CCWWGG	2 cut(s)	231, 483
Bst2UI	CCWGG	2 cut(s)	533, 572
Bst4CI	ACNGT	1 cut(s)	604
BstACI	GRCGYC	3 cut(s)	315, 495, 513
BstC8I	GCNNGC	1 cut(s)	598
BstDEI	CTNAG	2 cut(s)	501, 578
BstDSI	CCRYGG	1 cut(s)	231
BstFNI	CGCG	1 cut(s)	405
BstH2I	RGCGCY	1 cut(s)	498
BstHHI	GCGC	2 cut(s)	405, 497
BstKTI	GATC	5 cut(s)	336, 418, 523, 624, 628
BstMAI	GTCTC	3 cut(s)	119, 388, 478
BstMBI	GATC	5 cut(s)	333, 415, 520, 621, 625
BstMCI	CGRYCG	3 cut(s)	123, 261, 606
BstMWI	GCNNNNNNNGC	1 cut(s)	444
BstNI	CCWGG	2 cut(s)	533, 572
BstSCI	CCNGG	2 cut(s)	531, 570
BstUI	CGCG	1 cut(s)	405
BstV2I	GAAGAC	1 cut(s)	292
BstX2I	RGATCY	1 cut(s)	333
BstYI	RGATCY	1 cut(s)	333
Bsu15I	ATCGAT	1 cut(s)	624
BsuRI	GGCC	4 cut(s)	264, 368, 546, 596
BsuTUI	ATCGAT	1 cut(s)	624
BtgI	CCRYGG	1 cut(s)	231
BtgZI	GCGATG	1 cut(s)	339
Cac8I	GCNNGC	1 cut(s)	598
CfoI	GCGC	2 cut(s)	405, 497
Cfr10I	RCCGGY	1 cut(s)	260
Cfr13I	GGNCC	5 cut(s)	27, 263, 289, 367, 535
ClaI	ATCGAT	1 cut(s)	624
CseI	GACGC	3 cut(s)	323, 394, 521
CsiI	ACCWGGT	1 cut(s)	570
CviAII	CATG	2 cut(s)	232, 409
DdeI	CTNAG	2 cut(s)	501, 578
DinI	GGCGCC	1 cut(s)	496
DpnI	GATC	5 cut(s)	335, 417, 522, 623, 627
DpnII	GATC	5 cut(s)	333, 415, 520, 621, 625
DraIII	CACNNNGTG	1 cut(s)	574
Ecl136II	GAGCTC	2 cut(s)	349, 505
Eco130I	CCWWGG	2 cut(s)	231, 483
Eco24I	GRGCYC	3 cut(s)	250, 351, 507
Eco31I	GGTCTC	1 cut(s)	478
Eco47I	GGWCC	3 cut(s)	27, 289, 535
Eco53kI	GAGCTC	2 cut(s)	349, 505
EcoICRI	GAGCTC	2 cut(s)	349, 505
EcoO109I	RGGNCCY	1 cut(s)	367
EcoRI	GAATTC	1 cut(s)	175
EcoRII	CCWGG	2 cut(s)	531, 570
EcoT14I	CCWWGG	2 cut(s)	231, 483
EcoT38I	GRGCYC	3 cut(s)	250, 351, 507
EgeI	GGCGCC	1 cut(s)	496
EheI	GGCGCC	1 cut(s)	496
ErhI	CCWWGG	2 cut(s)	231, 483
Esp3I	CGTCTC	2 cut(s)	119, 388
FaeI	CATG	2 cut(s)	235, 412
FaiI	YATR	5 cut(s)	131, 142, 144, 233, 410
FalI	AAGNNNNNCTT	2 cut(s)	36, 68
FatI	CATG	2 cut(s)	231, 408
Fnu4HI	GCNGC	4 cut(s)	85, 493, 498, 583
FriOI	GRGCYC	3 cut(s)	250, 351, 507
Fsp4HI	GCNGC	4 cut(s)	85, 493, 498, 583
GlaI	GCGC	2 cut(s)	404, 496
GluI	GCNGC	4 cut(s)	85, 493, 498, 583
HaeII	RGCGCY	1 cut(s)	498
HaeIII	GGCC	4 cut(s)	264, 368, 546, 596
HapII	CCGG	3 cut(s)	261, 477, 619
HgaI	GACGC	3 cut(s)	323, 394, 521
HhaI	GCGC	2 cut(s)	405, 497
Hin1I	GRCGYC	3 cut(s)	315, 495, 513
Hin1II	CATG	2 cut(s)	235, 412
Hin6I	GCGC	2 cut(s)	403, 495
HinP1I	GCGC	2 cut(s)	403, 495
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HpaII	CCGG	3 cut(s)	261, 477, 619
HphI	GGTGA	1 cut(s)	271
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	3 cut(s)	181, 190, 388
Hpy188III	TCNNGA	4 cut(s)	118, 172, 292, 419
Hpy8I	GTNNAC	1 cut(s)	343
Hpy99I	CGWCG	8 cut(s)	278, 287, 317, 392, 455, 639, 648, 654
HpyAV	CCTTC	4 cut(s)	110, 289, 475, 526
HpyCH4III	ACNGT	1 cut(s)	604
HpyCH4IV	ACGT	2 cut(s)	112, 381
HpyCH4V	TGCA	3 cut(s)	4, 600, 615
HpyF10VI	GCNNNNNNNGC	1 cut(s)	444
HpyF3I	CTNAG	2 cut(s)	501, 578
HpySE526I	ACGT	2 cut(s)	112, 381
Hsp92I	GRCGYC	3 cut(s)	315, 495, 513
Hsp92II	CATG	2 cut(s)	235, 412
HspAI	GCGC	2 cut(s)	403, 495
KasI	GGCGCC	1 cut(s)	494
Kzo9I	GATC	5 cut(s)	333, 415, 520, 621, 625
LmnI	GCTCC	4 cut(s)	191, 245, 380, 485
LweI	GCATC	1 cut(s)	629
MabI	ACCWGGT	1 cut(s)	570
MaeII	ACGT	2 cut(s)	112, 381
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	5 cut(s)	335, 417, 522, 623, 627
MboI	GATC	5 cut(s)	333, 415, 520, 621, 625
MboII	GAAGA	2 cut(s)	59, 292
MflI	RGATCY	1 cut(s)	333
MhlI	GDGCHC	4 cut(s)	250, 351, 507, 579
MluCI	AATT	5 cut(s)	63, 175, 200, 218, 662
Mly113I	GGCGCC	1 cut(s)	495
MmeI	TCCRAC	3 cut(s)	248, 402, 411
MnlI	CCTC	9 cut(s)	115, 265, 280, 371, 380, 458, 557, 596, 601
MroXI	GAANNNNTTC	1 cut(s)	299
MseI	TTAA	1 cut(s)	14
MspA1I	CMGCKG	1 cut(s)	500
MspI	CCGG	3 cut(s)	261, 477, 619
MspR9I	CCNGG	2 cut(s)	533, 572
MvaI	CCWGG	2 cut(s)	533, 572
MvnI	CGCG	1 cut(s)	405
MwoI	GCNNNNNNNGC	1 cut(s)	444
NarI	GGCGCC	1 cut(s)	495
NcoI	CCATGG	1 cut(s)	231
NdeII	GATC	5 cut(s)	333, 415, 520, 621, 625
NlaIII	CATG	2 cut(s)	235, 412
NlaIV	GGNNCC	5 cut(s)	247, 265, 376, 481, 496
NmeAIII	GCCGAG	2 cut(s)	330, 351
NmuCI	GTSAC	1 cut(s)	277
PcsI	WCGNNNNNNNCGW	5 cut(s)	282, 321, 378, 387, 525
PdmI	GAANNNNTTC	1 cut(s)	299
PflFI	GACNNNGTC	1 cut(s)	287
PkrI	GCNGC	4 cut(s)	86, 494, 499, 584
PluTI	GGCGCC	1 cut(s)	498
Psp124BI	GAGCTC	2 cut(s)	351, 507
Psp6I	CCWGG	2 cut(s)	531, 570
PspGI	CCWGG	2 cut(s)	531, 570
PspN4I	GGNNCC	5 cut(s)	247, 265, 376, 481, 496
PspPI	GGNCC	5 cut(s)	27, 263, 289, 367, 535
PsuI	RGATCY	1 cut(s)	333
PsyI	GACNNNGTC	1 cut(s)	287
SacI	GAGCTC	2 cut(s)	351, 507
SaqAI	TTAA	1 cut(s)	14
SatI	GCNGC	4 cut(s)	85, 493, 498, 583
Sau3AI	GATC	5 cut(s)	333, 415, 520, 621, 625
Sau96I	GGNCC	5 cut(s)	27, 263, 289, 367, 535
ScrFI	CCNGG	2 cut(s)	533, 572
SduI	GDGCHC	4 cut(s)	250, 351, 507, 579
SexAI	ACCWGGT	1 cut(s)	570
SfaNI	GCATC	1 cut(s)	629
SfoI	GGCGCC	1 cut(s)	496
SinI	GGWCC	3 cut(s)	27, 289, 535
SmlI	CTYRAG	2 cut(s)	362, 398
SmoI	CTYRAG	2 cut(s)	362, 398
Sse9I	AATT	5 cut(s)	63, 175, 200, 218, 662
SsiI	CCGC	7 cut(s)	72, 84, 123, 492, 498, 538, 583
SspDI	GGCGCC	1 cut(s)	494
SstI	GAGCTC	2 cut(s)	351, 507
StyD4I	CCNGG	2 cut(s)	531, 570
StyI	CCWWGG	2 cut(s)	231, 483
TaaI	ACNGT	1 cut(s)	604
TaiI	ACGT	2 cut(s)	115, 384
TasI	AATT	5 cut(s)	63, 175, 200, 218, 662
TauI	GCSGC	4 cut(s)	87, 495, 500, 585
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TseFI	GTSAC	1 cut(s)	277
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	1 cut(s)	430
TspGWI	ACGGA	3 cut(s)	258, 328, 623
Tth111I	GACNNNGTC	1 cut(s)	287
VpaK11BI	GGWCC	3 cut(s)	27, 289, 535
XapI	RAATTY	4 cut(s)	63, 175, 218, 662
XmnI	GAANNNNTTC	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.