Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0007579

Physical Location & Seq

Genomic Coordinates Forward (+)

3755771 .. 3756732

Gene Structure 962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G023700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGAGACCTACGAGGAAAACCCATCTCAAATCGACAGCTCTCATGTCATGAATCCGACCCGTCACAGGCCTAGTGATGGCTGGAAATCCAATCTTGTTAACGGAACCTCAAAATCCGTCGACACCAAGCTAGTTGTCACCGACGAGTTTCAGAGAGTCTTCAAAAGCTTCGACGCCAATGGTGACGGCAAGATCTCCGTCTCCGAGCTCGGCAACATGCTCAAGGCCCTCGGCTCCAGCGTCTCTGCCGATGAGCTTCAGCGTGTCATGGGCGATCTCGACACCGACCGCGACGACTTCACTTGCCTCGATGAGTTCAACGCCTTCTGGGTCTCCGGCTCCAGGGACGGCAACGCCGCCGAGCTTCGCGACGCCTTCGATCTCTACGACCAGGACCGCAACGGCCTCATCTCGGCCAACGAGCTCCATTTGGTGCTCAATCAACTCCAAATGACTTGTAGCCTCGAAGATTGCAATCGGATGATCAAGTCCGGTGATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

168

Amino Acids

18.61

Weight (kDa)

4.43

Isoelectric Point (pI)

21.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18210 AT1G18210 AT1G73630
fragaria_vesca	FvH4_5g17240
malus_domestica	MD03G1137400.v1.1 MD06G1216800.v1.1 MD06G1231000.v1.1 MD13G1184700.v1.1
prunus_persica	Prupe.1G192900_v2.0.a1 Prupe.3G199600_v2.0.a1 Prupe.5G232300_v2.0.a1 Prupe.7G023700_v2.0.a1
pyrus_communis	pycom14g19650 pycom14g19660
rosa_chinensis	RchiOBHm_Chr7g0178551
rosa_laevigata	RLG00000005438
rosa_multiflora	Rmu_co8293555.1_g000001 Rmu_sc0012505.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274820
rosa_rugosa	Rorug06G0417900
rosa_samantha	Rh7AG016500 Rh7BG016000 Rh7DG016600
rosa_wichuraiana	Rw7G001310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	2 cut(s)	291, 369
AciI	CCGC	3 cut(s)	289, 357, 397
AcoI	YGGCCR	1 cut(s)	414
AcuI	CTGAAG	1 cut(s)	242
AcyI	GRCGYC	2 cut(s)	174, 372
AfiI	CCNNNNNNNGG	4 cut(s)	66, 77, 342, 412
AgsI	TTSAA	2 cut(s)	163, 319
AjnI	CCWGG	2 cut(s)	341, 390
AluBI	AGCT	7 cut(s)	39, 130, 168, 208, 256, 364, 424
AluI	AGCT	7 cut(s)	39, 130, 168, 208, 256, 364, 424
Alw21I	GWGCWC	3 cut(s)	210, 426, 438
Alw26I	GTCTC	3 cut(s)	205, 247, 337
AoxI	GGCC	4 cut(s)	68, 225, 403, 414
AspS9I	GGNCC	2 cut(s)	226, 394
AsuHPI	GGTGA	2 cut(s)	130, 194
AvaII	GGWCC	1 cut(s)	394
BanII	GRGCYC	2 cut(s)	210, 426
BbsI	GAAGAC	1 cut(s)	151
Bbv12I	GWGCWC	3 cut(s)	210, 426, 438
BccI	CCATC	2 cut(s)	31, 71
BceAI	ACGGC	3 cut(s)	202, 364, 418
BciT130I	CCWGG	2 cut(s)	343, 392
BclI	TGATCA	1 cut(s)	483
BcoDI	GTCTC	3 cut(s)	205, 247, 337
BfaI	CTAG	2 cut(s)	72, 131
BglII	AGATCT	1 cut(s)	192
BisI	GCNGC	1 cut(s)	357
BlsI	GCNGC	1 cut(s)	358
Bme1390I	CCNGG	2 cut(s)	343, 392
Bme18I	GGWCC	1 cut(s)	394
BmgT120I	GGNCC	2 cut(s)	226, 394
BmiI	GGNNCC	3 cut(s)	106, 235, 340
BmrFI	CCNGG	2 cut(s)	343, 392
BpiI	GAAGAC	1 cut(s)	151
BpmI	CTGGAG	2 cut(s)	220, 325
BpuEI	CTTGAG	1 cut(s)	206
BsaBI	GATNNNNATC	1 cut(s)	474
BsaHI	GRCGYC	2 cut(s)	174, 372
BsaI	GGTCTC	1 cut(s)	337
BsaJI	CCNNGG	2 cut(s)	229, 342
BsaWI	WCCGGW	1 cut(s)	491
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 77, 342, 412
Bse8I	GATNNNNATC	1 cut(s)	474
BseBI	CCWGG	2 cut(s)	343, 392
BseDI	CCNNGG	2 cut(s)	229, 342
BseGI	GGATG	1 cut(s)	486
BseJI	GATNNNNATC	1 cut(s)	474
BseLI	CCNNNNNNNGG	4 cut(s)	66, 77, 342, 412
Bsh1236I	CGCG	2 cut(s)	291, 369
Bsh1285I	CGRYCG	1 cut(s)	289
BshFI	GGCC	4 cut(s)	70, 227, 405, 416
BsiEI	CGRYCG	1 cut(s)	289
BsiHKAI	GWGCWC	3 cut(s)	210, 426, 438
BsiSI	CCGG	2 cut(s)	336, 492
BslFI	GGGAC	1 cut(s)	359
BslI	CCNNNNNNNGG	4 cut(s)	66, 77, 342, 412
BsmAI	GTCTC	3 cut(s)	205, 247, 337
BsmBI	CGTCTC	2 cut(s)	205, 247
BsmFI	GGGAC	1 cut(s)	359
BsnI	GGCC	4 cut(s)	70, 227, 405, 416
Bso31I	GGTCTC	1 cut(s)	337
Bsp1286I	GDGCHC	3 cut(s)	210, 426, 438
Bsp143I	GATC	4 cut(s)	192, 274, 379, 483
Bsp68I	TCGCGA	1 cut(s)	369
BspACI	CCGC	3 cut(s)	289, 357, 397
BspANI	GGCC	4 cut(s)	70, 227, 405, 416
BspFNI	CGCG	2 cut(s)	291, 369
BspHI	TCATGA	1 cut(s)	48
BspLI	GGNNCC	3 cut(s)	106, 235, 340
BspTNI	GGTCTC	1 cut(s)	337
BssECI	CCNNGG	2 cut(s)	229, 342
BssMI	GATC	4 cut(s)	192, 274, 379, 483
BssNI	GRCGYC	2 cut(s)	174, 372
Bst2UI	CCWGG	2 cut(s)	343, 392
BstACI	GRCGYC	2 cut(s)	174, 372
BstF5I	GGATG	1 cut(s)	486
BstFNI	CGCG	2 cut(s)	291, 369
BstKTI	GATC	4 cut(s)	195, 277, 382, 486
BstMAI	GTCTC	3 cut(s)	205, 247, 337
BstMBI	GATC	4 cut(s)	192, 274, 379, 483
BstMCI	CGRYCG	1 cut(s)	289
BstNI	CCWGG	2 cut(s)	343, 392
BstNSI	RCATGY	1 cut(s)	220
BstSCI	CCNGG	2 cut(s)	341, 390
BstUI	CGCG	2 cut(s)	291, 369
BstV2I	GAAGAC	1 cut(s)	151
BstX2I	RGATCY	1 cut(s)	192
BstYI	RGATCY	1 cut(s)	192
BsuRI	GGCC	4 cut(s)	70, 227, 405, 416
BtsCI	GGATG	1 cut(s)	486
BtuMI	TCGCGA	1 cut(s)	369
CciI	TCATGA	1 cut(s)	48
Cfr13I	GGNCC	2 cut(s)	226, 394
CseI	GACGC	3 cut(s)	182, 229, 380
CviAII	CATG	4 cut(s)	44, 49, 217, 268
DpnI	GATC	4 cut(s)	194, 276, 381, 485
DpnII	GATC	4 cut(s)	192, 274, 379, 483
EaeI	YGGCCR	1 cut(s)	414
Ecl136II	GAGCTC	2 cut(s)	208, 424
Eco147I	AGGCCT	1 cut(s)	70
Eco24I	GRGCYC	2 cut(s)	210, 426
Eco31I	GGTCTC	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	394
Eco53kI	GAGCTC	2 cut(s)	208, 424
Eco57I	CTGAAG	1 cut(s)	242
EcoICRI	GAGCTC	2 cut(s)	208, 424
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRII	CCWGG	2 cut(s)	341, 390
EcoT38I	GRGCYC	2 cut(s)	210, 426
Esp3I	CGTCTC	2 cut(s)	205, 247
FaeI	CATG	4 cut(s)	47, 52, 220, 271
FaiI	YATR	4 cut(s)	45, 50, 218, 269
FaqI	GGGAC	1 cut(s)	359
FatI	CATG	4 cut(s)	43, 48, 216, 267
FbaI	TGATCA	1 cut(s)	483
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	1 cut(s)	357
FokI	GGATG	1 cut(s)	493
FriOI	GRGCYC	2 cut(s)	210, 426
Fsp4HI	GCNGC	1 cut(s)	357
FspBI	CTAG	2 cut(s)	72, 131
GluI	GCNGC	1 cut(s)	357
GsuI	CTGGAG	2 cut(s)	220, 325
HaeIII	GGCC	4 cut(s)	70, 227, 405, 416
HapII	CCGG	2 cut(s)	336, 492
HgaI	GACGC	3 cut(s)	182, 229, 380
Hin1I	GRCGYC	2 cut(s)	174, 372
Hin1II	CATG	4 cut(s)	47, 52, 220, 271
HincII	GTYRAC	2 cut(s)	100, 121
HindII	GTYRAC	2 cut(s)	100, 121
HindIII	AAGCTT	1 cut(s)	166
HinfI	GANTC	2 cut(s)	52, 156
HpaI	GTTAAC	1 cut(s)	100
HpaII	CCGG	2 cut(s)	336, 492
HphI	GGTGA	2 cut(s)	130, 194
Hpy166II	GTNNAC	2 cut(s)	100, 121
Hpy188I	TCNGA	5 cut(s)	57, 153, 205, 480, 503
Hpy188III	TCNNGA	3 cut(s)	49, 278, 368
Hpy8I	GTNNAC	2 cut(s)	100, 121
Hpy99I	CGWCG	5 cut(s)	122, 146, 176, 296, 374
HpyAV	CCTTC	2 cut(s)	334, 385
HpyCH4V	TGCA	1 cut(s)	474
Hsp92I	GRCGYC	2 cut(s)	174, 372
Hsp92II	CATG	4 cut(s)	47, 52, 220, 271
Ksp22I	TGATCA	1 cut(s)	483
KspAI	GTTAAC	1 cut(s)	100
Kzo9I	GATC	4 cut(s)	192, 274, 379, 483
LmnI	GCTCC	3 cut(s)	239, 344, 429
LpnPI	CCDG	9 cut(s)	52, 67, 250, 313, 328, 349, 355, 377, 404
MaeI	CTAG	2 cut(s)	72, 131
MaeIII	GTNAC	3 cut(s)	62, 136, 182
MalI	GATC	4 cut(s)	194, 276, 381, 485
MboI	GATC	4 cut(s)	192, 274, 379, 483
MboII	GAAGA	2 cut(s)	151, 479
MflI	RGATCY	1 cut(s)	192
MhlI	GDGCHC	3 cut(s)	210, 426, 438
MlyI	GAGTC	1 cut(s)	165
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	6 cut(s)	7, 118, 239, 317, 416, 473
MseI	TTAA	1 cut(s)	99
MspI	CCGG	2 cut(s)	336, 492
MspR9I	CCNGG	2 cut(s)	343, 392
MvaI	CCWGG	2 cut(s)	343, 392
MvnI	CGCG	2 cut(s)	291, 369
NdeII	GATC	4 cut(s)	192, 274, 379, 483
NlaIII	CATG	4 cut(s)	47, 52, 220, 271
NlaIV	GGNNCC	3 cut(s)	106, 235, 340
NmeAIII	GCCGAG	4 cut(s)	189, 210, 385, 392
NmuCI	GTSAC	3 cut(s)	62, 136, 182
NruI	TCGCGA	1 cut(s)	369
NspI	RCATGY	1 cut(s)	220
PagI	TCATGA	1 cut(s)	48
PceI	AGGCCT	1 cut(s)	70
PcsI	WCGNNNNNNNCGW	2 cut(s)	237, 384
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	1 cut(s)	358
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
Psp124BI	GAGCTC	2 cut(s)	210, 426
Psp6I	CCWGG	2 cut(s)	341, 390
PspGI	CCWGG	2 cut(s)	341, 390
PspN4I	GGNNCC	3 cut(s)	106, 235, 340
PspPI	GGNCC	2 cut(s)	226, 394
PsuI	RGATCY	1 cut(s)	192
RruI	TCGCGA	1 cut(s)	369
SacI	GAGCTC	2 cut(s)	210, 426
SalI	GTCGAC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	1 cut(s)	357
Sau3AI	GATC	4 cut(s)	192, 274, 379, 483
Sau96I	GGNCC	2 cut(s)	226, 394
SchI	GAGTC	1 cut(s)	165
ScrFI	CCNGG	2 cut(s)	343, 392
SduI	GDGCHC	3 cut(s)	210, 426, 438
SetI	ASST	9 cut(s)	11, 41, 110, 132, 170, 210, 258, 366, 426
SinI	GGWCC	1 cut(s)	394
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
SseBI	AGGCCT	1 cut(s)	70
SsiI	CCGC	3 cut(s)	289, 357, 397
SspMI	CTAG	2 cut(s)	72, 131
SstI	GAGCTC	2 cut(s)	210, 426
StuI	AGGCCT	1 cut(s)	70
StyD4I	CCNGG	2 cut(s)	341, 390
TaqI	TCGA	7 cut(s)	33, 120, 171, 279, 309, 378, 465
TauI	GCSGC	1 cut(s)	359
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TseFI	GTSAC	3 cut(s)	62, 136, 182
Tsp45I	GTSAC	3 cut(s)	62, 136, 182
TspDTI	ATGAA	1 cut(s)	65
TspGWI	ACGGA	3 cut(s)	106, 117, 187
VpaK11BI	GGWCC	1 cut(s)	394
XceI	RCATGY	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	120
XspI	CTAG	2 cut(s)	72, 131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.