Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007579

Physical Location & Seq

Genomic Coordinates Forward (+)

20873761 .. 20874402

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G199600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGCAAAAGCTGAAGAAGTCTGAAGTCGACTCTTGCTATGGTGGTGGCGACGTCACCAAAGCAGCCGAATCGTCTTCTACGCCAAAAACGCCGATAGAGCTGGCTATTGATTCCATCCTGCACGATTTTGAGATGCCAGAAGGATCAAGGACCTGGTATCAGAGCGATCTCGACGATCTCGACACCGACCGCGACGGCTTCATTTGCCTCGACGAGTTCAACGCCTTCTGGGTCTCCGGCTCCAAAGACGGTGACGCTGCCGAGCTTCGCGACGCCTTCGATCTCTACGACCAGGACCGCAACGGCCTCATCTCGGCCAACGAGCTCCATTTGGTGCTCAATCAACTTCAAATGACTTGCAGCCTCGAAAATTGCAATCGGATGATCAAGACCATTGATGCTGACGGCGACGGGAATGTGAATTTCGAGGAGTTCAAGAAGATGATGGGCAACAACGCCAGTACC

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

155

Amino Acids

17.26

Weight (kDa)

4.23

Isoelectric Point (pI)

32.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18210 AT1G18210 AT1G73630
fragaria_vesca	FvH4_5g17240
malus_domestica	MD03G1137400.v1.1 MD06G1216800.v1.1 MD06G1231000.v1.1 MD13G1184700.v1.1
prunus_persica	Prupe.1G192900_v2.0.a1 Prupe.3G199600_v2.0.a1 Prupe.5G232300_v2.0.a1 Prupe.7G023700_v2.0.a1
pyrus_communis	pycom14g19650 pycom14g19660
rosa_chinensis	RchiOBHm_Chr7g0178551
rosa_laevigata	RLG00000005438
rosa_multiflora	Rmu_co8293555.1_g000001 Rmu_sc0012505.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274820
rosa_rugosa	Rorug06G0417900
rosa_samantha	Rh7AG016500 Rh7BG016000 Rh7DG016600
rosa_wichuraiana	Rw7G001310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	54
AccI	GTMKAC	1 cut(s)	27
AccII	CGCG	2 cut(s)	192, 270
AciI	CCGC	2 cut(s)	190, 298
AclWI	GGATC	1 cut(s)	151
AcoI	YGGCCR	1 cut(s)	315
AcsI	RAATTY	1 cut(s)	421
AcuI	CTGAAG	2 cut(s)	32, 42
AcyI	GRCGYC	2 cut(s)	51, 273
AfaI	GTAC	1 cut(s)	463
AfiI	CCNNNNNNNGG	1 cut(s)	313
AgsI	TTSAA	3 cut(s)	220, 350, 436
AjnI	CCWGG	2 cut(s)	152, 291
AluBI	AGCT	4 cut(s)	10, 100, 265, 325
AluI	AGCT	4 cut(s)	10, 100, 265, 325
Alw21I	GWGCWC	2 cut(s)	327, 339
Alw26I	GTCTC	1 cut(s)	238
AlwI	GGATC	1 cut(s)	151
AoxI	GGCC	2 cut(s)	304, 315
ApeKI	GCWGC	3 cut(s)	62, 257, 360
ApoI	RAATTY	1 cut(s)	421
AspS9I	GGNCC	2 cut(s)	150, 295
AsuHPI	GGTGA	2 cut(s)	46, 263
AvaII	GGWCC	2 cut(s)	150, 295
BaeI	ACNNNNGTAYC	1 cut(s)	445
BanII	GRGCYC	1 cut(s)	327
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	2 cut(s)	327, 339
BbvI	GCAGC	3 cut(s)	74, 244, 372
BccI	CCATC	2 cut(s)	122, 439
BceAI	ACGGC	3 cut(s)	211, 319, 421
BcgI	CGANNNNNNTGC	2 cut(s)	51, 85
BciT130I	CCWGG	2 cut(s)	154, 293
BclI	TGATCA	1 cut(s)	384
BcoDI	GTCTC	1 cut(s)	238
BisI	GCNGC	3 cut(s)	63, 258, 361
BlsI	GCNGC	3 cut(s)	64, 259, 362
Bme1390I	CCNGG	2 cut(s)	154, 293
Bme18I	GGWCC	2 cut(s)	150, 295
BmgT120I	GGNCC	2 cut(s)	150, 295
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	2 cut(s)	154, 293
BmsI	GCATC	2 cut(s)	123, 388
BpiI	GAAGAC	1 cut(s)	66
BsaHI	GRCGYC	2 cut(s)	51, 273
BsaI	GGTCTC	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse1I	ACTGG	1 cut(s)	459
BseBI	CCWGG	2 cut(s)	154, 293
BseGI	GGATG	2 cut(s)	114, 387
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseNI	ACTGG	1 cut(s)	459
BseRI	GAGGAG	1 cut(s)	443
BseXI	GCAGC	3 cut(s)	74, 244, 372
BsgI	GTGCAG	1 cut(s)	104
Bsh1236I	CGCG	2 cut(s)	192, 270
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	2 cut(s)	306, 317
BsiEI	CGRYCG	1 cut(s)	190
BsiHKAI	GWGCWC	2 cut(s)	327, 339
BsiSI	CCGG	1 cut(s)	237
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmAI	GTCTC	1 cut(s)	238
BsnI	GGCC	2 cut(s)	306, 317
Bso31I	GGTCTC	1 cut(s)	238
Bsp1286I	GDGCHC	2 cut(s)	327, 339
Bsp143I	GATC	5 cut(s)	143, 166, 175, 280, 384
Bsp68I	TCGCGA	1 cut(s)	270
BspACI	CCGC	2 cut(s)	190, 298
BspANI	GGCC	2 cut(s)	306, 317
BspFNI	CGCG	2 cut(s)	192, 270
BspLI	GGNNCC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	151
BspTNI	GGTCTC	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	459
BssMI	GATC	5 cut(s)	143, 166, 175, 280, 384
BssNI	GRCGYC	2 cut(s)	51, 273
Bst2UI	CCWGG	2 cut(s)	154, 293
Bst4CI	ACNGT	1 cut(s)	251
BstACI	GRCGYC	2 cut(s)	51, 273
BstC8I	GCNNGC	1 cut(s)	102
BstF5I	GGATG	2 cut(s)	114, 387
BstFNI	CGCG	2 cut(s)	192, 270
BstKTI	GATC	5 cut(s)	146, 169, 178, 283, 387
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	5 cut(s)	143, 166, 175, 280, 384
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 97, 204
BstNI	CCWGG	2 cut(s)	154, 293
BstSCI	CCNGG	2 cut(s)	152, 291
BstUI	CGCG	2 cut(s)	192, 270
BstV1I	GCAGC	3 cut(s)	74, 244, 372
BstV2I	GAAGAC	1 cut(s)	66
BsuRI	GGCC	2 cut(s)	306, 317
BtsCI	GGATG	2 cut(s)	114, 387
BtuMI	TCGCGA	1 cut(s)	270
Cac8I	GCNNGC	1 cut(s)	102
Cfr13I	GGNCC	2 cut(s)	150, 295
CseI	GACGC	2 cut(s)	263, 281
CsiI	ACCWGGT	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	462
CviQI	GTAC	1 cut(s)	462
DpnI	GATC	5 cut(s)	145, 168, 177, 282, 386
DpnII	GATC	5 cut(s)	143, 166, 175, 280, 384
EaeI	YGGCCR	1 cut(s)	315
Ecl136II	GAGCTC	1 cut(s)	325
Eco24I	GRGCYC	1 cut(s)	327
Eco31I	GGTCTC	1 cut(s)	238
Eco47I	GGWCC	2 cut(s)	150, 295
Eco53kI	GAGCTC	1 cut(s)	325
Eco57I	CTGAAG	2 cut(s)	32, 42
EcoICRI	GAGCTC	1 cut(s)	325
EcoO109I	RGGNCCY	1 cut(s)	150
EcoRII	CCWGG	2 cut(s)	152, 291
EcoT38I	GRGCYC	1 cut(s)	327
FaiI	YATR	1 cut(s)	39
FbaI	TGATCA	1 cut(s)	384
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	3 cut(s)	63, 258, 361
FokI	GGATG	2 cut(s)	101, 394
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	3 cut(s)	63, 258, 361
GluI	GCNGC	3 cut(s)	63, 258, 361
HaeIII	GGCC	2 cut(s)	306, 317
HapII	CCGG	1 cut(s)	237
HgaI	GACGC	2 cut(s)	263, 281
Hin1I	GRCGYC	2 cut(s)	51, 273
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HinfI	GANTC	3 cut(s)	29, 68, 110
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	2 cut(s)	46, 263
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	3 cut(s)	22, 162, 381
Hpy188III	TCNNGA	5 cut(s)	170, 179, 269, 388, 436
Hpy8I	GTNNAC	1 cut(s)	28
Hpy99I	CGWCG	6 cut(s)	53, 176, 197, 215, 275, 413
HpyAV	CCTTC	3 cut(s)	134, 235, 286
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	4 cut(s)	4, 121, 360, 375
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 97, 204
HpySE526I	ACGT	1 cut(s)	51
Hsp92I	GRCGYC	2 cut(s)	51, 273
Ksp22I	TGATCA	1 cut(s)	384
Kzo9I	GATC	5 cut(s)	143, 166, 175, 280, 384
LmnI	GCTCC	2 cut(s)	245, 330
LpnPI	CCDG	9 cut(s)	86, 131, 139, 150, 166, 214, 250, 278, 305
Lsp1109I	GCAGC	3 cut(s)	74, 244, 372
LweI	GCATC	2 cut(s)	123, 388
MabI	ACCWGGT	1 cut(s)	152
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	2 cut(s)	52, 251
MalI	GATC	5 cut(s)	145, 168, 177, 282, 386
MboI	GATC	5 cut(s)	143, 166, 175, 280, 384
MboII	GAAGA	3 cut(s)	25, 66, 451
MhlI	GDGCHC	2 cut(s)	327, 339
MluCI	AATT	2 cut(s)	370, 421
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	4 cut(s)	218, 317, 374, 421
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	2 cut(s)	154, 293
MvaI	CCWGG	2 cut(s)	154, 293
MvnI	CGCG	2 cut(s)	192, 270
MwoI	GCNNNNNNNGC	3 cut(s)	88, 97, 204
NdeII	GATC	5 cut(s)	143, 166, 175, 280, 384
NlaIV	GGNNCC	1 cut(s)	241
NmeAIII	GCCGAG	2 cut(s)	286, 293
NmuCI	GTSAC	2 cut(s)	52, 251
NruI	TCGCGA	1 cut(s)	270
PcsI	WCGNNNNNNNCGW	2 cut(s)	177, 285
PfeI	GAWTC	2 cut(s)	68, 110
PkrI	GCNGC	3 cut(s)	64, 259, 362
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PpuMI	RGGWCCY	1 cut(s)	150
Psp124BI	GAGCTC	1 cut(s)	327
Psp5II	RGGWCCY	1 cut(s)	150
Psp6I	CCWGG	2 cut(s)	152, 291
PspGI	CCWGG	2 cut(s)	152, 291
PspN4I	GGNNCC	1 cut(s)	241
PspPI	GGNCC	2 cut(s)	150, 295
PspPPI	RGGWCCY	1 cut(s)	150
RruI	TCGCGA	1 cut(s)	270
RsaI	GTAC	1 cut(s)	463
RsaNI	GTAC	1 cut(s)	462
SacI	GAGCTC	1 cut(s)	327
SalI	GTCGAC	1 cut(s)	26
SatI	GCNGC	3 cut(s)	63, 258, 361
Sau3AI	GATC	5 cut(s)	143, 166, 175, 280, 384
Sau96I	GGNCC	2 cut(s)	150, 295
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	2 cut(s)	154, 293
SduI	GDGCHC	2 cut(s)	327, 339
SetI	ASST	6 cut(s)	12, 54, 102, 155, 267, 327
SexAI	ACCWGGT	1 cut(s)	152
SfaNI	GCATC	2 cut(s)	123, 388
SinI	GGWCC	2 cut(s)	150, 295
Sse9I	AATT	2 cut(s)	370, 421
SsiI	CCGC	2 cut(s)	190, 298
SstI	GAGCTC	1 cut(s)	327
StyD4I	CCNGG	2 cut(s)	152, 291
TaaI	ACNGT	1 cut(s)	251
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	7 cut(s)	27, 171, 180, 210, 279, 366, 426
TasI	AATT	2 cut(s)	370, 421
TfiI	GAWTC	2 cut(s)	68, 110
TseFI	GTSAC	2 cut(s)	52, 251
TseI	GCWGC	3 cut(s)	62, 257, 360
Tsp45I	GTSAC	2 cut(s)	52, 251
TspDTI	ATGAA	1 cut(s)	190
VpaK11BI	GGWCC	2 cut(s)	150, 295
XapI	RAATTY	1 cut(s)	421
XmiI	GTMKAC	1 cut(s)	27
ZraI	GACGTC	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.