Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007579

Physical Location & Seq

Genomic Coordinates Reverse (-)

17686526 .. 17688673

Gene Structure 2148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G232300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCAACCAACGGAACCCCAAGCCCAGCCCAAGCCCCAAAATCCGTCGACGCCAAGCCAGTTGTCACCGACGAGGTTCAGAGAGTCTTCAAAAGCTTCGACGCCAATGGTGACGGCAAGATCTCCGTCTCCGAGCTCGGCAACGTGCTCAAGGCCCTCGGCTCCAGCGTCTCTGCCGATGAGCTTCAGCGTGTCATGGGCGATCTCGACACCGACCGCGACGGCTTCATTTGCCTCGACGAGTTCAACGCCTTCTGGGTCTCCGGCTCCAAGGACGGCAACGCAGCCGAGCTTCGCGACGCCTTCGATCTCTACGACCAGGACCGCAACGGCCTCATCTCGGCCAACGAGCTCCATATGGTGCTCAATCAACTCCAAATGACTTGCAGCCTCGAAGATTGCAATCGGATGATCAAGTCCGTTGATGCTGACGGCGATGGGAATGTGAATTTCGAGGAGTTCAAGAAGATGATGGGCAACAACGCCAGTACCGTTAGCAACACCAACGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

171

Amino Acids

18.35

Weight (kDa)

4.32

Isoelectric Point (pI)

16.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18210 AT1G18210 AT1G73630
fragaria_vesca	FvH4_5g17240
malus_domestica	MD03G1137400.v1.1 MD06G1216800.v1.1 MD06G1231000.v1.1 MD13G1184700.v1.1
prunus_persica	Prupe.1G192900_v2.0.a1 Prupe.3G199600_v2.0.a1 Prupe.5G232300_v2.0.a1 Prupe.7G023700_v2.0.a1
pyrus_communis	pycom14g19650 pycom14g19660
rosa_chinensis	RchiOBHm_Chr7g0178551
rosa_laevigata	RLG00000005438
rosa_multiflora	Rmu_co8293555.1_g000001 Rmu_sc0012505.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274820
rosa_rugosa	Rorug06G0417900
rosa_samantha	Rh7AG016500 Rh7BG016000 Rh7DG016600
rosa_wichuraiana	Rw7G001310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	48
AccII	CGCG	2 cut(s)	219, 297
AciI	CCGC	2 cut(s)	217, 325
AcoI	YGGCCR	1 cut(s)	342
AcsI	RAATTY	1 cut(s)	448
AcuI	CTGAAG	1 cut(s)	170
AcyI	GRCGYC	3 cut(s)	51, 102, 300
AfaI	GTAC	1 cut(s)	490
AfiI	CCNNNNNNNGG	1 cut(s)	340
AgsI	TTSAA	3 cut(s)	91, 247, 463
AjnI	CCWGG	1 cut(s)	318
AluBI	AGCT	5 cut(s)	96, 136, 184, 292, 352
AluI	AGCT	5 cut(s)	96, 136, 184, 292, 352
Alw21I	GWGCWC	4 cut(s)	138, 150, 354, 366
Alw26I	GTCTC	3 cut(s)	133, 175, 265
AoxI	GGCC	3 cut(s)	153, 331, 342
ApeKI	GCWGC	2 cut(s)	284, 387
ApoI	RAATTY	1 cut(s)	448
AspS9I	GGNCC	2 cut(s)	154, 322
AsuHPI	GGTGA	2 cut(s)	58, 122
AvaII	GGWCC	1 cut(s)	322
BaeI	ACNNNNGTAYC	2 cut(s)	472, 505
BanII	GRGCYC	2 cut(s)	138, 354
BbsI	GAAGAC	1 cut(s)	79
Bbv12I	GWGCWC	4 cut(s)	138, 150, 354, 366
BbvI	GCAGC	2 cut(s)	296, 399
BccI	CCATC	2 cut(s)	431, 466
BceAI	ACGGC	5 cut(s)	130, 238, 292, 346, 448
BciT130I	CCWGG	1 cut(s)	320
BclI	TGATCA	1 cut(s)	411
BcoDI	GTCTC	3 cut(s)	133, 175, 265
BfaI	CTAG	1 cut(s)	511
BglII	AGATCT	1 cut(s)	120
BisI	GCNGC	2 cut(s)	285, 388
BlsI	GCNGC	2 cut(s)	286, 389
Bme1390I	CCNGG	1 cut(s)	320
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	2 cut(s)	154, 322
BmiI	GGNNCC	3 cut(s)	16, 163, 268
BmrFI	CCNGG	1 cut(s)	320
BmsI	GCATC	1 cut(s)	415
BpiI	GAAGAC	1 cut(s)	79
BpmI	CTGGAG	1 cut(s)	148
BpuEI	CTTGAG	1 cut(s)	134
BsaBI	GATNNNNATC	1 cut(s)	402
BsaHI	GRCGYC	3 cut(s)	51, 102, 300
BsaI	GGTCTC	1 cut(s)	265
BsaJI	CCNNGG	2 cut(s)	157, 270
Bsc4I	CCNNNNNNNGG	1 cut(s)	340
Bse1I	ACTGG	2 cut(s)	59, 486
Bse8I	GATNNNNATC	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	320
BseDI	CCNNGG	2 cut(s)	157, 270
BseGI	GGATG	1 cut(s)	414
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	1 cut(s)	340
BseNI	ACTGG	2 cut(s)	59, 486
BseRI	GAGGAG	1 cut(s)	470
BseXI	GCAGC	2 cut(s)	296, 399
BseYI	CCCAGC	1 cut(s)	25
Bsh1236I	CGCG	2 cut(s)	219, 297
Bsh1285I	CGRYCG	1 cut(s)	217
BshFI	GGCC	3 cut(s)	155, 333, 344
BsiEI	CGRYCG	1 cut(s)	217
BsiHKAI	GWGCWC	4 cut(s)	138, 150, 354, 366
BsiSI	CCGG	1 cut(s)	264
BslI	CCNNNNNNNGG	1 cut(s)	340
BsmAI	GTCTC	3 cut(s)	133, 175, 265
BsmBI	CGTCTC	2 cut(s)	133, 175
BsnI	GGCC	3 cut(s)	155, 333, 344
Bso31I	GGTCTC	1 cut(s)	265
Bsp1286I	GDGCHC	4 cut(s)	138, 150, 354, 366
Bsp143I	GATC	4 cut(s)	120, 202, 307, 411
Bsp68I	TCGCGA	1 cut(s)	297
BspACI	CCGC	2 cut(s)	217, 325
BspANI	GGCC	3 cut(s)	155, 333, 344
BspFNI	CGCG	2 cut(s)	219, 297
BspLI	GGNNCC	3 cut(s)	16, 163, 268
BspTNI	GGTCTC	1 cut(s)	265
BsrI	ACTGG	2 cut(s)	59, 486
BssECI	CCNNGG	2 cut(s)	157, 270
BssMI	GATC	4 cut(s)	120, 202, 307, 411
BssNI	GRCGYC	3 cut(s)	51, 102, 300
BssT1I	CCWWGG	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	320
Bst4CI	ACNGT	1 cut(s)	493
BstACI	GRCGYC	3 cut(s)	51, 102, 300
BstF5I	GGATG	1 cut(s)	414
BstFNI	CGCG	2 cut(s)	219, 297
BstKTI	GATC	4 cut(s)	123, 205, 310, 414
BstMAI	GTCTC	3 cut(s)	133, 175, 265
BstMBI	GATC	4 cut(s)	120, 202, 307, 411
BstMCI	CGRYCG	1 cut(s)	217
BstMWI	GCNNNNNNNGC	1 cut(s)	231
BstNI	CCWGG	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	318
BstUI	CGCG	2 cut(s)	219, 297
BstV1I	GCAGC	2 cut(s)	296, 399
BstV2I	GAAGAC	1 cut(s)	79
BstX2I	RGATCY	1 cut(s)	120
BstYI	RGATCY	1 cut(s)	120
BsuRI	GGCC	3 cut(s)	155, 333, 344
BtgZI	GCGATG	1 cut(s)	450
BtsCI	GGATG	1 cut(s)	414
BtuMI	TCGCGA	1 cut(s)	297
Cfr13I	GGNCC	2 cut(s)	154, 322
CseI	GACGC	4 cut(s)	59, 110, 157, 308
Csp6I	GTAC	1 cut(s)	489
CviAII	CATG	1 cut(s)	196
CviQI	GTAC	1 cut(s)	489
DpnI	GATC	4 cut(s)	122, 204, 309, 413
DpnII	GATC	4 cut(s)	120, 202, 307, 411
EaeI	YGGCCR	1 cut(s)	342
Ecl136II	GAGCTC	2 cut(s)	136, 352
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	2 cut(s)	138, 354
Eco31I	GGTCTC	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	322
Eco53kI	GAGCTC	2 cut(s)	136, 352
Eco57I	CTGAAG	1 cut(s)	170
EcoICRI	GAGCTC	2 cut(s)	136, 352
EcoO109I	RGGNCCY	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	270
EcoT38I	GRGCYC	2 cut(s)	138, 354
ErhI	CCWWGG	1 cut(s)	270
Esp3I	CGTCTC	2 cut(s)	133, 175
FaeI	CATG	1 cut(s)	199
FaiI	YATR	3 cut(s)	197, 357, 359
FatI	CATG	1 cut(s)	195
FauNDI	CATATG	1 cut(s)	357
FbaI	TGATCA	1 cut(s)	411
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	2 cut(s)	285, 388
FokI	GGATG	1 cut(s)	421
FriOI	GRGCYC	2 cut(s)	138, 354
Fsp4HI	GCNGC	2 cut(s)	285, 388
FspBI	CTAG	1 cut(s)	511
GluI	GCNGC	2 cut(s)	285, 388
GsaI	CCCAGC	1 cut(s)	29
GsuI	CTGGAG	1 cut(s)	148
HaeIII	GGCC	3 cut(s)	155, 333, 344
HapII	CCGG	1 cut(s)	264
HgaI	GACGC	4 cut(s)	59, 110, 157, 308
Hin1I	GRCGYC	3 cut(s)	51, 102, 300
Hin1II	CATG	1 cut(s)	199
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HindIII	AAGCTT	1 cut(s)	94
HinfI	GANTC	1 cut(s)	84
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	2 cut(s)	58, 122
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	3 cut(s)	81, 133, 408
Hpy188III	TCNNGA	3 cut(s)	206, 296, 463
Hpy8I	GTNNAC	1 cut(s)	49
Hpy99I	CGWCG	7 cut(s)	50, 53, 74, 104, 224, 242, 302
HpyAV	CCTTC	2 cut(s)	262, 313
HpyCH4III	ACNGT	1 cut(s)	493
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	2 cut(s)	387, 402
HpyF10VI	GCNNNNNNNGC	1 cut(s)	231
HpySE526I	ACGT	1 cut(s)	144
Hsp92I	GRCGYC	3 cut(s)	51, 102, 300
Hsp92II	CATG	1 cut(s)	199
Ksp22I	TGATCA	1 cut(s)	411
Kzo9I	GATC	4 cut(s)	120, 202, 307, 411
LmnI	GCTCC	3 cut(s)	167, 272, 357
LpnPI	CCDG	8 cut(s)	39, 72, 178, 241, 277, 305, 332, 499
Lsp1109I	GCAGC	2 cut(s)	296, 399
LweI	GCATC	1 cut(s)	415
MaeI	CTAG	1 cut(s)	511
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	2 cut(s)	64, 110
MalI	GATC	4 cut(s)	122, 204, 309, 413
MboI	GATC	4 cut(s)	120, 202, 307, 411
MboII	GAAGA	3 cut(s)	79, 407, 478
MflI	RGATCY	1 cut(s)	120
MhlI	GDGCHC	4 cut(s)	138, 150, 354, 366
MluCI	AATT	1 cut(s)	448
MlyI	GAGTC	1 cut(s)	93
MnlI	CCTC	6 cut(s)	67, 167, 245, 344, 401, 448
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	1 cut(s)	320
MvaI	CCWGG	1 cut(s)	320
MvnI	CGCG	2 cut(s)	219, 297
MwoI	GCNNNNNNNGC	1 cut(s)	231
NdeI	CATATG	1 cut(s)	357
NdeII	GATC	4 cut(s)	120, 202, 307, 411
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	3 cut(s)	16, 163, 268
NmeAIII	GCCGAG	4 cut(s)	117, 138, 313, 320
NmuCI	GTSAC	2 cut(s)	64, 110
NruI	TCGCGA	1 cut(s)	297
PcsI	WCGNNNNNNNCGW	3 cut(s)	165, 312, 489
PkrI	GCNGC	2 cut(s)	286, 389
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
Psp124BI	GAGCTC	2 cut(s)	138, 354
Psp6I	CCWGG	1 cut(s)	318
PspFI	CCCAGC	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	318
PspN4I	GGNNCC	3 cut(s)	16, 163, 268
PspPI	GGNCC	2 cut(s)	154, 322
PsuI	RGATCY	1 cut(s)	120
RruI	TCGCGA	1 cut(s)	297
RsaI	GTAC	1 cut(s)	490
RsaNI	GTAC	1 cut(s)	489
SacI	GAGCTC	2 cut(s)	138, 354
SalI	GTCGAC	1 cut(s)	47
SatI	GCNGC	2 cut(s)	285, 388
Sau3AI	GATC	4 cut(s)	120, 202, 307, 411
Sau96I	GGNCC	2 cut(s)	154, 322
SchI	GAGTC	1 cut(s)	93
ScrFI	CCNGG	1 cut(s)	320
SduI	GDGCHC	4 cut(s)	138, 150, 354, 366
SetI	ASST	7 cut(s)	78, 98, 138, 147, 186, 294, 354
SfaNI	GCATC	1 cut(s)	415
SgrDI	CGTCGACG	1 cut(s)	47
SinI	GGWCC	1 cut(s)	322
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	1 cut(s)	448
SsiI	CCGC	2 cut(s)	217, 325
SspMI	CTAG	1 cut(s)	511
SstI	GAGCTC	2 cut(s)	138, 354
StyD4I	CCNGG	1 cut(s)	318
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	493
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	7 cut(s)	48, 99, 207, 237, 306, 393, 453
TasI	AATT	1 cut(s)	448
TseFI	GTSAC	2 cut(s)	64, 110
TseI	GCWGC	2 cut(s)	284, 387
Tsp45I	GTSAC	2 cut(s)	64, 110
TspDTI	ATGAA	1 cut(s)	217
TspGWI	ACGGA	4 cut(s)	27, 34, 115, 409
VpaK11BI	GGWCC	1 cut(s)	322
XapI	RAATTY	1 cut(s)	448
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.