Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012505.1

Orthogroup ID

OG0007579

Physical Location & Seq

Genomic Coordinates Forward (+)

1017 .. 1517

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012505.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atggcttccaacggaaccccaaccaccgccgtcgccgacgccaaacccgtcgtgaccgacgaggtccgccgcgtcttcaagagcttcgacgccaacggcgacggcaagatctcaacctccgagctcggcaacgtcctcgaggccctcggctccaacgtccccgaggacgagctccagcgcgtgatggtcgacctcgacaccgaccgcgacggcttcatctgcctcgacgagttcaacgccttctgggtggccggcgacggcggctcctccgagctcaaggaggccttcgatctgtacgaccaggaccgcaacggcctcatctccgtcgacgagctccacctcgtcctcaaccggcttcagatgaagtgcaccgtcgaggattgcaaccgcatgatccagtccgttgacgccgacggcgacgggaatgtgaatttcgaggagttcaagaagatgatgaaccacaactccagcagcgccggcaccgtctctaacggcgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

166

Amino Acids

18.03

Weight (kDa)

4.24

Isoelectric Point (pI)

28.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18210 AT1G18210 AT1G73630
fragaria_vesca	FvH4_5g17240
malus_domestica	MD03G1137400.v1.1 MD06G1216800.v1.1 MD06G1231000.v1.1 MD13G1184700.v1.1
prunus_persica	Prupe.1G192900_v2.0.a1 Prupe.3G199600_v2.0.a1 Prupe.5G232300_v2.0.a1 Prupe.7G023700_v2.0.a1
pyrus_communis	pycom14g19650 pycom14g19660
rosa_chinensis	RchiOBHm_Chr7g0178551
rosa_laevigata	RLG00000005438
rosa_multiflora	Rmu_co8293555.1_g000001 Rmu_sc0012505.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274820
rosa_rugosa	Rorug06G0417900
rosa_samantha	Rh7AG016500 Rh7BG016000 Rh7DG016600
rosa_wichuraiana	Rw7G001310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	137
AccB1I	GGYRCC	2 cut(s)	479, 494
AccI	GTMKAC	2 cut(s)	189, 327
AccII	CGCG	3 cut(s)	72, 180, 207
AciI	CCGC	7 cut(s)	27, 67, 70, 205, 261, 307, 388
AclWI	GGATC	1 cut(s)	388
AcoI	YGGCCR	1 cut(s)	249
AcsI	RAATTY	1 cut(s)	430
AcuI	CTGAAG	1 cut(s)	341
AcyI	GRCGYC	4 cut(s)	39, 90, 408, 495
AfaI	GTAC	1 cut(s)	296
AgsI	TTSAA	3 cut(s)	79, 235, 445
AjnI	CCWGG	1 cut(s)	300
AloI	GAACNNNNNNTCC	2 cut(s)	449, 481
AluBI	AGCT	5 cut(s)	84, 124, 172, 274, 334
AluI	AGCT	5 cut(s)	84, 124, 172, 274, 334
Alw21I	GWGCWC	5 cut(s)	126, 174, 276, 336, 371
Alw26I	GTCTC	1 cut(s)	490
Alw44I	GTGCAC	1 cut(s)	367
AlwI	GGATC	1 cut(s)	388
Ama87I	CYCGRG	2 cut(s)	137, 161
AoxI	GGCC	4 cut(s)	141, 249, 282, 313
ApaLI	GTGCAC	1 cut(s)	367
ApeKI	GCWGC	1 cut(s)	471
ApoI	RAATTY	1 cut(s)	430
AspLEI	GCGC	3 cut(s)	180, 476, 497
AspS9I	GGNCC	3 cut(s)	64, 142, 304
AvaI	CYCGRG	2 cut(s)	137, 161
AvaII	GGWCC	2 cut(s)	64, 304
BaeGI	GKGCMC	1 cut(s)	371
BanI	GGYRCC	2 cut(s)	479, 494
BanII	GRGCYC	4 cut(s)	126, 174, 276, 336
BbsI	GAAGAC	1 cut(s)	67
Bbv12I	GWGCWC	5 cut(s)	126, 174, 276, 336, 371
BbvI	GCAGC	1 cut(s)	483
BccI	CCATC	1 cut(s)	178
BceAI	ACGGC	7 cut(s)	14, 112, 118, 226, 274, 328, 430
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BciT130I	CCWGG	1 cut(s)	302
BcoDI	GTCTC	1 cut(s)	490
BfoI	RGCGCY	2 cut(s)	477, 498
BglII	AGATCT	1 cut(s)	108
BisI	GCNGC	3 cut(s)	70, 262, 472
BlsI	GCNGC	3 cut(s)	71, 263, 473
Bme1390I	CCNGG	1 cut(s)	302
Bme18I	GGWCC	2 cut(s)	64, 304
BmeT110I	CYCGRG	2 cut(s)	137, 161
BmgT120I	GGNCC	3 cut(s)	64, 142, 304
BmiI	GGNNCC	5 cut(s)	16, 151, 265, 481, 496
BmrFI	CCNGG	1 cut(s)	302
BpiI	GAAGAC	1 cut(s)	67
BpmI	CTGGAG	2 cut(s)	158, 451
BpuEI	CTTGAG	1 cut(s)	260
BsaHI	GRCGYC	4 cut(s)	39, 90, 408, 495
BsaJI	CCNNGG	2 cut(s)	145, 162
BsaXI	ACNNNNNCTCC	4 cut(s)	248, 278, 449, 479
Bse118I	RCCGGY	3 cut(s)	251, 351, 476
Bse1I	ACTGG	1 cut(s)	397
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	2 cut(s)	145, 162
BseNI	ACTGG	1 cut(s)	397
BseRI	GAGGAG	2 cut(s)	256, 452
BseSI	GKGCMC	1 cut(s)	371
BseXI	GCAGC	1 cut(s)	483
Bsh1236I	CGCG	3 cut(s)	72, 180, 207
Bsh1285I	CGRYCG	1 cut(s)	205
BshFI	GGCC	4 cut(s)	143, 251, 284, 315
BshNI	GGYRCC	2 cut(s)	479, 494
BsiEI	CGRYCG	1 cut(s)	205
BsiHKAI	GWGCWC	5 cut(s)	126, 174, 276, 336, 371
BsiHKCI	CYCGRG	2 cut(s)	137, 161
BsiSI	CCGG	3 cut(s)	252, 352, 477
BslFI	GGGAC	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	490
BsmBI	CGTCTC	1 cut(s)	490
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	4 cut(s)	143, 251, 284, 315
BsoBI	CYCGRG	2 cut(s)	137, 161
Bsp1286I	GDGCHC	5 cut(s)	126, 174, 276, 336, 371
Bsp143I	GATC	3 cut(s)	108, 289, 393
BspACI	CCGC	7 cut(s)	27, 67, 70, 205, 261, 307, 388
BspANI	GGCC	4 cut(s)	143, 251, 284, 315
BspFNI	CGCG	3 cut(s)	72, 180, 207
BspLI	GGNNCC	5 cut(s)	16, 151, 265, 481, 496
BspPI	GGATC	1 cut(s)	388
BspT107I	GGYRCC	2 cut(s)	479, 494
BsrFI	RCCGGY	3 cut(s)	251, 351, 476
BsrI	ACTGG	1 cut(s)	397
BssAI	RCCGGY	3 cut(s)	251, 351, 476
BssECI	CCNNGG	2 cut(s)	145, 162
BssMI	GATC	3 cut(s)	108, 289, 393
BssNI	GRCGYC	4 cut(s)	39, 90, 408, 495
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	2 cut(s)	373, 484
BstACI	GRCGYC	4 cut(s)	39, 90, 408, 495
BstC8I	GCNNGC	2 cut(s)	253, 478
BstFNI	CGCG	3 cut(s)	72, 180, 207
BstH2I	RGCGCY	2 cut(s)	477, 498
BstHHI	GCGC	3 cut(s)	180, 476, 497
BstKTI	GATC	3 cut(s)	111, 292, 396
BstMAI	GTCTC	1 cut(s)	490
BstMBI	GATC	3 cut(s)	108, 289, 393
BstMCI	CGRYCG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	3 cut(s)	219, 261, 477
BstNI	CCWGG	1 cut(s)	302
BstSCI	CCNGG	1 cut(s)	300
BstSLI	GKGCMC	1 cut(s)	371
BstUI	CGCG	3 cut(s)	72, 180, 207
BstV1I	GCAGC	1 cut(s)	483
BstV2I	GAAGAC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	108
BstYI	RGATCY	1 cut(s)	108
BsuRI	GGCC	4 cut(s)	143, 251, 284, 315
Cac8I	GCNNGC	2 cut(s)	253, 478
CfoI	GCGC	3 cut(s)	180, 476, 497
Cfr10I	RCCGGY	3 cut(s)	251, 351, 476
Cfr13I	GGNCC	3 cut(s)	64, 142, 304
CseI	GACGC	4 cut(s)	47, 61, 98, 416
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	1 cut(s)	391
CviQI	GTAC	1 cut(s)	295
DinI	GGCGCC	1 cut(s)	496
DpnI	GATC	3 cut(s)	110, 291, 395
DpnII	GATC	3 cut(s)	108, 289, 393
EaeI	YGGCCR	1 cut(s)	249
EciI	GGCGGA	1 cut(s)	56
Ecl136II	GAGCTC	4 cut(s)	124, 172, 274, 334
Eco147I	AGGCCT	1 cut(s)	284
Eco24I	GRGCYC	4 cut(s)	126, 174, 276, 336
Eco47I	GGWCC	2 cut(s)	64, 304
Eco53kI	GAGCTC	4 cut(s)	124, 172, 274, 334
Eco57I	CTGAAG	1 cut(s)	341
Eco88I	CYCGRG	2 cut(s)	137, 161
EcoICRI	GAGCTC	4 cut(s)	124, 172, 274, 334
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	300
EcoT38I	GRGCYC	4 cut(s)	126, 174, 276, 336
EgeI	GGCGCC	1 cut(s)	496
EheI	GGCGCC	1 cut(s)	496
Esp3I	CGTCTC	1 cut(s)	490
FaeI	CATG	1 cut(s)	394
FaiI	YATR	1 cut(s)	392
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	1 cut(s)	390
FblI	GTMKAC	2 cut(s)	189, 327
Fnu4HI	GCNGC	3 cut(s)	70, 262, 472
FriOI	GRGCYC	4 cut(s)	126, 174, 276, 336
Fsp4HI	GCNGC	3 cut(s)	70, 262, 472
GlaI	GCGC	3 cut(s)	179, 475, 496
GluI	GCNGC	3 cut(s)	70, 262, 472
GsuI	CTGGAG	2 cut(s)	158, 451
HaeII	RGCGCY	2 cut(s)	477, 498
HaeIII	GGCC	4 cut(s)	143, 251, 284, 315
HapII	CCGG	3 cut(s)	252, 352, 477
HgaI	GACGC	4 cut(s)	47, 61, 98, 416
HhaI	GCGC	3 cut(s)	180, 476, 497
Hin1I	GRCGYC	4 cut(s)	39, 90, 408, 495
Hin1II	CATG	1 cut(s)	394
Hin6I	GCGC	3 cut(s)	178, 474, 495
HinP1I	GCGC	3 cut(s)	178, 474, 495
HincII	GTYRAC	3 cut(s)	190, 328, 406
HindII	GTYRAC	3 cut(s)	190, 328, 406
HpaII	CCGG	3 cut(s)	252, 352, 477
Hpy166II	GTNNAC	4 cut(s)	190, 328, 369, 406
Hpy188I	TCNGA	3 cut(s)	121, 271, 360
Hpy188III	TCNNGA	3 cut(s)	52, 79, 445
Hpy8I	GTNNAC	4 cut(s)	190, 328, 369, 406
HpyAV	CCTTC	2 cut(s)	250, 295
HpyCH4III	ACNGT	2 cut(s)	373, 484
HpyCH4IV	ACGT	2 cut(s)	132, 156
HpyCH4V	TGCA	2 cut(s)	369, 384
HpyF10VI	GCNNNNNNNGC	3 cut(s)	219, 261, 477
HpySE526I	ACGT	2 cut(s)	132, 156
Hsp92I	GRCGYC	4 cut(s)	39, 90, 408, 495
Hsp92II	CATG	1 cut(s)	394
HspAI	GCGC	3 cut(s)	178, 474, 495
KasI	GGCGCC	1 cut(s)	494
KroI	GCCGGC	2 cut(s)	251, 476
KroNI	GCCGGC	2 cut(s)	253, 478
Kzo9I	GATC	3 cut(s)	108, 289, 393
LmnI	GCTCC	4 cut(s)	155, 177, 269, 339
LpnPI	CCDG	9 cut(s)	188, 229, 265, 287, 314, 365, 410, 481, 490
Lsp1109I	GCAGC	1 cut(s)	483
MaeII	ACGT	2 cut(s)	132, 156
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	3 cut(s)	110, 291, 395
MboI	GATC	3 cut(s)	108, 289, 393
MboII	GAAGA	2 cut(s)	67, 460
MflI	RGATCY	1 cut(s)	108
MhlI	GDGCHC	5 cut(s)	126, 174, 276, 336, 371
MluCI	AATT	1 cut(s)	430
Mly113I	GGCGCC	1 cut(s)	495
MmeI	TCCRAC	2 cut(s)	33, 177
MroNI	GCCGGC	2 cut(s)	251, 476
MspI	CCGG	3 cut(s)	252, 352, 477
MspR9I	CCNGG	1 cut(s)	302
MvaI	CCWGG	1 cut(s)	302
MvnI	CGCG	3 cut(s)	72, 180, 207
MwoI	GCNNNNNNNGC	3 cut(s)	219, 261, 477
NaeI	GCCGGC	2 cut(s)	253, 478
NarI	GGCGCC	1 cut(s)	495
NdeII	GATC	3 cut(s)	108, 289, 393
NgoMIV	GCCGGC	2 cut(s)	251, 476
NlaIII	CATG	1 cut(s)	394
NlaIV	GGNNCC	5 cut(s)	16, 151, 265, 481, 496
NmeAIII	GCCGAG	2 cut(s)	105, 126
NmuCI	GTSAC	1 cut(s)	52
PaeR7I	CTCGAG	1 cut(s)	137
PceI	AGGCCT	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	6 cut(s)	45, 57, 96, 153, 294, 414
PdiI	GCCGGC	2 cut(s)	253, 478
PflFI	GACNNNGTC	1 cut(s)	62
PkrI	GCNGC	3 cut(s)	71, 263, 473
PluTI	GGCGCC	1 cut(s)	498
Psp124BI	GAGCTC	4 cut(s)	126, 174, 276, 336
Psp6I	CCWGG	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	5 cut(s)	16, 151, 265, 481, 496
PspPI	GGNCC	3 cut(s)	64, 142, 304
PspXI	VCTCGAGB	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	108
PsyI	GACNNNGTC	1 cut(s)	62
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SacI	GAGCTC	4 cut(s)	126, 174, 276, 336
SalI	GTCGAC	2 cut(s)	188, 326
SatI	GCNGC	3 cut(s)	70, 262, 472
Sau3AI	GATC	3 cut(s)	108, 289, 393
Sau96I	GGNCC	3 cut(s)	64, 142, 304
ScrFI	CCNGG	1 cut(s)	302
SduI	GDGCHC	5 cut(s)	126, 174, 276, 336, 371
SfoI	GGCGCC	1 cut(s)	496
Sfr274I	CTCGAG	1 cut(s)	137
SgrDI	CGTCGACG	1 cut(s)	326
SinI	GGWCC	2 cut(s)	64, 304
SlaI	CTCGAG	1 cut(s)	137
SmlI	CTYRAG	2 cut(s)	137, 275
SmoI	CTYRAG	2 cut(s)	137, 275
Sse9I	AATT	1 cut(s)	430
SseBI	AGGCCT	1 cut(s)	284
SsiI	CCGC	7 cut(s)	27, 67, 70, 205, 261, 307, 388
SspDI	GGCGCC	1 cut(s)	494
SstI	GAGCTC	4 cut(s)	126, 174, 276, 336
StuI	AGGCCT	1 cut(s)	284
StyD4I	CCNGG	1 cut(s)	300
TaaI	ACNGT	2 cut(s)	373, 484
TaiI	ACGT	2 cut(s)	135, 159
TaqI	TCGA	9 cut(s)	87, 138, 189, 195, 225, 288, 327, 375, 435
TaqII	GACCGA	1 cut(s)	71
TasI	AATT	1 cut(s)	430
TauI	GCSGC	2 cut(s)	72, 264
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	1 cut(s)	471
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	3 cut(s)	205, 377, 470
TspGWI	ACGGA	3 cut(s)	27, 313, 391
Tth111I	GACNNNGTC	1 cut(s)	62
VneI	GTGCAC	1 cut(s)	367
VpaK11BI	GGWCC	2 cut(s)	64, 304
XapI	RAATTY	1 cut(s)	430
XhoI	CTCGAG	1 cut(s)	137
XmiI	GTMKAC	2 cut(s)	189, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.