Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0007579

Physical Location & Seq

Genomic Coordinates Reverse (-)

20900924 .. 20901475

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g19650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCAACCAATGGACCTCCAACCTCGACCGGCCCCAAACCCGTCGTCACCGACGAGGTCCAGAAGGTCTTCAAAAGCTTCGACGCCAACGGCGATGGCAAGATCTCCGTCAACGAGCTCGGCAACGTCCTCAAGGCCCTCGGCTCCAACGTCTCCGGCGACGAGCTCAAGCGCGTCATGGTCGATCTCGACACCGACAACGATGGCTTCATTTGCCTCGACGAGTTCAACTCCTTCTGGGTCGCCGGCTCCAAGGACGGCGGCGCTGCCGAGCTGAAAGACGCCTCTGATGATCGATCTCTACGACCTGGACCGCAACGGCCTCATCTCCACCAACGAACTCCACCTGGTGCTCAGCCGCCTCAACATGGCCTGCACGGTCGAGGATTGCAACCGGATGATCAAGTCCGTCGATGCCGACGGCGACGGGAATGTGAATTTCGAGGAGTTCAAGAAGATGATGGGACACAGCGTCTCCACCAACTGAACCACCGCCAACCCCGCCGTGTAGTGCCGCCACACGGTAGTCGTCTCTCTCAATCTAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

184

Amino Acids

20.2

Weight (kDa)

8.54

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	19 - 47	1.5e-07	EF hand domain
EF-hand_7	PF13499	19 - 79	3.2e-14	EF-hand domain pair
EF-hand_6	PF13405	20 - 48	5.5e-08	EF-hand domain
EF-hand_5	PF13202	21 - 43	3.7e-07	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18210 AT1G18210 AT1G73630
fragaria_vesca	FvH4_5g17240
malus_domestica	MD03G1137400.v1.1 MD06G1216800.v1.1 MD06G1231000.v1.1 MD13G1184700.v1.1
prunus_persica	Prupe.1G192900_v2.0.a1 Prupe.3G199600_v2.0.a1 Prupe.5G232300_v2.0.a1 Prupe.7G023700_v2.0.a1
pyrus_communis	pycom14g19650 pycom14g19660
rosa_chinensis	RchiOBHm_Chr7g0178551
rosa_laevigata	RLG00000005438
rosa_multiflora	Rmu_co8293555.1_g000001 Rmu_sc0012505.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274820
rosa_rugosa	Rorug06G0417900
rosa_samantha	Rh7AG016500 Rh7BG016000 Rh7DG016600
rosa_wichuraiana	Rw7G001310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	174
AciI	CCGC	6 cut(s)	261, 314, 359, 493, 502, 515
AcsI	RAATTY	1 cut(s)	437
AcyI	GRCGYC	2 cut(s)	84, 282
AdeI	CACNNNGTG	1 cut(s)	350
AfiI	CCNNNNNNNGG	2 cut(s)	368, 521
AgsI	TTSAA	3 cut(s)	73, 229, 452
AhdI	GACNNNNNGTC	1 cut(s)	471
AjnI	CCWGG	2 cut(s)	307, 346
AluBI	AGCT	5 cut(s)	78, 118, 166, 274, 549
AluI	AGCT	5 cut(s)	78, 118, 166, 274, 549
Alw21I	GWGCWC	3 cut(s)	120, 168, 355
Alw26I	GTCTC	3 cut(s)	157, 479, 536
AoxI	GGCC	4 cut(s)	31, 135, 320, 370
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	437
ArsI	GACNNNNNNTTYG	2 cut(s)	30, 62
Asp700I	GAANNNNTTC	1 cut(s)	68
AspLEI	GCGC	2 cut(s)	174, 266
AspS9I	GGNCC	5 cut(s)	14, 32, 58, 136, 311
AsuHPI	GGTGA	1 cut(s)	40
AvaII	GGWCC	3 cut(s)	14, 58, 311
BanII	GRGCYC	2 cut(s)	120, 168
BbsI	GAAGAC	1 cut(s)	61
Bbv12I	GWGCWC	3 cut(s)	120, 168, 355
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	3 cut(s)	89, 197, 455
BceAI	ACGGC	5 cut(s)	106, 274, 335, 437, 489
BciT130I	CCWGG	2 cut(s)	309, 348
BclI	TGATCA	1 cut(s)	400
BcoDI	GTCTC	3 cut(s)	157, 479, 536
BfaI	CTAG	1 cut(s)	543
BfoI	RGCGCY	1 cut(s)	267
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	4 cut(s)	262, 267, 359, 515
BlpI	GCTNAGC	1 cut(s)	354
BlsI	GCNGC	4 cut(s)	263, 268, 360, 516
Bme1390I	CCNGG	2 cut(s)	309, 348
Bme18I	GGWCC	3 cut(s)	14, 58, 311
BmeRI	GACNNNNNGTC	1 cut(s)	471
BmgT120I	GGNCC	5 cut(s)	14, 32, 58, 136, 311
BmiI	GGNNCC	3 cut(s)	34, 145, 250
BmrFI	CCNGG	2 cut(s)	309, 348
BmsI	GCATC	1 cut(s)	404
BpiI	GAAGAC	1 cut(s)	61
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
Bpu1102I	GCTNAGC	1 cut(s)	354
BpuEI	CTTGAG	2 cut(s)	116, 152
Bsa29I	ATCGAT	1 cut(s)	295
BsaHI	GRCGYC	2 cut(s)	84, 282
BsaJI	CCNNGG	2 cut(s)	139, 252
BsaWI	WCCGGW	1 cut(s)	394
BsaXI	ACNNNNNCTCC	2 cut(s)	459, 489
Bsc4I	CCNNNNNNNGG	2 cut(s)	368, 521
Bse118I	RCCGGY	2 cut(s)	29, 245
BseBI	CCWGG	2 cut(s)	309, 348
BseCI	ATCGAT	1 cut(s)	295
BseDI	CCNNGG	2 cut(s)	139, 252
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	2 cut(s)	368, 521
BseMII	CTCAG	1 cut(s)	368
BseRI	GAGGAG	1 cut(s)	459
BseXI	GCAGC	1 cut(s)	253
BsgI	GTGCAG	1 cut(s)	359
Bsh1236I	CGCG	1 cut(s)	174
Bsh1285I	CGRYCG	2 cut(s)	30, 382
BshFI	GGCC	4 cut(s)	33, 137, 322, 372
BshVI	ATCGAT	1 cut(s)	295
BsiEI	CGRYCG	2 cut(s)	30, 382
BsiHKAI	GWGCWC	3 cut(s)	120, 168, 355
BsiSI	CCGG	4 cut(s)	30, 156, 246, 395
BslFI	GGGAC	1 cut(s)	478
BslI	CCNNNNNNNGG	2 cut(s)	368, 521
BsmAI	GTCTC	3 cut(s)	157, 479, 536
BsmBI	CGTCTC	3 cut(s)	157, 479, 536
BsmFI	GGGAC	1 cut(s)	478
BsnI	GGCC	4 cut(s)	33, 137, 322, 372
Bsp1286I	GDGCHC	3 cut(s)	120, 168, 355
Bsp143I	GATC	5 cut(s)	102, 184, 292, 296, 400
Bsp1720I	GCTNAGC	1 cut(s)	354
BspACI	CCGC	6 cut(s)	261, 314, 359, 493, 502, 515
BspANI	GGCC	4 cut(s)	33, 137, 322, 372
BspCNI	CTCAG	1 cut(s)	367
BspDI	ATCGAT	1 cut(s)	295
BspFNI	CGCG	1 cut(s)	174
BspLI	GGNNCC	3 cut(s)	34, 145, 250
BsrFI	RCCGGY	2 cut(s)	29, 245
BssAI	RCCGGY	2 cut(s)	29, 245
BssECI	CCNNGG	2 cut(s)	139, 252
BssMI	GATC	5 cut(s)	102, 184, 292, 296, 400
BssNI	GRCGYC	2 cut(s)	84, 282
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	2 cut(s)	309, 348
Bst4CI	ACNGT	2 cut(s)	380, 524
BstACI	GRCGYC	2 cut(s)	84, 282
BstC8I	GCNNGC	2 cut(s)	247, 374
BstDEI	CTNAG	1 cut(s)	354
BstF5I	GGATG	1 cut(s)	403
BstFNI	CGCG	1 cut(s)	174
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	2 cut(s)	174, 266
BstKTI	GATC	5 cut(s)	105, 187, 295, 299, 403
BstMAI	GTCTC	3 cut(s)	157, 479, 536
BstMBI	GATC	5 cut(s)	102, 184, 292, 296, 400
BstMCI	CGRYCG	2 cut(s)	30, 382
BstMWI	GCNNNNNNNGC	2 cut(s)	213, 501
BstNI	CCWGG	2 cut(s)	309, 348
BstSCI	CCNGG	2 cut(s)	307, 346
BstUI	CGCG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	253
BstV2I	GAAGAC	1 cut(s)	61
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
Bsu15I	ATCGAT	1 cut(s)	295
BsuRI	GGCC	4 cut(s)	33, 137, 322, 372
BsuTUI	ATCGAT	1 cut(s)	295
BtgZI	GCGATG	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	403
Cac8I	GCNNGC	2 cut(s)	247, 374
CfoI	GCGC	2 cut(s)	174, 266
Cfr10I	RCCGGY	2 cut(s)	29, 245
Cfr13I	GGNCC	5 cut(s)	14, 32, 58, 136, 311
ClaI	ATCGAT	1 cut(s)	295
CseI	GACGC	4 cut(s)	92, 163, 290, 461
CsiI	ACCWGGT	1 cut(s)	346
CviAII	CATG	2 cut(s)	178, 368
DdeI	CTNAG	1 cut(s)	354
DpnI	GATC	5 cut(s)	104, 186, 294, 298, 402
DpnII	GATC	5 cut(s)	102, 184, 292, 296, 400
DraIII	CACNNNGTG	1 cut(s)	350
DriI	GACNNNNNGTC	1 cut(s)	471
Eam1105I	GACNNNNNGTC	1 cut(s)	471
Ecl136II	GAGCTC	2 cut(s)	118, 166
Eco130I	CCWWGG	1 cut(s)	252
Eco24I	GRGCYC	2 cut(s)	120, 168
Eco47I	GGWCC	3 cut(s)	14, 58, 311
Eco53kI	GAGCTC	2 cut(s)	118, 166
EcoICRI	GAGCTC	2 cut(s)	118, 166
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRII	CCWGG	2 cut(s)	307, 346
EcoT14I	CCWWGG	1 cut(s)	252
EcoT38I	GRGCYC	2 cut(s)	120, 168
ErhI	CCWWGG	1 cut(s)	252
Esp3I	CGTCTC	3 cut(s)	157, 479, 536
FaeI	CATG	2 cut(s)	181, 371
FaiI	YATR	2 cut(s)	179, 369
FaqI	GGGAC	1 cut(s)	478
FatI	CATG	2 cut(s)	177, 367
FauI	CCCGC	1 cut(s)	509
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	4 cut(s)	262, 267, 359, 515
FokI	GGATG	1 cut(s)	410
FriOI	GRGCYC	2 cut(s)	120, 168
Fsp4HI	GCNGC	4 cut(s)	262, 267, 359, 515
FspBI	CTAG	1 cut(s)	543
GlaI	GCGC	2 cut(s)	173, 265
GluI	GCNGC	4 cut(s)	262, 267, 359, 515
HaeII	RGCGCY	1 cut(s)	267
HaeIII	GGCC	4 cut(s)	33, 137, 322, 372
HapII	CCGG	4 cut(s)	30, 156, 246, 395
HgaI	GACGC	4 cut(s)	92, 163, 290, 461
HhaI	GCGC	2 cut(s)	174, 266
Hin1I	GRCGYC	2 cut(s)	84, 282
Hin1II	CATG	2 cut(s)	181, 371
Hin6I	GCGC	2 cut(s)	172, 264
HinP1I	GCGC	2 cut(s)	172, 264
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HindIII	AAGCTT	1 cut(s)	76
HpaII	CCGG	4 cut(s)	30, 156, 246, 395
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	1 cut(s)	289
Hpy188III	TCNNGA	4 cut(s)	61, 188, 452, 543
Hpy8I	GTNNAC	1 cut(s)	112
Hpy99I	CGWCG	8 cut(s)	47, 56, 86, 164, 224, 414, 423, 429
HpyAV	CCTTC	2 cut(s)	58, 244
HpyCH4III	ACNGT	2 cut(s)	380, 524
HpyCH4IV	ACGT	2 cut(s)	126, 150
HpyCH4V	TGCA	2 cut(s)	376, 391
HpyF10VI	GCNNNNNNNGC	2 cut(s)	213, 501
HpyF3I	CTNAG	1 cut(s)	354
HpySE526I	ACGT	2 cut(s)	126, 150
Hsp92I	GRCGYC	2 cut(s)	84, 282
Hsp92II	CATG	2 cut(s)	181, 371
HspAI	GCGC	2 cut(s)	172, 264
KroI	GCCGGC	1 cut(s)	245
KroNI	GCCGGC	1 cut(s)	247
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	5 cut(s)	102, 184, 292, 296, 400
LmnI	GCTCC	2 cut(s)	149, 254
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	1 cut(s)	404
MabI	ACCWGGT	1 cut(s)	346
MaeI	CTAG	1 cut(s)	543
MaeII	ACGT	2 cut(s)	126, 150
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	5 cut(s)	104, 186, 294, 298, 402
MboI	GATC	5 cut(s)	102, 184, 292, 296, 400
MboII	GAAGA	2 cut(s)	61, 467
MflI	RGATCY	1 cut(s)	102
MhlI	GDGCHC	3 cut(s)	120, 168, 355
MluCI	AATT	1 cut(s)	437
MmeI	TCCRAC	2 cut(s)	44, 171
MroNI	GCCGGC	1 cut(s)	245
MroXI	GAANNNNTTC	1 cut(s)	68
MspI	CCGG	4 cut(s)	30, 156, 246, 395
MspR9I	CCNGG	2 cut(s)	309, 348
MvaI	CCWGG	2 cut(s)	309, 348
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	2 cut(s)	213, 501
NaeI	GCCGGC	1 cut(s)	247
NdeII	GATC	5 cut(s)	102, 184, 292, 296, 400
NgoMIV	GCCGGC	1 cut(s)	245
NlaIII	CATG	2 cut(s)	181, 371
NlaIV	GGNNCC	3 cut(s)	34, 145, 250
NmeAIII	GCCGAG	3 cut(s)	99, 120, 295
NmuCI	GTSAC	1 cut(s)	46
PcsI	WCGNNNNNNNCGW	5 cut(s)	51, 90, 147, 156, 301
PdiI	GCCGGC	1 cut(s)	247
PdmI	GAANNNNTTC	1 cut(s)	68
PflFI	GACNNNGTC	1 cut(s)	56
PkrI	GCNGC	4 cut(s)	263, 268, 360, 516
Psp124BI	GAGCTC	2 cut(s)	120, 168
Psp6I	CCWGG	2 cut(s)	307, 346
PspGI	CCWGG	2 cut(s)	307, 346
PspN4I	GGNNCC	3 cut(s)	34, 145, 250
PspPI	GGNCC	5 cut(s)	14, 32, 58, 136, 311
PsuI	RGATCY	1 cut(s)	102
PsyI	GACNNNGTC	1 cut(s)	56
SacI	GAGCTC	2 cut(s)	120, 168
SatI	GCNGC	4 cut(s)	262, 267, 359, 515
Sau3AI	GATC	5 cut(s)	102, 184, 292, 296, 400
Sau96I	GGNCC	5 cut(s)	14, 32, 58, 136, 311
ScrFI	CCNGG	2 cut(s)	309, 348
SduI	GDGCHC	3 cut(s)	120, 168, 355
SexAI	ACCWGGT	1 cut(s)	346
SfaNI	GCATC	1 cut(s)	404
SinI	GGWCC	3 cut(s)	14, 58, 311
SmlI	CTYRAG	2 cut(s)	131, 167
SmoI	CTYRAG	2 cut(s)	131, 167
Sse9I	AATT	1 cut(s)	437
SsiI	CCGC	6 cut(s)	261, 314, 359, 493, 502, 515
SspMI	CTAG	1 cut(s)	543
SstI	GAGCTC	2 cut(s)	120, 168
StyD4I	CCNGG	2 cut(s)	307, 346
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	2 cut(s)	380, 524
TaiI	ACGT	2 cut(s)	129, 153
TaqI	TCGA	9 cut(s)	26, 81, 183, 189, 219, 295, 382, 412, 442
TasI	AATT	1 cut(s)	437
TauI	GCSGC	3 cut(s)	264, 361, 517
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	1 cut(s)	199
TspGWI	ACGGA	2 cut(s)	97, 398
Tth111I	GACNNNGTC	1 cut(s)	56
VpaK11BI	GGWCC	3 cut(s)	14, 58, 311
XapI	RAATTY	1 cut(s)	437
XbaI	TCTAGA	1 cut(s)	542
XmnI	GAANNNNTTC	1 cut(s)	68
XspI	CTAG	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.