MD03G1183300.v1.1

cleavage and polyadenylation specificity factor subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0006731
Physical Location & Seq
Forward (+)
25017701 .. 25021995
4295 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1183300.v1.1.491

Sequence Viewer

Length: 2142 bp
ATGGATGAAGGGGACGGGGCTGATCAGATGGGTCAGTTCCACCGCAACGAGGCGATCTCGGCGGTGGCCGACGATGGTTTTTTGGCCGAGGAGGACGACGATTATGAGGACCTTTACAACGACGTCAATGTCGGCGAGGGGTTTTATCAGTCTATGAGAAAGAACGAGGATGTAGGGTTTAGGAATGAGGTGGGGGAGGAGAAGAAAGTTGAGGTTGAGTCACCAGATGTTGCTCCGTCGGAATCTCAAGGTGGTCTGATACCCCGTAGTGGTGAGGAGACCTGTGGGGGTGGGGGTGGGGGTGATGGAGGGGTTAGAGGTTCTGCGTATAATAATCAGAATCTAGGGTTTAGAGGGAACGATATGGGTATGAAAGGGAGTGATGGGTTGGGTCCCGTTGGGGGTGGGGGAGGAGGTGCGATTAGGGTTGAATTAGGGCAGGCATCCAGTAAGAAGAAAGAGTTTGAGCAACAAAGTGGGAATAATAGTAGTGTTGGGGTGCAAGGGATTGTTGCTCAGCAGCCGCCGCAACAATTGCAACAACAACATCAACCACAATCTCATCCGCAACAGCAACAGTTACATGGCCCTGCTGCTGGTGGGAATGTGGGGAATGAGGGCATGTTGAGGCAAGCTGGTAGTGTTGGAGGTGGTAATATGAACGGGATTGGTGGGAATAGTGGTCCGGGAGGAGGATTTGGTGGTGCCACTGGTGGTGGAGCGGGGACAATATTGTTTGTGGGTGATTTGCATTGGTGGACTACTGATGCAGAGCTGGAGGCAGAGTTATGTAAGTATGGACCTGTTAAGGAAGTGAAGTTTTTCGATGAGAAAGCAAGTGGAAAGTCAAAAGGGTATTGTCAGGTTGAGTTTTATGATCCTAATTCTGCCACGGCCTGCAAGGAAGGAATGCATGGTCATGTGTTTAATGGGCGCCCATGCGTTGTAGCATTCGCATCACCATTTAGTGTTAAGAGAATGGGGGAGGCTCAAGTAAATAGGAACCAGCAGGTAACCCAAACTGCAGTGCCTCAAATTGGTGGGAAGAGGGGGTCCAATGAAGCCGGGAATAAAACTGGTGGGAGTAACATTTCAACTGGCGGGAATTATCAAGGTGGGGATAACAATAGAGGTTATGGGAGAGGTAACTGGGGGAGAGGTAATACACAGGGTATGGGAAATAGAGGACCAGTCGGACCAAGGAATAGGGGTGCGATGAATGGAAGGGGTATAATGGGTAATGGTGGAAATGGGTTTGGGCAAGGTATTGGTGCAACCCCTCCTATGATGCACCCTCAGTCAATGATGGGTCAGGGTTTTGATCCAGCTTTTGGTGGACCAATGGGGAGAATGGGAAGTTATGGAGGTTTTCCTGGTGCTCCTACGCCTCCTTTCTCAGGAATCTTGTCTTCATTTCCACCTGTGGGGAATGTTGGGCTACCTGGAGTGGCACCTCATGTGAATCCTGCATTTTTTGGAAGAGGAATGCCCATGAATGGAATGGGAATGATGCCTACATCAGGTGTTGATGGGCCTAATATGGGTATGTGGTCCGACCCTAGTATGGGTGGATGGGCAGGTGAAGAGCATGGTGGTGGCAGAGCTGGGGAGTCTAGTTATGGCGAGGAAGCTGCTTCTGACCATCAATATGGTGAGGTTAGTCATGATAGAGGAGGTGCTTGGCCAAATGCCATGAAGGAGAAAGATAGAGGTTCAGAGAGGGACTGGTCTGGATCTTCTGATAGAAGATATCGTGATGATAGGGATCAGGGATATGAGAGAGATGAGCCTAGAGAGAAAGAGGTGGCTCATGACCATGACTTCTCTGAAAGAAGGTATCGTGATGATGTTGATGTTAGTCGAGAACGGGATAGAGAGCGTGATAGGGGTCGGGAACGTTCTCGAGATCATGATCGTGAACGTGATAAAAATCGTGAACGAGACCGTGACAGACACAGGGAAGACAGAGACAGATATGCTGATCATCACAAGTACAGAGACCGTGAGCAGGAACATGATGATGAATGGGAACGGGGACGGTCATCCAGGCATAGTAAGGCACGGGTAACTCAAGAGGATGATCGTCGGTCAAGATCAAGGGATGCTGATTATGGGAAGAGAAGGCGGCTTACTTCTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000381 GO:0000785 GO:0000790 GO:0000791 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005694 GO:0005719 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006508 GO:0006509 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0031982 GO:0032774 GO:0032991 GO:0033119 GO:0033120 GO:0033619 GO:0034097 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043230 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044530 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048024 GO:0048025 GO:0048026 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050685 GO:0050686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051259 GO:0051260 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070062 GO:0070555 GO:0070887 GO:0071013 GO:0071310 GO:0071345 GO:0071347 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1902680 GO:1903311 GO:1903312 GO:1903313 GO:1903506 GO:1903508 GO:1903561 GO:1990837 GO:1990904 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
RRM_1

Protein Analysis

714

Amino Acids

76.82

Weight (kDa)

5.61

Isoelectric Point (pI)

38.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 245 - 314 5.8e-14 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1568
AasI GACNNNNNNGTC 1 cut(s) 128
AatII GACGTC 1 cut(s) 126
Acc36I ACCTGC 2 cut(s) 1000, 1568
AccB1I GGYRCC 3 cut(s) 704, 933, 1450
AccB7I CCANNNNNTGG 1 cut(s) 1331
AccBSI CCGCTC 1 cut(s) 722
AciI CCGC 8 cut(s) 43, 62, 524, 527, 566, 722, 1101, 2125
AclI AACGTT 1 cut(s) 1897
AclWI GGATC 4 cut(s) 872, 1316, 1741, 1773
AcoI YGGCCR 3 cut(s) 66, 84, 1682
AcyI GRCGYC 2 cut(s) 123, 934
AfaI GTAC 1 cut(s) 1994
AgsI TTSAA 2 cut(s) 431, 1095
AjnI CCWGG 3 cut(s) 1372, 1441, 2045
AluBI AGCT 5 cut(s) 635, 775, 1328, 1604, 1631
AluI AGCT 5 cut(s) 635, 775, 1328, 1604, 1631
Alw21I GWGCWC 1 cut(s) 1381
Alw26I GTCTC 4 cut(s) 272, 1935, 1962, 1992
AlwI GGATC 4 cut(s) 872, 1316, 1741, 1773
Ama87I CYCGRG 1 cut(s) 1902
AoxI GGCC 6 cut(s) 66, 84, 586, 894, 1532, 1682
ApeKI GCWGC 3 cut(s) 520, 593, 1631
Asp700I GAANNNNTTC 1 cut(s) 821
AspLEI GCGC 1 cut(s) 936
AsuC2I CCSGG 2 cut(s) 687, 1066
AsuHPI GGTGA 7 cut(s) 213, 284, 314, 755, 951, 1592, 1664
AvaI CYCGRG 1 cut(s) 1902
AvaII GGWCC 9 cut(s) 109, 392, 683, 800, 1053, 1187, 1196, 1337, 1551
BalI TGGCCA 1 cut(s) 1684
BanI GGYRCC 3 cut(s) 704, 933, 1450
BarI GAAGNNNNNNTAC 1 cut(s) 2113
BbsI GAAGAC 2 cut(s) 1401, 1968
Bbv12I GWGCWC 1 cut(s) 1381
BbvI GCAGC 3 cut(s) 532, 580, 1618
BccI CCATC 8 cut(s) 22, 68, 299, 377, 1300, 1523, 1566, 1650
BceAI ACGGC 1 cut(s) 909
BcgI CGANNNNNNTGC 2 cut(s) 1613, 1647
BciT130I CCWGG 3 cut(s) 1374, 1443, 2047
BclI TGATCA 2 cut(s) 22, 1981
BcnI CCSGG 2 cut(s) 687, 1066
BcoDI GTCTC 4 cut(s) 272, 1935, 1962, 1992
BfaI CTAG 4 cut(s) 344, 1560, 1614, 1791
BfmI CTRYAG 1 cut(s) 1023
BfoI RGCGCY 1 cut(s) 937
BfuAI ACCTGC 2 cut(s) 1000, 1568
BisI GCNGC 6 cut(s) 521, 524, 527, 594, 1632, 2126
BlpI GCTNAGC 1 cut(s) 516
BlsI GCNGC 6 cut(s) 522, 525, 528, 595, 1633, 2127
Bme1390I CCNGG 5 cut(s) 687, 1066, 1374, 1443, 2047
Bme18I GGWCC 9 cut(s) 109, 392, 683, 800, 1053, 1187, 1196, 1337, 1551
BmeT110I CYCGRG 1 cut(s) 1902
BmiI GGNNCC 7 cut(s) 393, 394, 706, 935, 1004, 1054, 1452
BmrFI CCNGG 5 cut(s) 687, 1066, 1374, 1443, 2047
BmrI ACTGGG 1 cut(s) 1159
BmsI GCATC 6 cut(s) 452, 757, 965, 1278, 1500, 2092
BmuI ACTGGG 1 cut(s) 1159
BpiI GAAGAC 2 cut(s) 1401, 1968
BplI GAGNNNNNCTC 2 cut(s) 41, 73
BpmI CTGGAG 2 cut(s) 797, 1464
Bpu1102I GCTNAGC 1 cut(s) 516
BpuEI CTTGAG 3 cut(s) 231, 975, 2055
BpuMI CCSGG 2 cut(s) 687, 1066
BsaBI GATNNNNATC 3 cut(s) 1764, 1911, 1929
BsaHI GRCGYC 2 cut(s) 123, 934
BsaI GGTCTC 3 cut(s) 272, 1935, 1992
BsaJI CCNNGG 3 cut(s) 87, 891, 1199
BsaXI ACNNNNNCTCC 2 cut(s) 770, 800
Bse1I ACTGG 7 cut(s) 447, 715, 1081, 1102, 1154, 1190, 1730
Bse8I GATNNNNATC 3 cut(s) 1764, 1911, 1929
BseBI CCWGG 3 cut(s) 1374, 1443, 2047
BseDI CCNNGG 3 cut(s) 87, 891, 1199
BseGI GGATG 8 cut(s) 10, 175, 443, 562, 1577, 2042, 2083, 2107
BseJI GATNNNNATC 3 cut(s) 1764, 1911, 1929
BseMII CTCAG 4 cut(s) 530, 1310, 1410, 2127
BseNI ACTGG 7 cut(s) 447, 715, 1081, 1102, 1154, 1190, 1730
BseRI GAGGAG 6 cut(s) 104, 212, 290, 426, 705, 1686
BseXI GCAGC 3 cut(s) 532, 580, 1618
BseYI CCCAGC 1 cut(s) 1604
BshFI GGCC 6 cut(s) 68, 86, 588, 896, 1534, 1684
BshNI GGYRCC 3 cut(s) 704, 933, 1450
BsiHKAI GWGCWC 1 cut(s) 1381
BsiHKCI CYCGRG 1 cut(s) 1902
BsiSI CCGG 2 cut(s) 686, 1065
BslFI GGGAC 5 cut(s) 26, 378, 739, 1736, 2049
BsmAI GTCTC 4 cut(s) 272, 1935, 1962, 1992
BsmFI GGGAC 5 cut(s) 26, 378, 739, 1736, 2049
BsmI GAATGC 3 cut(s) 915, 950, 1491
BsnI GGCC 6 cut(s) 68, 86, 588, 896, 1534, 1684
Bso31I GGTCTC 3 cut(s) 272, 1935, 1992
BsoBI CYCGRG 1 cut(s) 1902
Bsp1286I GDGCHC 1 cut(s) 1381
Bsp1720I GCTNAGC 1 cut(s) 516
BspACI CCGC 8 cut(s) 43, 62, 524, 527, 566, 722, 1101, 2125
BspANI GGCC 6 cut(s) 68, 86, 588, 896, 1534, 1684
BspCNI CTCAG 4 cut(s) 529, 1309, 1409, 2128
BspHI TCATGA 3 cut(s) 1663, 1810, 1909
BspLI GGNNCC 7 cut(s) 393, 394, 706, 935, 1004, 1054, 1452
BspMAI CTGCAG 1 cut(s) 1027
BspMI ACCTGC 2 cut(s) 1000, 1568
BspPI GGATC 4 cut(s) 872, 1316, 1741, 1773
BspQI GCTCTTC 1 cut(s) 1578
BspT107I GGYRCC 3 cut(s) 704, 933, 1450
BspTNI GGTCTC 3 cut(s) 272, 1935, 1992
BsrBI CCGCTC 1 cut(s) 722
BsrI ACTGG 7 cut(s) 447, 715, 1081, 1102, 1154, 1190, 1730
BssECI CCNNGG 3 cut(s) 87, 891, 1199
BssNI GRCGYC 2 cut(s) 123, 934
BssT1I CCWWGG 1 cut(s) 1199
Bst2UI CCWGG 3 cut(s) 1374, 1443, 2047
Bst4CI ACNGT 4 cut(s) 579, 1946, 2003, 2040
Bst6I CTCTTC 4 cut(s) 1040, 1474, 1578, 2111
BstACI GRCGYC 2 cut(s) 123, 934
BstAPI GCANNNNNTGC 1 cut(s) 535
BstC8I GCNNGC 3 cut(s) 441, 633, 898
BstDEI CTNAG 4 cut(s) 516, 1296, 1396, 2136
BstDSI CCRYGG 1 cut(s) 891
BstEII GGTNACC 1 cut(s) 1012
BstENI CCTNNNNNAGG 2 cut(s) 1395, 1518
BstF5I GGATG 8 cut(s) 10, 175, 443, 562, 1577, 2042, 2083, 2107
BstH2I RGCGCY 1 cut(s) 937
BstHHI GCGC 1 cut(s) 936
BstMAI GTCTC 4 cut(s) 272, 1935, 1962, 1992
BstMWI GCNNNNNNNGC 3 cut(s) 59, 526, 535
BstNI CCWGG 3 cut(s) 1374, 1443, 2047
BstNSI RCATGY 1 cut(s) 625
BstPI GGTNACC 1 cut(s) 1012
BstSCI CCNGG 5 cut(s) 685, 1064, 1372, 1441, 2045
BstSFI CTRYAG 1 cut(s) 1023
BstV1I GCAGC 3 cut(s) 532, 580, 1618
BstV2I GAAGAC 2 cut(s) 1401, 1968
BstX2I RGATCY 1 cut(s) 1733
BstXI CCANNNNNNTGG 1 cut(s) 1649
BstYI RGATCY 1 cut(s) 1733
BsuRI GGCC 6 cut(s) 68, 86, 588, 896, 1534, 1684
BtgI CCRYGG 1 cut(s) 891
BtgZI GCGATG 1 cut(s) 1229
BtsCI GGATG 8 cut(s) 10, 175, 443, 562, 1577, 2042, 2083, 2107
BtsI GCAGTG 1 cut(s) 1032
BtsIMutI CAGTG 2 cut(s) 708, 1032
BveI ACCTGC 2 cut(s) 1000, 1568
Cac8I GCNNGC 3 cut(s) 441, 633, 898
CciI TCATGA 3 cut(s) 1663, 1810, 1909
CfoI GCGC 1 cut(s) 936
Csp6I GTAC 1 cut(s) 1993
CviQI GTAC 1 cut(s) 1993
DdeI CTNAG 4 cut(s) 516, 1296, 1396, 2136
DinI GGCGCC 1 cut(s) 935
DrdI GACNNNNNNGTC 1 cut(s) 128
DseDI GACNNNNNNGTC 1 cut(s) 128
EaeI YGGCCR 3 cut(s) 66, 84, 1682
Eam1104I CTCTTC 4 cut(s) 1040, 1474, 1578, 2111
EarI CTCTTC 4 cut(s) 1040, 1474, 1578, 2111
Eco130I CCWWGG 1 cut(s) 1199
Eco31I GGTCTC 3 cut(s) 272, 1935, 1992
Eco32I GATATC 1 cut(s) 1751
Eco47I GGWCC 9 cut(s) 109, 392, 683, 800, 1053, 1187, 1196, 1337, 1551
Eco88I CYCGRG 1 cut(s) 1902
Eco91I GGTNACC 1 cut(s) 1012
EcoNI CCTNNNNNAGG 2 cut(s) 1395, 1518
EcoO109I RGGNCCY 2 cut(s) 109, 392
EcoO65I GGTNACC 1 cut(s) 1012
EcoRII CCWGG 3 cut(s) 1372, 1441, 2045
EcoRV GATATC 1 cut(s) 1751
EcoT14I CCWWGG 1 cut(s) 1199
EcoT22I ATGCAT 1 cut(s) 915
EgeI GGCGCC 1 cut(s) 935
EheI GGCGCC 1 cut(s) 935
ErhI CCWWGG 1 cut(s) 1199
FaqI GGGAC 5 cut(s) 26, 378, 739, 1736, 2049
FauI CCCGC 2 cut(s) 715, 1094
FbaI TGATCA 2 cut(s) 22, 1981
Fnu4HI GCNGC 6 cut(s) 521, 524, 527, 594, 1632, 2126
FokI GGATG 8 cut(s) 17, 182, 430, 549, 1584, 2029, 2090, 2114
Fsp4HI GCNGC 6 cut(s) 521, 524, 527, 594, 1632, 2126
FspBI CTAG 4 cut(s) 344, 1560, 1614, 1791
GlaI GCGC 1 cut(s) 935
GluI GCNGC 6 cut(s) 521, 524, 527, 594, 1632, 2126
GsaI CCCAGC 1 cut(s) 1608
GsuI CTGGAG 2 cut(s) 797, 1464
HaeII RGCGCY 1 cut(s) 937
HaeIII GGCC 6 cut(s) 68, 86, 588, 896, 1534, 1684
HapII CCGG 2 cut(s) 686, 1065
HhaI GCGC 1 cut(s) 936
Hin1I GRCGYC 2 cut(s) 123, 934
Hin6I GCGC 1 cut(s) 934
HinP1I GCGC 1 cut(s) 934
HinfI GANTC 6 cut(s) 218, 242, 340, 1401, 1462, 1610
HpaII CCGG 2 cut(s) 686, 1065
HphI GGTGA 7 cut(s) 213, 284, 314, 755, 951, 1592, 1664
Hpy166II GTNNAC 4 cut(s) 759, 1337, 1919, 1937
Hpy8I GTNNAC 4 cut(s) 759, 1337, 1919, 1937
Hpy99I CGWCG 5 cut(s) 74, 101, 125, 241, 2088
HpyAV CCTTC 5 cut(s) 899, 1218, 1690, 1827, 2115
HpyCH4III ACNGT 4 cut(s) 579, 1946, 2003, 2040
HpyCH4IV ACGT 3 cut(s) 123, 1897, 1921
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 526, 535
HpyF3I CTNAG 4 cut(s) 516, 1296, 1396, 2136
HpySE526I ACGT 3 cut(s) 123, 1897, 1921
Hsp92I GRCGYC 2 cut(s) 123, 934
HspAI GCGC 1 cut(s) 934
KasI GGCGCC 1 cut(s) 933
KflI GGGWCCC 1 cut(s) 392
Ksp22I TGATCA 2 cut(s) 22, 1981
LguI GCTCTTC 1 cut(s) 1578
LmnI GCTCC 3 cut(s) 238, 719, 1384
Lsp1109I GCAGC 3 cut(s) 532, 580, 1618
LweI GCATC 6 cut(s) 452, 757, 965, 1278, 1500, 2092
MaeI CTAG 4 cut(s) 344, 1560, 1614, 1791
MaeII ACGT 3 cut(s) 123, 1897, 1921
MaeIII GTNAC 7 cut(s) 219, 579, 1012, 1085, 1145, 1946, 2065
MbiI CCGCTC 1 cut(s) 722
MfeI CAATTG 1 cut(s) 533
MflI RGATCY 1 cut(s) 1733
MhlI GDGCHC 1 cut(s) 1381
MlsI TGGCCA 1 cut(s) 1684
MluCI AATT 5 cut(s) 431, 533, 883, 1035, 1105
MluNI TGGCCA 1 cut(s) 1684
Mly113I GGCGCC 1 cut(s) 934
MlyI GAGTC 2 cut(s) 227, 1619
MmeI TCCRAC 4 cut(s) 219, 625, 1174, 1578
Mox20I TGGCCA 1 cut(s) 1684
Mph1103I ATGCAT 1 cut(s) 915
MroXI GAANNNNTTC 1 cut(s) 821
MscI TGGCCA 1 cut(s) 1684
MseI TTAA 3 cut(s) 807, 927, 972
MslI CAYNNNNRTG 6 cut(s) 918, 1593, 1647, 1815, 1914, 2019
Msp20I TGGCCA 1 cut(s) 1684
MspI CCGG 2 cut(s) 686, 1065
MspR9I CCNGG 5 cut(s) 687, 1066, 1374, 1443, 2047
MunI CAATTG 1 cut(s) 533
Mva1269I GAATGC 3 cut(s) 915, 950, 1491
MvaI CCWGG 3 cut(s) 1374, 1443, 2047
MwoI GCNNNNNNNGC 3 cut(s) 59, 526, 535
NarI GGCGCC 1 cut(s) 934
NciI CCSGG 2 cut(s) 687, 1066
NlaIV GGNNCC 7 cut(s) 393, 394, 706, 935, 1004, 1054, 1452
NmeAIII GCCGAG 2 cut(s) 38, 112
NmuCI GTSAC 2 cut(s) 219, 1946
NsiI ATGCAT 1 cut(s) 915
NspI RCATGY 1 cut(s) 625
PaeR7I CTCGAG 1 cut(s) 1902
PagI TCATGA 3 cut(s) 1663, 1810, 1909
PaqCI CACCTGC 1 cut(s) 1568
PciSI GCTCTTC 1 cut(s) 1578
PctI GAATGC 3 cut(s) 915, 950, 1491
PdmI GAANNNNTTC 1 cut(s) 821
PfeI GAWTC 4 cut(s) 242, 340, 1401, 1462
PflMI CCANNNNNTGG 1 cut(s) 1331
PfoI TCCNGGA 1 cut(s) 685
PkrI GCNGC 6 cut(s) 522, 525, 528, 595, 1633, 2127
PleI GAGTC 2 cut(s) 226, 1618
PluTI GGCGCC 1 cut(s) 937
PpsI GAGTC 2 cut(s) 226, 1618
PpuMI RGGWCCY 2 cut(s) 109, 392
Psp1406I AACGTT 1 cut(s) 1897
Psp5II RGGWCCY 2 cut(s) 109, 392
Psp6I CCWGG 3 cut(s) 1372, 1441, 2045
PspEI GGTNACC 1 cut(s) 1012
PspFI CCCAGC 1 cut(s) 1604
PspGI CCWGG 3 cut(s) 1372, 1441, 2045
PspN4I GGNNCC 7 cut(s) 393, 394, 706, 935, 1004, 1054, 1452
PspPPI RGGWCCY 2 cut(s) 109, 392
PstI CTGCAG 1 cut(s) 1027
PsuI RGATCY 1 cut(s) 1733
RsaI GTAC 1 cut(s) 1994
RsaNI GTAC 1 cut(s) 1993
RseI CAYNNNNRTG 6 cut(s) 918, 1593, 1647, 1815, 1914, 2019
SapI GCTCTTC 1 cut(s) 1578
SaqAI TTAA 3 cut(s) 807, 927, 972
SatI GCNGC 6 cut(s) 521, 524, 527, 594, 1632, 2126
SchI GAGTC 2 cut(s) 227, 1619
ScrFI CCNGG 5 cut(s) 687, 1066, 1374, 1443, 2047
SduI GDGCHC 1 cut(s) 1381
SfaNI GCATC 6 cut(s) 452, 757, 965, 1278, 1500, 2092
SfcI CTRYAG 1 cut(s) 1023
SfoI GGCGCC 1 cut(s) 935
Sfr274I CTCGAG 1 cut(s) 1902
SinI GGWCC 9 cut(s) 109, 392, 683, 800, 1053, 1187, 1196, 1337, 1551
SlaI CTCGAG 1 cut(s) 1902
SmiMI CAYNNNNRTG 6 cut(s) 918, 1593, 1647, 1815, 1914, 2019
SmlI CTYRAG 4 cut(s) 246, 990, 1902, 2070
SmoI CTYRAG 4 cut(s) 246, 990, 1902, 2070
Sse9I AATT 5 cut(s) 431, 533, 883, 1035, 1105
SsiI CCGC 8 cut(s) 43, 62, 524, 527, 566, 722, 1101, 2125
SspDI GGCGCC 1 cut(s) 933
SspI AATATT 1 cut(s) 732
SspMI CTAG 4 cut(s) 344, 1560, 1614, 1791
StyD4I CCNGG 5 cut(s) 685, 1064, 1372, 1441, 2045
StyI CCWWGG 1 cut(s) 1199
TaaI ACNGT 4 cut(s) 579, 1946, 2003, 2040
TaiI ACGT 3 cut(s) 126, 1900, 1924
TaqI TCGA 3 cut(s) 825, 1861, 1903
TaqII GACCGA 1 cut(s) 2076
TasI AATT 5 cut(s) 431, 533, 883, 1035, 1105
TatI WGTACW 1 cut(s) 1992
TauI GCSGC 3 cut(s) 526, 529, 2128
TfiI GAWTC 4 cut(s) 242, 340, 1401, 1462
Tru1I TTAA 3 cut(s) 807, 927, 972
Tru9I TTAA 3 cut(s) 807, 927, 972
TscAI CASTG 2 cut(s) 715, 1032
TseFI GTSAC 2 cut(s) 219, 1946
TseI GCWGC 3 cut(s) 520, 593, 1631
Tsp45I GTSAC 2 cut(s) 219, 1946
TspDTI ATGAA 9 cut(s) 21, 386, 674, 1074, 1232, 1401, 1508, 1709, 2037
TspGWI ACGGA 1 cut(s) 225
TspRI CASTG 2 cut(s) 715, 1032
Van91I CCANNNNNTGG 1 cut(s) 1331
VpaK11BI GGWCC 9 cut(s) 109, 392, 683, 800, 1053, 1187, 1196, 1337, 1551
XagI CCTNNNNNAGG 2 cut(s) 1395, 1518
XceI RCATGY 1 cut(s) 625
XcmI CCANNNNNNNNNTGG 1 cut(s) 1498
XhoI CTCGAG 1 cut(s) 1902
XmnI GAANNNNTTC 1 cut(s) 821
XspI CTAG 4 cut(s) 344, 1560, 1614, 1791
ZraI GACGTC 1 cut(s) 124
Zsp2I ATGCAT 1 cut(s) 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.