Rh5BG364300

cleavage and polyadenylation specificity factor subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0006731
Physical Location & Seq
Forward (+)
57129502 .. 57134810
5309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG364300.1

Sequence Viewer

Length: 2118 bp
ATGGACGACGGCGACGGAGCCGATCATTTCCACCGTAACGAGGCCATCTCGGCCGTCGCCGACGACGGCTTTTTAGCCGAGGAGGACGACGACTACGAGGACCTCTACAACGATGTGAATGTCGGCGAGGGGTTTTATCAGTCTATGAGAAAGAGCGAGGAATCAGGGTTTAAAAATGAGGCCGTGGAGGAGAAGAAGGTTGAGTTGCCGGAGGTTTTGGCTCCGCAACATCAAGGCGCTCCGATACCGAGTTCCGGAGGCGGTGAGGGTAGGGGTTCTGGGTTTGGTAATCAGAATCTAGGGTTTAGAGGGAACGAGATGGGTGCGAAAGGGAGTGGTGGGTTGGGAGGGCCTATTGGCAGTGGAGGTGGGATGAGGATTGAATTAGGGCAAGCGTCGAGTAAATTGAATGAGTTTGAGCACCAAAGTGGGAATAATGTTGGTCTTGGGGTTCAAGGGATTGGTGCTCAGCAGCAGCAGCAGCAGCATCAGCATCAGCATCAATTACAACCGCAACATCAACTGCAACCACAATCGCAACTGCAACCTCCACAGCAACATCAACAGTTACACGGTGGTGCTGTTGCCGTTGGGAATGTGGGGAATGAGGGTTTCTTGAGGCAACAACCTGGTGGTGTCGGAGTGGGGAATGTGAACGGTGTTGGTGGGAACAGTGGTCCAGGAGGAGGATTCAGTGGAGGTGGTGCAGGTGGGGCAACACTGTATGTGGGGGATTTGCACTGGTGGACAACGGATGCAGAGCTGGAGGCGGAGTTGTGCAAGTATGGAGCTGTGAAGGAAGTGAAGTTTTTCGATGAGAAAGCCAGTGGGAAGTCTAAAGGATATTGCCAGGTAGACTTCTATGATTCTGCTGCTGCCATGGCCTGCAAGGATGGGATGCATGGGCATTTGTTTAATGGGCGGCCATGTGTTGTTGCTTTTGCATCACCCTATAGTGTTAAGAGAATGGGGGAGGCTCAAGTGAATAGGAACCAGCAGGTAACCCAAACTGCACAAGCTCAACCAAGGAGGGGGCCTAATGATGCTGCTGGGAATAAAGTTGGTGGGAGTGCCATAACAACAGGTGGGAATTATCAAGGTGGGGATAATAACAGCAGAGGTTATGGGAGAGCTAACTGGGGCCGAGGTAATTCTCAGGGTATGGGAGGTAGAGGTCCAGGTGGTCCGATGAGGAATAGGGGTGGAATGAGTGGCAGAGGTATAATGGGGAATGGTGGAAACGGGTTTGGGCAAGGTATGGGGGCAACCCCTCCTTTGATGCACCCTCAGTCAATGATGGGTCAGGGCTTTGATCCAGCTTTTGGGGCTCCAATGGGAAGAATGGGGAGTTATGGAGGCTTTCCAGGAGCTCCACAGCCTCCTTTCTCTGGGATGATGTCTTCATTCCCACCGGTTGGGGGTGTTGGGCTGCCTGGAGTAGCTCCTCATGTGAATCCTGCATTTTTTGGACGAGGGATGCCCATGGGAATGATGCCGACATCAGGTATTGACGGGCCTAATATGGGAATGTGGCCGGATCCTAATATGGGGGGTGGATGGCCTGGTGAGGATCATGGTGGTGGCAGAGCTGGGGAGTCTAGTTATGGTGAGGAAGCTGGTTCTGACCATCAATATGGTGAGGGTAGTCATGATAGAGGTGGGTGGCAGAATGCTATGAAGGAGAAAGATAGAGGTTCAGAGAGGGACTGGTCTGGATCTTCTGATAGGAGGTATCGGGAAGATAGGGATCAAGGGTTTGACAGAGACATGCCAAGAGAGAAAGAAGTGGGTCATGACCGTGAATGGTCTGAAAGAAGGCATCGGAATGATGTCGATGTTAATCGAGAGCGGGACAGAGAGCGTGATAGGGGCCGAGAACGTTCTCGAGATCGCGATCGTGACAGGTACAGGGAAGATAAAGAAAGATATGCTGATCATCATAAATACAGAGATCGTGAAACGGTGCACCAGGATGAAATAGAAAGGGGGAGGTCTACAAGGACCCATAGTAAGGCACGCTTATCTGAAGATGATGACCGTCGTTCAAGATCTAGGGACCGCCGTTCAAGATCTAGGGATGTTGATTATGGGAAGAGGCGGCGGCTTACTTCTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000381 GO:0000785 GO:0000790 GO:0000791 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005694 GO:0005719 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006508 GO:0006509 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0031982 GO:0032774 GO:0032991 GO:0033119 GO:0033120 GO:0033619 GO:0034097 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043230 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044530 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048024 GO:0048025 GO:0048026 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050685 GO:0050686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051259 GO:0051260 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070062 GO:0070555 GO:0070887 GO:0071013 GO:0071310 GO:0071345 GO:0071347 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1902680 GO:1903311 GO:1903312 GO:1903313 GO:1903506 GO:1903508 GO:1903561 GO:1990837 GO:1990904 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
RRM_1

Protein Analysis

705

Amino Acids

76.14

Weight (kDa)

6.2

Isoelectric Point (pI)

44.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 241 - 310 2.8e-11 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 698
Acc36I ACCTGC 2 cut(s) 698, 988
AccB7I CCANNNNNTGG 2 cut(s) 1322, 1415
AccBSI CCGCTC 1 cut(s) 1849
AccI GTMKAC 2 cut(s) 855, 1994
AccII CGCG 1 cut(s) 1893
AccIII TCCGGA 1 cut(s) 254
AciI CCGC 9 cut(s) 224, 261, 512, 770, 922, 1849, 2059, 2098, 2101
AclI AACGTT 1 cut(s) 1879
AclWI GGATC 6 cut(s) 1307, 1532, 1545, 1578, 1723, 1755
AcoI YGGCCR 3 cut(s) 51, 923, 1532
AcuI CTGAAG 1 cut(s) 2046
AfaI GTAC 1 cut(s) 1907
AgeI ACCGGT 1 cut(s) 1411
AgsI TTSAA 5 cut(s) 383, 409, 455, 2046, 2067
AjnI CCWGG 8 cut(s) 628, 679, 849, 1177, 1363, 1432, 1561, 1968
AleI CACNNNNGTG 2 cut(s) 426, 576
AluBI AGCT 9 cut(s) 763, 791, 1019, 1133, 1319, 1370, 1442, 1589, 1616
AluI AGCT 9 cut(s) 763, 791, 1019, 1133, 1319, 1370, 1442, 1589, 1616
Alw21I GWGCWC 4 cut(s) 423, 469, 1372, 1968
Alw26I GTCTC 1 cut(s) 1758
Alw44I GTGCAC 1 cut(s) 1964
AlwI GGATC 6 cut(s) 1307, 1532, 1545, 1578, 1723, 1755
Ama87I CYCGRG 1 cut(s) 1884
Aor13HI TCCGGA 1 cut(s) 254
ApaLI GTGCAC 1 cut(s) 1964
ApeKI GCWGC 9 cut(s) 472, 475, 478, 481, 484, 872, 875, 1046, 1429
AsiGI ACCGGT 1 cut(s) 1411
Asp700I GAANNNNTTC 1 cut(s) 809
AspLEI GCGC 1 cut(s) 239
AsuHPI GGTGA 5 cut(s) 275, 939, 1577, 1619, 1649
AvaI CYCGRG 1 cut(s) 1884
AvaII GGWCC 6 cut(s) 100, 677, 1175, 1184, 2001, 2056
BaeGI GKGCMC 1 cut(s) 1968
BamHI GGATCC 1 cut(s) 1537
BanII GRGCYC 2 cut(s) 1330, 1372
BbsI GAAGAC 1 cut(s) 1392
Bbv12I GWGCWC 4 cut(s) 423, 469, 1372, 1968
BbvI GCAGC 9 cut(s) 484, 487, 490, 493, 496, 859, 862, 1033, 1416
BccI CCATC 6 cut(s) 53, 313, 887, 1291, 1551, 1635
BceAI ACGGC 6 cut(s) 25, 38, 82, 167, 572, 2046
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BciT130I CCWGG 8 cut(s) 630, 681, 851, 1179, 1365, 1434, 1563, 1970
BclI TGATCA 1 cut(s) 1933
BcoDI GTCTC 1 cut(s) 1758
BfaI CTAG 4 cut(s) 299, 1599, 2052, 2073
BfmI CTRYAG 1 cut(s) 952
BfoI RGCGCY 1 cut(s) 240
BfuAI ACCTGC 2 cut(s) 698, 988
BglI GCCNNNNNGGC 1 cut(s) 50
BglII AGATCT 2 cut(s) 2048, 2069
BlpI GCTNAGC 1 cut(s) 468
Bme1390I CCNGG 8 cut(s) 630, 681, 851, 1179, 1365, 1434, 1563, 1970
Bme18I GGWCC 6 cut(s) 100, 677, 1175, 1184, 2001, 2056
BmeT110I CYCGRG 1 cut(s) 1884
BmrFI CCNGG 8 cut(s) 630, 681, 851, 1179, 1365, 1434, 1563, 1970
BmrI ACTGGG 1 cut(s) 1147
BmuI ACTGGG 1 cut(s) 1147
BpiI GAAGAC 1 cut(s) 1392
BplI GAGNNNNNCTC 2 cut(s) 32, 64
BpmI CTGGAG 2 cut(s) 785, 1455
Bpu1102I GCTNAGC 1 cut(s) 468
BpuEI CTTGAG 2 cut(s) 637, 963
BsaBI GATNNNNATC 3 cut(s) 1746, 1839, 1893
BsaJI CCNNGG 6 cut(s) 78, 183, 879, 1025, 1144, 1482
BsaWI WCCGGW 2 cut(s) 254, 1411
BsaXI ACNNNNNCTCC 2 cut(s) 758, 788
Bse118I RCCGGY 1 cut(s) 1411
Bse1I ACTGG 4 cut(s) 746, 825, 1142, 1712
Bse8I GATNNNNATC 3 cut(s) 1746, 1839, 1893
BseAI TCCGGA 1 cut(s) 254
BseBI CCWGG 8 cut(s) 630, 681, 851, 1179, 1365, 1434, 1563, 1970
BseDI CCNNGG 6 cut(s) 78, 183, 879, 1025, 1144, 1482
BseGI GGATG 9 cut(s) 378, 760, 898, 903, 1398, 1482, 1562, 1978, 2083
BseJI GATNNNNATC 3 cut(s) 1746, 1839, 1893
BseMII CTCAG 4 cut(s) 482, 1169, 1301, 2103
BseNI ACTGG 4 cut(s) 746, 825, 1142, 1712
BseRI GAGGAG 4 cut(s) 95, 203, 699, 1434
BseSI GKGCMC 1 cut(s) 1968
BseX3I CGGCCG 1 cut(s) 51
BseXI GCAGC 9 cut(s) 484, 487, 490, 493, 496, 859, 862, 1033, 1416
BseYI CCCAGC 2 cut(s) 1049, 1589
BsgI GTGCAG 2 cut(s) 726, 996
Bsh1236I CGCG 1 cut(s) 1893
Bsh1285I CGRYCG 2 cut(s) 54, 1897
BshTI ACCGGT 1 cut(s) 1411
BsiEI CGRYCG 2 cut(s) 54, 1897
BsiHKAI GWGCWC 4 cut(s) 423, 469, 1372, 1968
BsiHKCI CYCGRG 1 cut(s) 1884
BsiSI CCGG 4 cut(s) 209, 255, 1412, 1535
BslFI GGGAC 3 cut(s) 1718, 1865, 2069
BsmAI GTCTC 1 cut(s) 1758
BsmFI GGGAC 3 cut(s) 1718, 1865, 2069
BsmI GAATGC 1 cut(s) 1675
BsoBI CYCGRG 1 cut(s) 1884
Bsp1286I GDGCHC 5 cut(s) 423, 469, 1330, 1372, 1968
Bsp13I TCCGGA 1 cut(s) 254
Bsp1720I GCTNAGC 1 cut(s) 468
Bsp19I CCATGG 2 cut(s) 879, 1482
Bsp68I TCGCGA 1 cut(s) 1893
BspACI CCGC 9 cut(s) 224, 261, 512, 770, 922, 1849, 2059, 2098, 2101
BspCNI CTCAG 4 cut(s) 481, 1168, 1300, 2104
BspEI TCCGGA 1 cut(s) 254
BspFNI CGCG 1 cut(s) 1893
BspHI TCATGA 2 cut(s) 1648, 1792
BspMI ACCTGC 2 cut(s) 698, 988
BspPI GGATC 6 cut(s) 1307, 1532, 1545, 1578, 1723, 1755
BsrBI CCGCTC 1 cut(s) 1849
BsrFI RCCGGY 1 cut(s) 1411
BsrI ACTGG 4 cut(s) 746, 825, 1142, 1712
BssAI RCCGGY 1 cut(s) 1411
BssECI CCNNGG 6 cut(s) 78, 183, 879, 1025, 1144, 1482
BssT1I CCWWGG 3 cut(s) 879, 1025, 1482
Bst2UI CCWGG 8 cut(s) 630, 681, 851, 1179, 1365, 1434, 1563, 1970
Bst4CI ACNGT 9 cut(s) 35, 567, 575, 659, 674, 723, 1799, 1963, 2039
Bst6I CTCTTC 1 cut(s) 2087
BstC8I GCNNGC 3 cut(s) 393, 886, 2017
BstDEI CTNAG 4 cut(s) 468, 1155, 1287, 2112
BstDSI CCRYGG 3 cut(s) 183, 879, 1482
BstEII GGTNACC 1 cut(s) 1000
BstF5I GGATG 9 cut(s) 378, 760, 898, 903, 1398, 1482, 1562, 1978, 2083
BstFNI CGCG 1 cut(s) 1893
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 1 cut(s) 239
BstMAI GTCTC 1 cut(s) 1758
BstMCI CGRYCG 2 cut(s) 54, 1897
BstMWI GCNNNNNNNGC 8 cut(s) 50, 478, 481, 484, 490, 713, 881, 1325
BstNI CCWGG 8 cut(s) 630, 681, 851, 1179, 1365, 1434, 1563, 1970
BstNSI RCATGY 1 cut(s) 1771
BstPI GGTNACC 1 cut(s) 1000
BstSCI CCNGG 8 cut(s) 628, 679, 849, 1177, 1363, 1432, 1561, 1968
BstSFI CTRYAG 1 cut(s) 952
BstSLI GKGCMC 1 cut(s) 1968
BstUI CGCG 1 cut(s) 1893
BstV1I GCAGC 9 cut(s) 484, 487, 490, 493, 496, 859, 862, 1033, 1416
BstV2I GAAGAC 1 cut(s) 1392
BstX2I RGATCY 4 cut(s) 1537, 1715, 2048, 2069
BstXI CCANNNNNNTGG 1 cut(s) 1634
BstYI RGATCY 4 cut(s) 1537, 1715, 2048, 2069
BstZI CGGCCG 1 cut(s) 51
BtgI CCRYGG 3 cut(s) 183, 879, 1482
BtsCI GGATG 9 cut(s) 378, 760, 898, 903, 1398, 1482, 1562, 1978, 2083
BtsI GCAGTG 1 cut(s) 367
BtsIMutI CAGTG 6 cut(s) 367, 679, 700, 719, 739, 832
BtuMI TCGCGA 1 cut(s) 1893
BveI ACCTGC 2 cut(s) 698, 988
Cac8I GCNNGC 3 cut(s) 393, 886, 2017
CciI TCATGA 2 cut(s) 1648, 1792
CfoI GCGC 1 cut(s) 239
Cfr10I RCCGGY 1 cut(s) 1411
CseI GACGC 1 cut(s) 384
CsiI ACCWGGT 1 cut(s) 628
Csp6I GTAC 1 cut(s) 1906
CspAI ACCGGT 1 cut(s) 1411
CviAII CATG 9 cut(s) 880, 902, 927, 1448, 1483, 1574, 1649, 1768, 1793
CviQI GTAC 1 cut(s) 1906
DdeI CTNAG 4 cut(s) 468, 1155, 1287, 2112
DraI TTTAAA 1 cut(s) 172
EaeI YGGCCR 3 cut(s) 51, 923, 1532
EagI CGGCCG 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 2087
EarI CTCTTC 1 cut(s) 2087
EciI GGCGGA 1 cut(s) 785
Ecl136II GAGCTC 1 cut(s) 1370
EclXI CGGCCG 1 cut(s) 51
Eco130I CCWWGG 3 cut(s) 879, 1025, 1482
Eco24I GRGCYC 2 cut(s) 1330, 1372
Eco47I GGWCC 6 cut(s) 100, 677, 1175, 1184, 2001, 2056
Eco52I CGGCCG 1 cut(s) 51
Eco53kI GAGCTC 1 cut(s) 1370
Eco57I CTGAAG 1 cut(s) 2046
Eco88I CYCGRG 1 cut(s) 1884
Eco91I GGTNACC 1 cut(s) 1000
EcoICRI GAGCTC 1 cut(s) 1370
EcoO109I RGGNCCY 4 cut(s) 100, 350, 1034, 2001
EcoO65I GGTNACC 1 cut(s) 1000
EcoRII CCWGG 8 cut(s) 628, 679, 849, 1177, 1363, 1432, 1561, 1968
EcoT14I CCWWGG 3 cut(s) 879, 1025, 1482
EcoT22I ATGCAT 1 cut(s) 903
EcoT38I GRGCYC 2 cut(s) 1330, 1372
ErhI CCWWGG 3 cut(s) 879, 1025, 1482
FaeI CATG 9 cut(s) 883, 905, 930, 1451, 1486, 1577, 1652, 1771, 1796
FalI AAGNNNNNCTT 2 cut(s) 2003, 2035
FaqI GGGAC 3 cut(s) 1718, 1865, 2069
FatI CATG 9 cut(s) 879, 901, 926, 1447, 1482, 1573, 1648, 1767, 1792
FauI CCCGC 1 cut(s) 1842
FbaI TGATCA 1 cut(s) 1933
FblI GTMKAC 2 cut(s) 855, 1994
FokI GGATG 9 cut(s) 385, 767, 905, 910, 1405, 1489, 1569, 1985, 2090
FriOI GRGCYC 2 cut(s) 1330, 1372
FspBI CTAG 4 cut(s) 299, 1599, 2052, 2073
GlaI GCGC 1 cut(s) 238
GsaI CCCAGC 2 cut(s) 1053, 1593
GsuI CTGGAG 2 cut(s) 785, 1455
HaeII RGCGCY 1 cut(s) 240
HapII CCGG 4 cut(s) 209, 255, 1412, 1535
HgaI GACGC 1 cut(s) 384
HhaI GCGC 1 cut(s) 239
Hin1II CATG 9 cut(s) 883, 905, 930, 1451, 1486, 1577, 1652, 1771, 1796
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HinfI GANTC 6 cut(s) 161, 295, 690, 866, 1453, 1595
HpaII CCGG 4 cut(s) 209, 255, 1412, 1535
HphI GGTGA 5 cut(s) 275, 939, 1577, 1619, 1649
Hpy166II GTNNAC 5 cut(s) 655, 747, 856, 1966, 1995
Hpy8I GTNNAC 5 cut(s) 655, 747, 856, 1966, 1995
Hpy99I CGWCG 8 cut(s) 11, 17, 59, 65, 68, 92, 400, 2043
HpyAV CCTTC 4 cut(s) 190, 790, 1672, 1809
HpyCH4III ACNGT 9 cut(s) 35, 567, 575, 659, 674, 723, 1799, 1963, 2039
HpyCH4IV ACGT 1 cut(s) 1879
HpyF10VI GCNNNNNNNGC 8 cut(s) 50, 478, 481, 484, 490, 713, 881, 1325
HpyF3I CTNAG 4 cut(s) 468, 1155, 1287, 2112
HpySE526I ACGT 1 cut(s) 1879
Hsp92II CATG 9 cut(s) 883, 905, 930, 1451, 1486, 1577, 1652, 1771, 1796
HspAI GCGC 1 cut(s) 237
Kpn2I TCCGGA 1 cut(s) 254
Ksp22I TGATCA 1 cut(s) 1933
LmnI GCTCC 8 cut(s) 17, 226, 244, 788, 1333, 1367, 1375, 1447
Lsp1109I GCAGC 9 cut(s) 484, 487, 490, 493, 496, 859, 862, 1033, 1416
MabI ACCWGGT 1 cut(s) 628
MaeI CTAG 4 cut(s) 299, 1599, 2052, 2073
MaeII ACGT 1 cut(s) 1879
MaeIII GTNAC 4 cut(s) 35, 567, 1000, 1898
MbiI CCGCTC 1 cut(s) 1849
MboII GAAGA 8 cut(s) 205, 1350, 1392, 1710, 1751, 1925, 2039, 2104
MflI RGATCY 4 cut(s) 1537, 1715, 2048, 2069
MhlI GDGCHC 5 cut(s) 423, 469, 1330, 1372, 1968
MluCI AATT 5 cut(s) 383, 404, 503, 1090, 1150
MlyI GAGTC 1 cut(s) 1604
MmeI TCCRAC 1 cut(s) 619
Mph1103I ATGCAT 1 cut(s) 903
MroI TCCGGA 1 cut(s) 254
MroXI GAANNNNTTC 1 cut(s) 809
MseI TTAA 4 cut(s) 171, 915, 960, 1839
MslI CAYNNNNRTG 8 cut(s) 426, 576, 1487, 1578, 1632, 1797, 1824, 1971
MspI CCGG 4 cut(s) 209, 255, 1412, 1535
MspR9I CCNGG 8 cut(s) 630, 681, 851, 1179, 1365, 1434, 1563, 1970
Mva1269I GAATGC 1 cut(s) 1675
MvaI CCWGG 8 cut(s) 630, 681, 851, 1179, 1365, 1434, 1563, 1970
MvnI CGCG 1 cut(s) 1893
MwoI GCNNNNNNNGC 8 cut(s) 50, 478, 481, 484, 490, 713, 881, 1325
NcoI CCATGG 2 cut(s) 879, 1482
NlaIII CATG 9 cut(s) 883, 905, 930, 1451, 1486, 1577, 1652, 1771, 1796
NmeAIII GCCGAG 4 cut(s) 29, 103, 1169, 1898
NmuCI GTSAC 1 cut(s) 1898
NruI TCGCGA 1 cut(s) 1893
NsiI ATGCAT 1 cut(s) 903
NspI RCATGY 1 cut(s) 1771
OliI CACNNNNGTG 2 cut(s) 426, 576
PaeR7I CTCGAG 1 cut(s) 1884
PagI TCATGA 2 cut(s) 1648, 1792
PaqCI CACCTGC 1 cut(s) 698
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 1 cut(s) 1675
PdmI GAANNNNTTC 1 cut(s) 809
PfeI GAWTC 5 cut(s) 161, 295, 690, 866, 1453
PflMI CCANNNNNTGG 2 cut(s) 1322, 1415
PfoI TCCNGGA 2 cut(s) 679, 1363
PinAI ACCGGT 1 cut(s) 1411
Ple19I CGATCG 1 cut(s) 1897
PleI GAGTC 1 cut(s) 1603
PpsI GAGTC 1 cut(s) 1603
PpuMI RGGWCCY 2 cut(s) 100, 2001
Psp124BI GAGCTC 1 cut(s) 1372
Psp1406I AACGTT 1 cut(s) 1879
Psp5II RGGWCCY 2 cut(s) 100, 2001
Psp6I CCWGG 8 cut(s) 628, 679, 849, 1177, 1363, 1432, 1561, 1968
PspEI GGTNACC 1 cut(s) 1000
PspFI CCCAGC 2 cut(s) 1049, 1589
PspGI CCWGG 8 cut(s) 628, 679, 849, 1177, 1363, 1432, 1561, 1968
PspPPI RGGWCCY 2 cut(s) 100, 2001
PsuI RGATCY 4 cut(s) 1537, 1715, 2048, 2069
PvuI CGATCG 1 cut(s) 1897
RruI TCGCGA 1 cut(s) 1893
RsaI GTAC 1 cut(s) 1907
RsaNI GTAC 1 cut(s) 1906
RseI CAYNNNNRTG 8 cut(s) 426, 576, 1487, 1578, 1632, 1797, 1824, 1971
SacI GAGCTC 1 cut(s) 1372
SaqAI TTAA 4 cut(s) 171, 915, 960, 1839
SchI GAGTC 1 cut(s) 1604
ScrFI CCNGG 8 cut(s) 630, 681, 851, 1179, 1365, 1434, 1563, 1970
SduI GDGCHC 5 cut(s) 423, 469, 1330, 1372, 1968
SexAI ACCWGGT 1 cut(s) 628
SfcI CTRYAG 1 cut(s) 952
SfiI GGCCNNNNNGGCC 1 cut(s) 50
Sfr274I CTCGAG 1 cut(s) 1884
SinI GGWCC 6 cut(s) 100, 677, 1175, 1184, 2001, 2056
SlaI CTCGAG 1 cut(s) 1884
SmiMI CAYNNNNRTG 8 cut(s) 426, 576, 1487, 1578, 1632, 1797, 1824, 1971
SmlI CTYRAG 3 cut(s) 616, 978, 1884
SmoI CTYRAG 3 cut(s) 616, 978, 1884
Sse9I AATT 5 cut(s) 383, 404, 503, 1090, 1150
SsiI CCGC 9 cut(s) 224, 261, 512, 770, 922, 1849, 2059, 2098, 2101
SspMI CTAG 4 cut(s) 299, 1599, 2052, 2073
SstI GAGCTC 1 cut(s) 1372
StyD4I CCNGG 8 cut(s) 628, 679, 849, 1177, 1363, 1432, 1561, 1968
StyI CCWWGG 3 cut(s) 879, 1025, 1482
TaaI ACNGT 9 cut(s) 35, 567, 575, 659, 674, 723, 1799, 1963, 2039
TaiI ACGT 1 cut(s) 1882
TaqI TCGA 5 cut(s) 398, 813, 1833, 1843, 1885
TasI AATT 5 cut(s) 383, 404, 503, 1090, 1150
TauI GCSGC 3 cut(s) 925, 2101, 2104
TfiI GAWTC 5 cut(s) 161, 295, 690, 866, 1453
Tru1I TTAA 4 cut(s) 171, 915, 960, 1839
Tru9I TTAA 4 cut(s) 171, 915, 960, 1839
TscAI CASTG 6 cut(s) 367, 679, 700, 726, 746, 832
TseFI GTSAC 1 cut(s) 1898
TseI GCWGC 9 cut(s) 472, 475, 478, 481, 484, 872, 875, 1046, 1429
Tsp45I GTSAC 1 cut(s) 1898
TspDTI ATGAA 3 cut(s) 1392, 1691, 1989
TspGWI ACGGA 2 cut(s) 30, 767
TspRI CASTG 6 cut(s) 367, 679, 700, 726, 746, 832
Van91I CCANNNNNTGG 2 cut(s) 1322, 1415
VneI GTGCAC 1 cut(s) 1964
VpaK11BI GGWCC 6 cut(s) 100, 677, 1175, 1184, 2001, 2056
XceI RCATGY 1 cut(s) 1771
XhoI CTCGAG 1 cut(s) 1884
XmiI GTMKAC 2 cut(s) 855, 1994
XmnI GAANNNNTTC 1 cut(s) 809
XspI CTAG 4 cut(s) 299, 1599, 2052, 2073
Zsp2I ATGCAT 1 cut(s) 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.